peak-motifs -2000

Motif discovery

Motif 1 oligos_6nt_mkv2_m1

k-mer sig=2.26; evalue=0.0055

yrCATGCAyr

YRTGCATGYR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yrCATGCAyr

GLYMA-08G357600 MA1810.2 R 9 0.9000 0.927 0.834 NA NA

FUS3 MA0565.3 D 7 0.7000 0.935 0.655 NA NA

LEC2 MA0581.2 D 6 0.6000 0.971 0.582 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 6
(PAL1)
Mean nb of predicted sites per peak: 2.73

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv2_m2

k-mer sig=1.53; evalue=0.03

wcACCaACCvc

GBGGTTGGTGW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wcACCaACCvc

MYB63 MA2024.2 D 11 1.0000 0.846 0.846 NA NA

MYB13 MA2041.2 D 10 0.9091 0.927 0.843 NA NA

MYB10 MA1762.2 D 10 0.9091 0.871 0.792 NA NA

Total matches= 47 (44 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 7
(4CL1)
Mean nb of predicted sites per peak: 2.73

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv2_m3

k-mer sig=0.77; evalue=0.17

saCCtaCCkc

GMGGTAGGTS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor saCCtaCCkc

MYB63 MA2024.2 D 10 0.9091 0.889 0.808 NA NA

MYB3 MA1038.2 R 8 0.8000 0.948 0.758 NA NA

PK06182.1 MA2354.1 D 8 0.8000 0.940 0.752 NA NA

Total matches= 44 (41 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8 (47.06%)
Max nb of predicted sites per peak: 5
(CYP73A5)
Mean nb of predicted sites per peak: 1.75

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv2_m4

k-mer sig=0.70; evalue=0.2

mmCCCCaCym

KRGTGGGGKK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mmCCCCaCym

ARALYDRAFT_495258 MA1095.1 D 8 0.8000 0.789 0.631 NA NA

ARALYDRAFT_484486 MA1098.1 D 8 0.8000 0.789 0.631 NA NA

TCP19 MA1063.2 D 8 0.8000 0.740 0.592 NA NA

Total matches= 16 (13 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 4
(CYP98A3)
Mean nb of predicted sites per peak: 1.90

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv2_m5

k-mer sig=0.60; evalue=0.25

ssAAAACAar

YTTGTTTTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssAAAACAar

REF6 MA1415.2 D 8 0.7273 0.792 0.576 NA NA

SGR5 MA1159.2 D 10 0.7692 0.706 0.543 NA NA

GTL1 MA1661.2 D 6 0.5000 0.888 0.444 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4 (23.53%)
Max nb of predicted sites per peak: 2
(HST)
Mean nb of predicted sites per peak: 1.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_mkv2_m6

k-mer sig=0.20; evalue=0.63

myCCACCrms

SKYGGTGGRK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor myCCACCrms

DREB2F MA1242.1 D 10 0.9091 0.733 0.666 NA NA

LBD13 MA2021.2 D 8 0.8000 0.802 0.642 NA NA

MYB58 MA2042.2 D 8 0.7273 0.849 0.618 NA NA

Total matches= 38 (35 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 5
(PAL1)
Mean nb of predicted sites per peak: 2.36

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6nt_mkv2_m7

k-mer sig=0.13; evalue=0.74

mraCGGCGks

SMCGCCGTYK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mraCGGCGks

ERF4 MA0992.3 R 9 0.9000 0.816 0.735 NA NA

ERF8 MA0994.3 D 10 0.9091 0.795 0.722 NA NA

MYB3R3 MA2343.1 R 8 0.8000 0.883 0.706 NA NA

Total matches= 36 (33 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8 (47.06%)
Max nb of predicted sites per peak: 8
(CYP73A5)
Mean nb of predicted sites per peak: 2.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6nt_mkv2_m8

k-mer sig=0.02; evalue=0.95

rratGGGCbw

WVGCCCATYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rratGGGCbw

ASR1 MA1812.2 R 9 0.9000 0.829 0.746 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 5
(AT5G20950)
Mean nb of predicted sites per peak: 2.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_mkv2_m1

k-mer sig=3.93; evalue=0.00012

ytCACCaaCCCms

SKGGGTTGGTGAR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ytCACCaaCCCms

MYB43 MA1772.2 D 12 0.9231 0.811 0.749 NA NA

RAX3 MA0576.2 R 12 0.9231 0.786 0.726 NA NA

MYB51 MA1773.2 D 11 0.8462 0.848 0.718 NA NA

Total matches= 40 (37 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 6
(HST)
Mean nb of predicted sites per peak: 2.82

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv2_m2

k-mer sig=1.56; evalue=0.028

wvaCGSCGTywr

YWRACGSCGTBW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wvaCGSCGTywr

MYB3R3 MA2343.1 D 8 0.6667 0.876 0.584 NA NA

ERF4 MA0992.3 D 9 0.7500 0.727 0.545 NA NA

JUB1 MA2017.2 R 7 0.5833 0.867 0.506 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 7 (41.18%)
Max nb of predicted sites per peak: 8
(CYP73A5)
Mean nb of predicted sites per peak: 2.86

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv2_m3

k-mer sig=1.34; evalue=0.046

wcACCtACCcc

GGGGTAGGTGW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wcACCtACCcc

MYB63 MA2024.2 D 11 1.0000 0.926 0.926 NA NA

MYB10 MA1762.2 D 10 0.9091 0.928 0.843 NA NA

MYB43 MA1772.2 D 11 0.9167 0.892 0.818 NA NA

Total matches= 47 (44 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 5
(HST)
Mean nb of predicted sites per peak: 2.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv2_m4

k-mer sig=0.99; evalue=0.1

waCaCatGCatGtGtw

WACACATGCATGTGTW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor waCaCatGCatGtGtw

BEH4 MA1331.2 R 10 0.6250 0.710 0.444 NA NA

FUS3 MA0565.3 R 7 0.4375 0.982 0.429 NA NA

GLYMA-08G357600 MA1810.2 D 9 0.5625 0.755 0.425 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 4
(CYP82C4)
Mean nb of predicted sites per peak: 2.40

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv2_m5

k-mer sig=0.50; evalue=0.32

graGCCCAtba

TVATGGGCTYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor graGCCCAtba

ASR1 MA1812.2 D 9 0.8182 0.740 0.605 NA NA

PK21687.1 MA2357.1 D 7 0.6364 0.737 0.469 NA NA

TRP5 MA1802.2 D 7 0.6364 0.718 0.457 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (52.94%)
Max nb of predicted sites per peak: 4
(AT5G20950)
Mean nb of predicted sites per peak: 1.89

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv2_m6

k-mer sig=0.22; evalue=0.6

kcaCCaaaCsc

GSGTTTGGTGM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kcaCCaaaCsc

MYB49 MA2028.2 D 11 1.0000 0.752 0.752 NA NA

MYB43 MA1772.2 D 11 0.9167 0.800 0.733 NA NA

MYB10 MA1762.2 D 10 0.9091 0.802 0.729 NA NA

Total matches= 34 (31 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 8
(PAL2)
Mean nb of predicted sites per peak: 2.91

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv2_m7

k-mer sig=0.20; evalue=0.63

rrAGAGtGGrk

MYCCACTCTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrAGAGtGGrk

AZF1 MA2372.1 R 9 0.8182 0.701 0.574 NA NA

CDF3 MA0974.3 D 8 0.7273 0.774 0.563 NA NA

AT3G46070 MA1381.2 R 7 0.6364 0.728 0.463 NA NA

Total matches= 10 (7 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 13 (76.47%)
Max nb of predicted sites per peak: 4
(CYP98A3)
Mean nb of predicted sites per peak: 1.77

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 oligos_7nt_mkv2_m8

k-mer sig=0.99; evalue=0.1

rryGCatGCatGtGyk

MRCACATGCATGCRYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rryGCatGCatGtGyk

GLYMA-08G357600 MA1810.2 R 9 0.5625 0.944 0.531 NA NA

BEH4 MA1331.2 D 10 0.6250 0.729 0.456 NA NA

BEH3 MA1333.2 D 10 0.6250 0.709 0.443 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 14 (82.35%)
Max nb of predicted sites per peak: 5
(CYP82C4)
Mean nb of predicted sites per peak: 2.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 oligos_7nt_mkv2_m9

k-mer sig=0.02; evalue=0.95

amGAaaaCawr

YWTGTTTTCKT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor amGAaaaCawr

REF6 MA1415.2 D 8 0.6667 0.773 0.515 NA NA

Zm00001d027846 MA1823.2 D 7 0.5833 0.883 0.515 NA NA

NAC053 MA2049.2 D 6 0.5000 0.870 0.435 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 5
(ABCG37)
Mean nb of predicted sites per peak: 1.90

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 oligos_8nt_mkv2_m1

k-mer sig=7.56; evalue=2.8e-08

mytCACCaaCCCCvc

GBGGGGTTGGTGARK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mytCACCaaCCCCvc

MYB43 MA1772.2 D 12 0.8000 0.820 0.656 NA NA

MYB51 MA1773.2 D 11 0.7333 0.861 0.632 NA NA

RAX3 MA0576.2 R 12 0.8000 0.789 0.631 NA NA

Total matches= 28 (25 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 7
(4CL1)
Mean nb of predicted sites per peak: 3.09

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 oligos_8nt_mkv2_m2

k-mer sig=2.73; evalue=0.0019

ywaaCGGCGtbd

HVACGCCGTTWR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ywaaCGGCGtbd

MYB3R3 MA2343.1 R 8 0.6667 0.908 0.605 NA NA

ERF4 MA0992.3 R 9 0.7500 0.723 0.542 NA NA

JUB1 MA2017.2 D 7 0.5833 0.910 0.531 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8 (47.06%)
Max nb of predicted sites per peak: 8
(CYP73A5)
Mean nb of predicted sites per peak: 2.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 oligos_8nt_mkv2_m3

k-mer sig=2.30; evalue=0.005

rdCACATGCAtg

CATGCATGTGHY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rdCACATGCAtg

FUS3 MA0565.3 D 7 0.5833 0.995 0.580 NA NA

GLYMA-08G357600 MA1810.2 R 9 0.7500 0.705 0.529 NA NA

PIF5 MA0562.1 D 8 0.6667 0.782 0.521 NA NA

Total matches= 32 (29 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 14 (82.35%)
Max nb of predicted sites per peak: 3
(PAL2)
Mean nb of predicted sites per peak: 1.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 21 oligos_8nt_mkv2_m4

k-mer sig=1.01; evalue=0.098

swTGCATGCAws

SWTGCATGCAWS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor swTGCATGCAws

GLYMA-08G357600 MA1810.2 D 9 0.7500 0.987 0.740 NA NA

ABI3 MA0564.2 D 6 0.5000 0.995 0.498 NA NA

LEC2 MA0581.2 D 6 0.5000 0.967 0.484 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8 (47.06%)
Max nb of predicted sites per peak: 7
(CYP82C4)
Mean nb of predicted sites per peak: 3.62

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 22 oligos_8nt_mkv2_m5

k-mer sig=0.99; evalue=0.1

ytCaCCtACCvc

GBGGTAGGTGAR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ytCaCCtACCvc

MYB63 MA2024.2 D 11 0.9167 0.974 0.893 NA NA

MYB43 MA1772.2 D 12 1.0000 0.883 0.883 NA NA

MYB17 MA1766.2 D 11 0.9167 0.958 0.878 NA NA

Total matches= 53 (50 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 6
(CYP73A5)
Mean nb of predicted sites per peak: 2.82

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 23 oligos_8nt_mkv2_m6

k-mer sig=0.84; evalue=0.14

amGAAAaCAAarc

GYTTTGTTTTCKT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor amGAAAaCAAarc

SGR5 MA1159.2 D 12 0.8571 0.761 0.652 NA NA

Zm00001d027846 MA1823.2 D 8 0.6154 0.793 0.488 NA NA

DOF3.4 MA1278.2 R 11 0.5789 0.705 0.408 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 12 (70.59%)
Max nb of predicted sites per peak: 5
(HST)
Mean nb of predicted sites per peak: 2.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 24 oligos_8nt_mkv2_m7

k-mer sig=0.69; evalue=0.2

gyGGtGGaGayk

MRTCTCCACCRC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gyGGtGGaGayk

DREB2D MA1250.2 R 12 0.8571 0.758 0.650 NA NA

ERF057 MA1753.2 R 12 0.8571 0.727 0.623 NA NA

ERF014 MA1222.1 R 12 0.8000 0.766 0.613 NA NA

Total matches= 18 (15 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (52.94%)
Max nb of predicted sites per peak: 5
(CYP98A3)
Mean nb of predicted sites per peak: 2.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 25 dyads_m1

k-mer sig=7.45; evalue=3.5e-08

cyyCACCaACCCCmc

GKGGGGTTGGTGRRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyyCACCaACCCCmc

RAX3 MA0576.2 R 12 0.8000 0.827 0.662 NA NA

MYB63 MA2024.2 D 11 0.7333 0.886 0.650 NA NA

MYB51 MA1773.2 D 11 0.7333 0.881 0.646 NA NA

Total matches= 29 (26 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 12 (70.59%)
Max nb of predicted sites per peak: 8
(4CL1)
Mean nb of predicted sites per peak: 3.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 26 dyads_m2

k-mer sig=2.46; evalue=0.0035

swTGCATGCAws

SWTGCATGCAWS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor swTGCATGCAws

GLYMA-08G357600 MA1810.2 D 9 0.7500 0.987 0.740 NA NA

ABI3 MA0564.2 D 6 0.5000 0.995 0.498 NA NA

LEC2 MA0581.2 D 6 0.5000 0.967 0.484 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8 (47.06%)
Max nb of predicted sites per peak: 7
(CYP82C4)
Mean nb of predicted sites per peak: 3.62

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 27 dyads_m3

k-mer sig=2.25; evalue=0.0056

ccCCACCAaarc

GYTTTGGTGGGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccCCACCAaarc

MYB51 MA1773.2 D 11 0.9167 0.707 0.648 NA NA

MYB13 MA2041.2 D 10 0.8333 0.736 0.613 NA NA

MYB10 MA1762.2 D 10 0.8333 0.724 0.604 NA NA

Total matches= 19 (16 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 4
(F6'H1)
Mean nb of predicted sites per peak: 1.90

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 28 dyads_m4

k-mer sig=1.20; evalue=0.063

mmCCCCaCym

KRGTGGGGKK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mmCCCCaCym

ARALYDRAFT_495258 MA1095.1 D 8 0.8000 0.789 0.631 NA NA

ARALYDRAFT_484486 MA1098.1 D 8 0.8000 0.789 0.631 NA NA

TCP19 MA1063.2 D 8 0.8000 0.740 0.592 NA NA

Total matches= 16 (13 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 4
(CYP98A3)
Mean nb of predicted sites per peak: 1.90

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 29 dyads_m5

k-mer sig=1.09; evalue=0.081

ssAAAACAar

YTTGTTTTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssAAAACAar

REF6 MA1415.2 D 8 0.7273 0.792 0.576 NA NA

SGR5 MA1159.2 D 10 0.7692 0.706 0.543 NA NA

GTL1 MA1661.2 D 6 0.5000 0.888 0.444 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4 (23.53%)
Max nb of predicted sites per peak: 2
(HST)
Mean nb of predicted sites per peak: 1.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 30 dyads_m6

k-mer sig=0.78; evalue=0.17

bcCCCwCTCtc

GAGAGWGGGGV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor bcCCCwCTCtc

RAMOSA1 MA1416.1 R 11 0.7857 0.735 0.577 NA NA

AT3G46070 MA1381.2 D 7 0.6364 0.736 0.468 NA NA

ARALYDRAFT_495258 MA1095.1 D 7 0.5833 0.785 0.458 NA NA

Total matches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (52.94%)
Max nb of predicted sites per peak: 4
(CYP98A3)
Mean nb of predicted sites per peak: 2.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 31 dyads_m7

k-mer sig=0.56; evalue=0.28

mcCCACCACcm

KGGTGGTGGGK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mcCCACCACcm

MYB60 MA1774.2 D 10 0.9091 0.723 0.657 NA NA

MYB58 MA2042.2 D 9 0.8182 0.753 0.616 NA NA

MYB30 MA1768.2 D 10 0.7692 0.770 0.592 NA NA

Total matches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8 (47.06%)
Max nb of predicted sites per peak: 4
(PAL1)
Mean nb of predicted sites per peak: 2.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 32 dyads_m8

k-mer sig=0.56; evalue=0.28

rratGGGCbw

WVGCCCATYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rratGGGCbw

ASR1 MA1812.2 R 9 0.9000 0.829 0.746 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 10 (58.82%)
Max nb of predicted sites per peak: 5
(AT5G20950)
Mean nb of predicted sites per peak: 2.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 33 dyads_m9

k-mer sig=2.25; evalue=0.0056

cyrACCAAAmc

GKTTTGGTYRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyrACCAAAmc

MYB51 MA1773.2 D 11 1.0000 0.722 0.722 NA NA

MYB40 MA1770.2 D 10 0.9091 0.752 0.683 NA NA

MYB43 MA1772.2 D 11 0.9167 0.727 0.667 NA NA

Total matches= 34 (31 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 11 (64.71%)
Max nb of predicted sites per peak: 8
(PAL2)
Mean nb of predicted sites per peak: 2.55

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 34 dyads_m10

k-mer sig=0.22; evalue=0.6

mraCGGCGks

SMCGCCGTYK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mraCGGCGks

ERF4 MA0992.3 R 9 0.9000 0.816 0.735 NA NA

ERF8 MA0994.3 D 10 0.9091 0.795 0.722 NA NA

MYB3R3 MA2343.1 R 8 0.8000 0.883 0.706 NA NA

Total matches= 36 (33 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8 (47.06%)
Max nb of predicted sites per peak: 8
(CYP73A5)
Mean nb of predicted sites per peak: 2.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_plants_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: -2000 (26/02/2026 15:33)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rratGGGCbw

ASR1 MA1812.2 R 9 0.9000 0.829 0.746 NA NA

Total matches= 1

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rratGGGCbw

ASR1 MA1812.2 R 9 0.9000 0.829 0.746 NA NA

Total matches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: -2000 (26/02/2026 15:33)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor rratGGGCbw ASR1 MA1812.2 R 9 0.9000 0.829 0.746 NA NA Total matches= 1

JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor rratGGGCbw ASR1 MA1812.2 R 9 0.9000 0.829 0.746 NA NA Total matches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rratGGGCbw

ASR1 MA1812.2 R 9 0.9000 0.829 0.746 NA NA

Total matches= 1

JASPAR2024_CORE_plants_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rratGGGCbw

ASR1 MA1812.2 R 9 0.9000 0.829 0.746 NA NA

Total matches= 1