position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title up4 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 17 Sum of sequence lengths 3417 Min sequence length 0 Max sequence length 201 Average sequence length 201 Possible positions 3417 Sequences: # length ID 1 201 PAL1 2 201 PAL2 3 201 CYP73A5 4 201 4CL1 5 201 4CL2 6 201 HST 7 201 CYP98A3 8 201 CCoAOMT1 9 201 F6'H1 10 201 AT1G65450 11 201 AT3G12900 12 201 CYP82C4 13 201 UGT73B1 14 201 AT5G20950 15 201 ABCG37 16 201 ATMYB72 17 201 SYP122 Oligonucleotide statistics: Total occurrences 3104 Position interval parameters: Position interval 20 Number of windows 11 Total positions 3417 Degrees of freedom 10 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -6 [-119,-100] -109.5 17 17 2 -5 [-99,-80] -89.5 17 340 3 -4 [-79,-60] -69.5 17 340 4 -3 [-59,-40] -49.5 17 340 5 -2 [-39,-20] -29.5 17 340 6 -1 [-19,0] -9.5 17 340 7 0 [1,20] 10.5 17 340 8 1 [21,40] 30.5 17 340 9 2 [41,60] 50.5 17 340 10 3 [61,80] 70.5 17 340 11 4 [81,100] 90.5 17 340 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -109.5 occurrences in window 1 [-119,-100] 11 -89.5 occurrences in window 2 [-99,-80] 12 -69.5 occurrences in window 3 [-79,-60] 13 -49.5 occurrences in window 4 [-59,-40] 14 -29.5 occurrences in window 5 [-39,-20] 15 -9.5 occurrences in window 6 [-19,0] 16 10.5 occurrences in window 7 [1,20] 17 30.5 occurrences in window 8 [21,40] 18 50.5 occurrences in window 9 [41,60] 19 70.5 occurrences in window 10 [61,80] 20 90.5 occurrences in window 11 [81,100]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 753 | 18.9 | 10 | 4.2e-02 | 0.17 | 0.78 | 1 | 6 | 75 | 62 | 69 | 73 | 77 | 56 | 79 | 67 | 94 | 95 |
| a | a | 1008 | 15.7 | 10 | 1.1e-01 | 0.43 | 0.37 | 2 | 4 | 107 | 100 | 91 | 73 | 111 | 122 | 101 | 105 | 92 | 102 |
| g | g | 452 | 15.3 | 10 | 1.2e-01 | 0.49 | 0.31 | 3 | 3 | 44 | 45 | 33 | 37 | 37 | 43 | 43 | 62 | 54 | 51 |
| t | t | 891 | 7.4 | 10 | 6.9e-01 | 2.7 | -0.44 | 4 | 2 | 77 | 86 | 84 | 85 | 87 | 92 | 81 | 105 | 100 | 92 |
Host name rsat Job started 2026-02-26.153915 Job done 2026-02-26.153915 Seconds 0.11 user 0.11 system 0.01 cuser 0.01 ; csystem 0