/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title up4 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	17
	Sum of sequence lengths      	3417
	Min sequence length          	0
	Max sequence length          	201
	Average sequence length      	201
	Possible positions           	3400
 Sequences:
	#	length	ID
	1	201	PAL1
	2	201	PAL2
	3	201	CYP73A5
	4	201	4CL1
	5	201	4CL2
	6	201	HST
	7	201	CYP98A3
	8	201	CCoAOMT1
	9	201	F6'H1
	10	201	AT1G65450
	11	201	AT3G12900
	12	201	CYP82C4
	13	201	UGT73B1
	14	201	AT5G20950
	15	201	ABCG37
	16	201	ATMYB72
	17	201	SYP122
 Oligonucleotide statistics:
	Total occurrences    	3080
 Position interval parameters:
	Position interval    	20
	Number of windows    	11
	Total positions      	3400
	Degrees of freedom   	10
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-6	[-119,-100]	-109.5	17	17
	2	-5	[-99,-80]	-89.5	17	340
	3	-4	[-79,-60]	-69.5	17	340
	4	-3	[-59,-40]	-49.5	17	340
	5	-2	[-39,-20]	-29.5	17	340
	6	-1	[-19,0]	-9.5	17	340
	7	0	[1,20]	10.5	17	340
	8	1	[21,40]	30.5	17	340
	9	2	[41,60]	50.5	17	340
	10	3	[61,80]	70.5	17	340
	11	4	[81,100]	90.5	17	323

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-109.5         	occurrences in window	1	[-119,-100]
	11	-89.5          	occurrences in window	2	[-99,-80]
	12	-69.5          	occurrences in window	3	[-79,-60]
	13	-49.5          	occurrences in window	4	[-59,-40]
	14	-29.5          	occurrences in window	5	[-39,-20]
	15	-9.5           	occurrences in window	6	[-19,0]
	16	10.5           	occurrences in window	7	[1,20]
	17	30.5           	occurrences in window	8	[21,40]
	18	50.5           	occurrences in window	9	[41,60]
	19	70.5           	occurrences in window	10	[61,80]
	20	90.5           	occurrences in window	11	[81,100]
seq id occ chi2 df Pval Eval sig rank -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5
cc cc 167 34.9 10 1.3e-04 0.0021 2.69 1 2 16 7 15 20 14 7 23 8 28 27
aa aa 384 23.2 10 1.0e-02 0.16 0.79 2 0 44 39 30 20 46 56 43 41 32 33
cg cg 99 13.5 10 2.0e-01 3.2 -0.50 3 1 10 9 7 4 11 5 11 13 17 11
gc gc 99 12.9 10 2.3e-01 3.6 -0.56 4 1 11 12 6 9 6 7 6 17 14 10
gg gg 73 12.6 10 2.5e-01 4 -0.60 5 2 11 4 6 5 2 8 5 11 9 10
ct ct 192 11.1 10 3.5e-01 5.6 -0.75 6 1 15 22 19 25 15 11 16 20 25 23
tg tg 133 10.3 10 4.1e-01 6.6 -0.82 7 1 6 15 9 12 15 16 15 20 13 11
ac ac 229 9.3 10 5.0e-01 8.1 -0.91 8 0 21 22 28 18 33 24 23 19 17 24
tc tc 249 8.1 10 6.2e-01 9.9 -0.99 9 1 22 22 22 24 24 18 26 26 34 30
gt gt 130 7.9 10 6.4e-01 10 -1.01 10 0 10 13 9 9 12 13 17 19 16 12
tt tt 320 7.1 10 7.2e-01 12 -1.06 11 0 26 29 33 32 37 38 25 40 32 28
ca ca 287 6.9 10 7.4e-01 12 -1.07 12 2 34 24 27 23 37 32 29 26 24 29
ag ag 143 5.7 10 8.4e-01 13 -1.13 13 1 17 14 12 16 8 12 15 18 14 16
ta ta 183 5.6 10 8.5e-01 14 -1.13 14 0 23 19 20 17 11 19 15 19 21 19
at at 246 4.9 10 9.0e-01 14 -1.16 15 3 25 25 21 19 24 30 20 27 29 23
ga ga 146 2.5 10 9.9e-01 16 -1.20 16 0 11 15 12 14 17 15 15 15 15 17 
 Host name	rsat
 Job started	2026-02-26.153916
 Job done	2026-02-26.153916
 Seconds	0.12
	user	0.12
	system	0.02
	cuser	0
;	csystem	0