; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	1	2	0	0	7	0	0	0	3	0
c	7	3	10	9	0	10	10	0	2	3
g	0	3	0	0	2	0	0	10	0	4
t	2	2	0	1	1	0	0	0	5	3
//
; Sites	10
>site_0
TACCACCGTG
>site_1
CACCACCGTG
>site_2
CCCCACCGTC
>site_3
CTCCTCCGAT
>site_4
ACCTACCGCC
>site_5
TGCCACCGAG
>site_6
CGCCACCGCT
>site_7
CGCCGCCGTC
>site_8
CCCCGCCGAG
>site_9
CTCCACCGTT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m1_rc.png
;
a	1	1	6	0	0	4	6	3	0	0	0	2	3
c	0	3	0	6	6	0	0	3	6	0	6	2	1
g	1	0	0	0	0	0	0	0	0	6	0	2	1
t	4	2	0	0	0	2	0	0	0	0	0	0	1
//
; Sites	6
>site_0
TCACCAACCGCGA
>site_1
TCACCAACCGCAA
>site_2
AAACCAAACGCGT
>site_3
GTACCTAACGCCG
>site_4
TTACCAAACGCAA
>site_5
TCACCTACCGCCC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m2_rc.png
;
a	4	5	0	0	11	4	3	7	6	6	1	4	3	3	2	5	3	7	3	8	7	12	0	12	4	4
c	4	5	0	12	0	3	3	3	2	1	2	3	4	2	2	2	6	1	3	1	1	0	12	0	2	2
g	2	0	0	0	1	2	2	0	2	0	2	0	1	2	3	2	0	2	1	0	1	0	0	0	1	1
t	2	2	12	0	0	3	4	2	2	5	7	5	4	5	5	3	3	2	5	3	3	0	0	0	5	5
//
; Sites	12
>site_0
CTTCACCAAACACTTTTACATACACT
>site_1
CCTCAGCAAAATCATGAAACAACAAC
>site_2
AATCATGAAACAACAACACTAACATT
>site_3
GCTCAAACGTTACTTTCCAAAACAAT
>site_4
GATCGAGATTGCCTGATATATACATC
>site_5
CATCATTAAATCTAGACATAAACACA
>site_6
ACTCACAAAATTTGGCAGCAAACAGT
>site_7
ATTCACTTGTTTTCAATTTTCACATA
>site_8
TCTCAATCTTTAAGCAAATAAACAAA
>site_9
AATCAATCACGTGTCGCTTTTACAAT
>site_10
CATCAGATCATCATTCCGGAGACATA
>site_11
TCTCATCACTTTTATTCAAAAACATG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.153913_2026-02-26.153913_tNYaGF/results/dyads//peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m3_rc.png
;
; Host name	rsat
; Job started	2026-02-26.153929
; Job done	2026-02-26.153930
; Seconds	0.13
;	user	0.13
;	system	0.02
;	cuser	0.68
;	csystem	0.13
