RSAT - peak-motifs result

Analysis: up4 (26/02/2026 15:44)

peak-motifs  -v 1 -title up4 -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.154110_2026-02-26.154110_3TteyG/peak-motifspeak_seq -min_markov 1 -max_markov 1 -disco oligos,dyads,positions -nmotifs 10 -minol 6 -maxol 8 -merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_plants_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_plants_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.154110_2026-02-26.154110_3TteyG

motif discovery
positions_6-8nt	Not a single significant pattern	[positions_6-8nt]
oligos_6-8nt	oligos_6-8nt_m1 assembly: aaaccaaac (sig=2.58; e-value=0.0026) RC: gtttggttt oligos_6-8nt_m2 assembly: ccaccgt (sig=2.54; e-value=0.0029) RC: acggtgg oligos_6-8nt_m3 assembly: aacggcgt (sig=1.66; e-value=0.022) RC: acgccgtt oligos_6-8nt_m4 assembly: aagagatcttc (sig=1.28; e-value=0.052) RC: gaagatctctt oligos_6-8nt_m5 assembly: gccacgac (sig=1.10; e-value=0.079) RC: gtcgtggc oligos_6-8nt_m6 assembly: ggttggtga (sig=1.08; e-value=0.083) RC: tcaccaacc oligos_6-8nt_m7 assembly: cagccac (sig=0.89; e-value=0.13) RC: gtggctg oligos_6-8nt_m8 assembly: acggtggaga (sig=2.54; e-value=0.0029) RC: tctccaccgt oligos_6-8nt_m9 assembly: gtagtaa (sig=0.44; e-value=0.36) RC: ttactac oligos_6-8nt_m10 assembly: accttctc (sig=0.27; e-value=0.54) RC: gagaaggt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
dyads	dyads_m1 assembly: ccaccg (sig=0.70; e-value=0.2) RC: cggtgg dyads_m2 assembly: accnnncgc (sig=0.57; e-value=0.27) RC: gcgnnnggt dyads_m3 assembly: tcannnnnnnnnnnnnnnnaca (sig=0.19; e-value=0.65) RC: tgtnnnnnnnnnnnnnnnntga dyads_m4 : (sig=; e-value=1) RC: dyads_m5 : (sig=; e-value=1) RC: dyads_m6 : (sig=; e-value=1) RC: dyads_m7 : (sig=; e-value=1) RC: dyads_m8 : (sig=; e-value=1) RC: dyads_m9 : (sig=; e-value=1) RC: dyads_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6-8nt_m1	k-mer sig=2.58; evalue=0.0026 ysAAACCAAAcym KRGTTTGGTTTSR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ysAAACCAAAcym MYB93 MA2025.2 D 8 0.6154 0.878 0.541 NA NA MYB107 MA2007.2 D 8 0.6154 0.837 0.515 NA NA MYB101 MA1173.2 D 9 0.6923 0.720 0.499 NA NA Total matches= 14 (11 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (29.41%) Max nb of predicted sites per peak: 5  (PAL2) Mean nb of predicted sites per peak: 1.80	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6-8nt_m2	k-mer sig=2.54; evalue=0.0029 YrCCACCGtbd HVACGGTGGYR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor YrCCACCGtbd ERF8 MA0994.3 R 11 1.0000 0.786 0.786 NA NA LBD13 MA2021.2 D 8 0.7273 0.963 0.701 NA NA DREB2F MA1242.1 D 10 0.8333 0.837 0.698 NA NA Total matches= 66 (63 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 7 (41.18%) Max nb of predicted sites per peak: 2  (PAL1) Mean nb of predicted sites per peak: 1.29	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6-8nt_m3	k-mer sig=1.66; evalue=0.022 kwAACGSCGTKw WMACGSCGTTWM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor kwAACGSCGTKw MYB3R3 MA2343.1 R 8 0.6667 0.905 0.604 NA NA JUB1 MA2017.2 D 7 0.5833 0.854 0.498 NA NA MYB1 MA1179.2 R 7 0.5833 0.784 0.457 NA NA Total matches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (23.53%) Max nb of predicted sites per peak: 4  (CYP73A5) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6-8nt_m4	k-mer sig=1.28; evalue=0.052 KRraGAGATCtkcrG CYGMAGATCTCTYYM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor KRraGAGATCtkcrG GATA6 MA1396.2 D 10 0.6667 0.832 0.555 NA NA GATA1 MA2388.1 D 10 0.6667 0.817 0.545 NA NA GATA11 MA1014.1 D 8 0.5333 0.834 0.445 NA NA Total matches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6 (35.29%) Max nb of predicted sites per peak: 2  (ATMYB72) Mean nb of predicted sites per peak: 1.17	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6-8nt_m5	k-mer sig=1.10; evalue=0.079 mrrCCACGAmww WWKTCGTGGYYK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mrrCCACGAmww EmBP-1 MA0128.1 R 8 0.6667 0.719 0.479 NA NA NAC019 MA1786.2 D 7 0.5833 0.785 0.458 NA NA ARF4 MA1697.2 D 7 0.5385 0.827 0.445 NA NA Total matches= 8 (5 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (23.53%) Max nb of predicted sites per peak: 2  (PAL1) Mean nb of predicted sites per peak: 1.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_6-8nt_m6	k-mer sig=1.08; evalue=0.083 GkGGttGGTGadK MHTCACCAACCMC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor GkGGttGGTGadK MYB63 MA2024.2 R 11 0.8462 0.877 0.742 NA NA MYB51 MA1773.2 R 11 0.8462 0.849 0.718 NA NA MYB43 MA1772.2 R 12 0.9231 0.778 0.718 NA NA Total matches= 41 (38 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 7 (41.18%) Max nb of predicted sites per peak: 5  (CYP73A5) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_6-8nt_m7	k-mer sig=0.89; evalue=0.13 ryCaGCCACsr YSGTGGCTGRY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ryCaGCCACsr MYB96 MA2030.2 D 11 1.0000 0.704 0.704 NA NA MYB94 MA1781.2 D 10 0.9091 0.749 0.681 NA NA MYB60 MA1774.2 D 10 0.9091 0.743 0.675 NA NA Total matches= 7 (4 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (23.53%) Max nb of predicted sites per peak: 2  (PAL2) Mean nb of predicted sites per peak: 1.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_6-8nt_m8	k-mer sig=2.54; evalue=0.0029 mvrCGGTGGaGwyk MRWCTCCACCGYBK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mvrCGGTGGaGwyk ERF014 MA1222.1 R 14 0.9333 0.733 0.684 NA NA DREB2D MA1250.2 R 13 0.8667 0.777 0.673 NA NA ERF057 MA1753.2 R 13 0.8667 0.711 0.616 NA NA Total matches= 26 (23 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 8 (47.06%) Max nb of predicted sites per peak: 3  (CYP98A3) Mean nb of predicted sites per peak: 1.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_6-8nt_m9	k-mer sig=0.44; evalue=0.36 rgGTaGTAAhG CDTTACTACCY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rgGTaGTAAhG SPL6A MA2449.1 D 10 0.8333 0.713 0.594 NA NA SPL4D MA2445.1 R 10 0.7692 0.713 0.549 NA NA SPL15D MA2433.1 R 9 0.7500 0.718 0.538 NA NA Total matches= 8 (5 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 8 (47.06%) Max nb of predicted sites per peak: 2  (UGT73B1) Mean nb of predicted sites per peak: 1.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_6-8nt_m10	k-mer sig=0.27; evalue=0.54 yTACCTTCTCgr YCGAGAAGGTAR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yTACCTTCTCgr SRM1 MA1681.2 R 9 0.7500 0.740 0.555 NA NA Zm00001d024644 MA2106.1 D 8 0.6667 0.726 0.484 NA NA Zm00001d044785 MA1827.2 D 7 0.5833 0.825 0.481 NA NA Total matches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (23.53%) Max nb of predicted sites per peak: 2  (PAL2) Mean nb of predicted sites per peak: 1.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   dyads_m1	k-mer sig=0.70; evalue=0.2 CsCCrCCGtb VACGGYGGSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor CsCCrCCGtb LEP MA1246.2 D 10 1.0000 0.813 0.813 NA NA ERF087 MA1247.2 R 10 1.0000 0.807 0.807 NA NA Zm00001d052229 MA1818.1 D 10 1.0000 0.806 0.806 NA NA Total matches= 102 (99 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6 (35.29%) Max nb of predicted sites per peak: 2  (PAL1) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   dyads_m2	k-mer sig=0.57; evalue=0.27 kyACCwAmCGCvr YBGCGKTWGGTRM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor kyACCwAmCGCvr RAX3 MA0576.2 R 12 0.9231 0.709 0.654 NA NA MYB63 MA2024.2 D 11 0.8462 0.769 0.651 NA NA MYB10 MA1762.2 D 10 0.7692 0.812 0.625 NA NA Total matches= 34 (31 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (29.41%) Max nb of predicted sites per peak: 2  (PAL2) Mean nb of predicted sites per peak: 1.40	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   dyads_m3	k-mer sig=0.19; evalue=0.65 vmTCAvbmrwkhykkrcryaaACAww WWTGTTTRYGYMMRDMWYKVBTGAKB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_plants_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor vmTCAvbmrwkhykkrcryaaACAww Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 7 (41.18%) Max nb of predicted sites per peak: 2  (CCoAOMT1) Mean nb of predicted sites per peak: 1.29	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title up4 -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.154110_2026-02-26.154110_3TteyG/peak-motifspeak_seq -min_markov 1 -max_markov 1 -disco oligos,dyads,positions -nmotifs 10 -minol 6 -maxol 8 -merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_plants_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_plants_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.154110_2026-02-26.154110_3TteyG

Warning: Not a single pattern was found in file tmp/www-data/2026/02/26/peak-motifs.2026-02-26.154110_2026-02-26.154110_3TteyG/results/positions_6-8nt/peak-motifs_positions-2str-noov_6-8nt_ci50.tab