/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.161408_2026-02-26.161408_KNDlH3/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.161408_2026-02-26.161408_KNDlH3/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title 200 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.161408_2026-02-26.161408_KNDlH3/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.161408_2026-02-26.161408_KNDlH3/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.161408_2026-02-26.161408_KNDlH3/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	944
	Sum of sequence lengths      	193366
	Min sequence length          	0
	Max sequence length          	237
	Average sequence length      	204
	Possible positions           	192422
 Oligonucleotide statistics:
	Total occurrences    	147377
 Position interval parameters:
	Position interval    	20
	Number of windows    	12
	Total positions      	192422
	Degrees of freedom   	11
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-6	[-119,-100]	-109.5	944	2751
	2	-5	[-99,-80]	-89.5	944	18880
	3	-4	[-79,-60]	-69.5	944	18880
	4	-3	[-59,-40]	-49.5	944	18880
	5	-2	[-39,-20]	-29.5	944	18880
	6	-1	[-19,0]	-9.5	944	18880
	7	0	[1,20]	10.5	944	18880
	8	1	[21,40]	30.5	944	18880
	9	2	[41,60]	50.5	944	18880
	10	3	[61,80]	70.5	944	18880
	11	4	[81,100]	90.5	944	18240
	12	5	[101,120]	110.5	284	1511

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-109.5         	occurrences in window	1	[-119,-100]
	11	-89.5          	occurrences in window	2	[-99,-80]
	12	-69.5          	occurrences in window	3	[-79,-60]
	13	-49.5          	occurrences in window	4	[-59,-40]
	14	-29.5          	occurrences in window	5	[-39,-20]
	15	-9.5           	occurrences in window	6	[-19,0]
	16	10.5           	occurrences in window	7	[1,20]
	17	30.5           	occurrences in window	8	[21,40]
	18	50.5           	occurrences in window	9	[41,60]
	19	70.5           	occurrences in window	10	[61,80]
	20	90.5           	occurrences in window	11	[81,100]
	21	110.5          	occurrences in window	12	[101,120]
seq id occ chi2 df Pval Eval sig rank -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5
aa aa 18999 484.4 11 0.0e+00 0 300 1 287 1790 1694 1704 1721 1518 1525 1950 1945 2251 2423 191
tt tt 18531 438.3 11 0.0e+00 0 300 2 269 1712 1738 1737 1593 1527 1559 1705 1933 2250 2338 170
at at 12540 341.7 11 1.4e-66 2.2e-65 64.66 3 188 1228 1173 1130 1106 1038 1015 1149 1244 1491 1656 122
ta ta 11066 304.2 11 1.1e-58 1.8e-57 56.74 4 191 1080 1005 1057 977 904 877 997 1116 1304 1434 124
cg cg 4166 272.3 11 5.9e-52 9.5e-51 50.02 5 51 244 288 321 387 557 594 417 470 415 397 25
ca ca 9420 218.5 11 1.0e-40 1.7e-39 38.78 6 130 814 866 795 815 778 920 922 978 1127 1167 108
cc cc 5301 206.2 11 3.9e-38 6.2e-37 36.21 7 61 370 393 408 454 546 587 546 604 649 618 65
tc tc 8292 187.8 11 2.5e-34 4e-33 32.40 8 122 666 686 704 698 784 881 821 864 978 998 90
ac ac 8546 148.9 11 2.5e-26 4.1e-25 24.39 9 114 685 763 777 751 812 816 808 919 994 1017 90
ct ct 7546 136.7 11 7.7e-24 1.2e-22 21.91 10 108 634 648 715 632 711 733 704 789 884 909 79
tg tg 9179 109.2 11 2.7e-18 4.2e-17 16.37 11 162 928 893 861 860 825 790 806 872 1022 1071 89
gc gc 4316 93.6 11 3.2e-15 5.2e-14 13.29 12 55 322 357 335 421 476 515 425 447 459 470 34
gt gt 8429 85.6 11 1.2e-13 1.9e-12 11.72 13 173 822 771 766 782 771 800 765 831 930 927 91
ag ag 7607 67.0 11 4.6e-10 7.3e-09 8.14 14 140 736 703 682 696 715 689 754 743 808 857 84
gg gg 5241 55.3 11 6.9e-08 1.1e-06 5.96 15 74 455 441 482 609 560 552 465 483 534 542 44
ga ga 8198 47.1 11 2.0e-06 3.3e-05 4.49 16 116 764 767 722 769 833 773 807 790 870 916 71 
 Host name	rsat
 Job started	2026-02-26.161413
 Job done	2026-02-26.161414
 Seconds	1.15
	user	1.15
	system	0.02
	cuser	0
;	csystem	0