; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 10 -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/oligos_6nt_mkv3/peak-motifs_oligos-2str-noov_6nt_mkv3_pssm.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	19
;

; assembly # 1	seed: aaataa	3 assembled patterns	length 8
; alignt	 rev_cpl	score
gaaata..	..tatttc	0.64
.aaataa.	.ttattt.	5.03
..aataaa	tttatt..	2.16
gaaataaa	tttatttc	5.03	best consensus

; assembly # 2	seed: aagcaa	1 assembled patterns	length 6
;alignt	rev_cpl	score
aagcaa	ttgctt	3.47
aagcaa	ttgctt	3.47	best consensus

; assembly # 3	seed: aacaaa	2 assembled patterns	length 7
;alignt	rev_cpl	score
aaacaa.	.ttgttt	0.11
.aacaaa	tttgtt.	3.39
aaacaaa	tttgttt	3.39	best consensus

; assembly # 4	seed: ccaggc	3 assembled patterns	length 8
; alignt	 rev_cpl	score
acccag..	..ctgggt	0.68
.cccagg.	.cctggg.	0.05
..ccaggc	gcctgg..	2.43
acccaggc	gcctgggt	2.43	best consensus

; assembly # 5	seed: aatgta	2 assembled patterns	length 7
;alignt	rev_cpl	score
aatgta.	.tacatt	1.93
.atgtat	atacat.	0.69
aatgtat	atacatt	1.93	best consensus

; assembly # 6	seed: cctccc	1 assembled patterns	length 6
;alignt	rev_cpl	score
cctccc	gggagg	1.77
cctccc	gggagg	1.77	best consensus

; assembly # 7	seed: cactgc	1 assembled patterns	length 6
;alignt	rev_cpl	score
cactgc	gcagtg	1.45
cactgc	gcagtg	1.45	best consensus

; assembly # 8	seed: attcaa	1 assembled patterns	length 6
;alignt	rev_cpl	score
attcaa	ttgaat	1.29
attcaa	ttgaat	1.29	best consensus

; assembly # 9	seed: tacata	2 assembled patterns	length 7
;alignt	rev_cpl	score
atacat.	.atgtat	0.69
.tacata	tatgta.	0.89
atacata	tatgtat	0.89	best consensus

; assembly # 10	seed: aaagaa	1 assembled patterns	length 6
;alignt	rev_cpl	score
aaagaa	ttcttt	0.46
aaagaa	ttcttt	0.46	best consensus
; Maximal number of assemblies is reached (10). Remaining patterns: 2.
; Host name	rsat
; Job started	2026-02-26.200638
; Job done	2026-02-26.200639
; Seconds	0.74
;	user	0.74
;	system	0
;	cuser	0
;	csystem	0
