; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29599
;		c	0.20450
;		g	0.20176
;		t	0.29775
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
hg38_ct_MyTrack_6202_0	site	positions_6nt_m1	D	-297	-288	GAATGTAATT	7.7
hg38_ct_MyTrack_6202_0	site	positions_6nt_m1	R	193	202	TTATGTAAAT	8.4
hg38_ct_MyTrack_6202_0	site	positions_6nt_m1	D	232	241	AAATGTAATT	8.0
hg38_ct_MyTrack_6202_0	site	positions_6nt_m1	R	437	446	CTATGTAATT	8.0
hg38_ct_MyTrack_6202_1	site	positions_6nt_m1	D	-297	-288	GAATGTAATT	7.7
hg38_ct_MyTrack_6202_1	site	positions_6nt_m1	R	193	202	TTATGTAAAT	8.4
hg38_ct_MyTrack_6202_1	site	positions_6nt_m1	D	232	241	AAATGTAATT	8.0
hg38_ct_MyTrack_6202_1	site	positions_6nt_m1	R	437	446	CTATGTAATT	8.0
hg38_ct_MyTrack_6202_2	site	positions_6nt_m1	R	154	163	TAATGTAATG	7.6
hg38_ct_MyTrack_6202_2	site	positions_6nt_m1	D	353	362	AAATGTAAAA	7.7
hg38_ct_MyTrack_6202_3	site	positions_6nt_m1	D	-365	-356	AAATGTAATT	8.0
hg38_ct_MyTrack_6202_5	site	positions_6nt_m1	R	384	393	ATATGTAAAG	8.6
hg38_ct_MyTrack_6202_6	site	positions_6nt_m1	R	-456	-447	ATATGTAAAA	8.4
hg38_ct_MyTrack_6202_6	site	positions_6nt_m1	R	-62	-53	GTATGTAAAT	8.8
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	R	-488	-479	ATATGTAAAA	8.4
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	D	-113	-104	TTATGTAAAG	7.9
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	R	279	288	ACATGTAACT	8.3
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	D	283	292	ACATGTAAGG	7.5
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	D	300	309	AAATGTAATC	7.6
hg38_ct_MyTrack_6202_8	site	positions_6nt_m1	D	-165	-156	ATATGTAAAT	9.2
hg38_ct_MyTrack_6202_8	site	positions_6nt_m1	R	194	203	ACATGTAATA	8.4
hg38_ct_MyTrack_6202_10	site	positions_6nt_m1	R	-150	-141	ATATGTAACA	8.2
hg38_ct_MyTrack_6202_12	site	positions_6nt_m1	D	381	390	AAATGTAATG	7.7
hg38_ct_MyTrack_6202_3	site	positions_6nt_m1	R	137	146	TTATGTAAAT	8.4
hg38_ct_MyTrack_6202_4	site	positions_6nt_m1	D	-116	-107	TTATGTAACT	7.9
hg38_ct_MyTrack_6202_4	site	positions_6nt_m1	R	281	290	AAATGTAAAA	7.7
hg38_ct_MyTrack_6202_6	site	positions_6nt_m1	R	46	55	ATATGTAATC	8.3
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	R	412	421	TTATGTAAAA	7.7
hg38_ct_MyTrack_6202_8	site	positions_6nt_m1	D	-283	-274	ACATGTAAAT	8.8
hg38_ct_MyTrack_6202_9	site	positions_6nt_m1	D	-105	-96	TCATGTAATA	7.7
hg38_ct_MyTrack_6202_10	site	positions_6nt_m1	D	-76	-67	GAATGTAATT	7.7
hg38_ct_MyTrack_6202_12	site	positions_6nt_m1	D	263	272	TCATGTAAAG	7.6
hg38_ct_MyTrack_6202_13	site	positions_6nt_m1	D	357	366	ACATGTAAAT	8.8
hg38_ct_MyTrack_6202_14	site	positions_6nt_m1	R	-462	-453	TTATGTAAAA	7.7
hg38_ct_MyTrack_6202_14	site	positions_6nt_m1	R	69	78	CGATGTAAAT	9.3
hg38_ct_MyTrack_6202_15	site	positions_6nt_m1	D	187	196	CAATGTAAAT	8.0
hg38_ct_MyTrack_6202_15	site	positions_6nt_m1	D	207	216	CTATGTAAAA	7.7
hg38_ct_MyTrack_6202_16	site	positions_6nt_m1	R	-142	-133	TTATGTAAAA	7.7
hg38_ct_MyTrack_6202_4	site	positions_6nt_m1	R	-214	-205	GAATGTAATT	7.7
hg38_ct_MyTrack_6202_5	site	positions_6nt_m1	R	80	89	AAATGTAAAG	7.9
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	R	-88	-79	GTATGTAAAC	8.3
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	D	-11	-2	GTATGTAACC	7.7
hg38_ct_MyTrack_6202_8	site	positions_6nt_m1	R	215	224	AAACGTAAAC	7.5
hg38_ct_MyTrack_6202_9	site	positions_6nt_m1	D	-109	-100	TAACGTAACG	8.8
hg38_ct_MyTrack_6202_0	site	positions_6nt_m1	R	336	345	ACATGTAATA	8.4
hg38_ct_MyTrack_6202_3	site	positions_6nt_m1	R	-175	-166	CCATGTAAAT	8.0
hg38_ct_MyTrack_6202_3	site	positions_6nt_m1	D	-46	-37	AAATGTAAAA	7.7
hg38_ct_MyTrack_6202_4	site	positions_6nt_m1	R	-295	-286	TCATGTAACG	9.0
hg38_ct_MyTrack_6202_4	site	positions_6nt_m1	R	285	294	CGATGTAATT	8.9
hg38_ct_MyTrack_6202_2	site	positions_6nt_m1	D	-147	-138	ACATGTAATC	8.0
hg38_ct_MyTrack_6202_5	site	positions_6nt_m1	R	203	212	GGATGTAACG	8.5
hg38_ct_MyTrack_6202_6	site	positions_6nt_m1	R	-309	-300	GTATGTAATC	7.9
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	R	-61	-52	ACATGTAACT	8.3
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	D	-43	-34	AAATGTAAAT	8.4
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	D	-17	-8	AAATGTAAAA	7.7
hg38_ct_MyTrack_6202_8	site	positions_6nt_m1	D	-282	-273	ATATGTAAAT	9.2
hg38_ct_MyTrack_6202_9	site	positions_6nt_m1	R	162	171	ATATGTAAAA	8.4
hg38_ct_MyTrack_6202_10	site	positions_6nt_m1	R	172	181	GTATGTAAAG	8.2
hg38_ct_MyTrack_6202_10	site	positions_6nt_m1	D	234	243	ATATGTAATG	8.4
hg38_ct_MyTrack_6202_10	site	positions_6nt_m1	R	280	289	TAATGTAAAA	7.6
hg38_ct_MyTrack_6202_11	site	positions_6nt_m1	D	-429	-420	AAATGTAATT	8.0
hg38_ct_MyTrack_6202_12	site	positions_6nt_m1	R	-57	-48	AAATGTAATT	8.0
hg38_ct_MyTrack_6202_15	site	positions_6nt_m1	R	-57	-48	ATATGTAAGT	8.5
hg38_ct_MyTrack_6202_16	site	positions_6nt_m1	D	463	472	ACATGTAACT	8.3
hg38_ct_MyTrack_6202_17	site	positions_6nt_m1	D	-58	-49	GCATGTAATT	7.8
hg38_ct_MyTrack_6202_18	site	positions_6nt_m1	D	-144	-135	AAATGTAATC	7.6
hg38_ct_MyTrack_6202_20	site	positions_6nt_m1	R	347	356	ACATGTAAAC	8.3
hg38_ct_MyTrack_6202_22	site	positions_6nt_m1	R	292	301	ACATGTAAGA	7.5
hg38_ct_MyTrack_6202_24	site	positions_6nt_m1	R	410	419	CAATGTAATT	7.6
hg38_ct_MyTrack_6202_26	site	positions_6nt_m1	D	-80	-71	CTATGTAAAG	7.9
hg38_ct_MyTrack_6202_26	site	positions_6nt_m1	R	319	328	ACATGTAACT	8.3
hg38_ct_MyTrack_6202_26	site	positions_6nt_m1	D	323	332	ACATGTAAAC	8.3
hg38_ct_MyTrack_6202_27	site	positions_6nt_m1	D	346	355	GAATGTAAAC	7.7
hg38_ct_MyTrack_6202_28	site	positions_6nt_m1	D	31	40	ATATGTAACT	8.7
hg38_ct_MyTrack_6202_0	site	positions_6nt_m1	D	-483	-474	ATATGTAATC	8.3
hg38_ct_MyTrack_6202_0	site	positions_6nt_m1	D	50	59	TTATGTAATT	8.0
hg38_ct_MyTrack_6202_1	site	positions_6nt_m1	D	-297	-288	GAATGTAATT	7.7
hg38_ct_MyTrack_6202_1	site	positions_6nt_m1	R	193	202	TTATGTAAAT	8.4
hg38_ct_MyTrack_6202_1	site	positions_6nt_m1	D	232	241	AAATGTAATT	8.0
hg38_ct_MyTrack_6202_1	site	positions_6nt_m1	R	437	446	CTATGTAATT	8.0
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	D	-148	-139	ACATGTAAGT	8.2
hg38_ct_MyTrack_6202_9	site	positions_6nt_m1	R	-181	-172	CTATGTAAAT	8.5
hg38_ct_MyTrack_6202_9	site	positions_6nt_m1	D	59	68	ACATGTAAAG	8.3
hg38_ct_MyTrack_6202_9	site	positions_6nt_m1	R	246	255	CCATGTAAAC	7.5
hg38_ct_MyTrack_6202_12	site	positions_6nt_m1	R	-4	5	TTATGTAAAG	7.9
hg38_ct_MyTrack_6202_12	site	positions_6nt_m1	R	131	140	ACATGTAATT	8.4
hg38_ct_MyTrack_6202_5	site	positions_6nt_m1	D	-150	-141	ATATGTAATC	8.3
hg38_ct_MyTrack_6202_5	site	positions_6nt_m1	D	-39	-30	GAATGTAATT	7.7
hg38_ct_MyTrack_6202_6	site	positions_6nt_m1	D	151	160	TCATGTAAAT	8.1
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	R	219	228	TTATGTAAAA	7.7
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	D	273	282	AAATGTAAAA	7.7
hg38_ct_MyTrack_6202_11	site	positions_6nt_m1	R	-474	-465	ACATGTAAGA	7.5
hg38_ct_MyTrack_6202_1	site	positions_6nt_m1	D	132	141	TCACGTAACG	8.6
hg38_ct_MyTrack_6202_2	site	positions_6nt_m1	R	-48	-39	AAATGTAAAA	7.7
hg38_ct_MyTrack_6202_2	site	positions_6nt_m1	D	92	101	AAATGTAAAT	8.4
hg38_ct_MyTrack_6202_2	site	positions_6nt_m1	D	102	111	TCATGTAAAT	8.1
hg38_ct_MyTrack_6202_2	site	positions_6nt_m1	D	126	135	AAATGTAAAT	8.4
hg38_ct_MyTrack_6202_2	site	positions_6nt_m1	R	195	204	TTATGTAAAT	8.4
hg38_ct_MyTrack_6202_2	site	positions_6nt_m1	D	399	408	ATACGTAAAT	8.7
hg38_ct_MyTrack_6202_4	site	positions_6nt_m1	D	-95	-86	AAATGTAAAA	7.7
hg38_ct_MyTrack_6202_2	site	positions_6nt_m1	D	454	463	CAATGTAATA	7.5
hg38_ct_MyTrack_6202_3	site	positions_6nt_m1	D	91	100	ATATGTAAGT	8.5
hg38_ct_MyTrack_6202_3	site	positions_6nt_m1	D	272	281	AAATGTAAAC	7.9
hg38_ct_MyTrack_6202_5	site	positions_6nt_m1	R	169	178	AAATGTAAAT	8.4
hg38_ct_MyTrack_6202_0	site	positions_6nt_m1	D	323	332	CTATGTAAAT	8.5
hg38_ct_MyTrack_6202_0	site	positions_6nt_m1	D	379	388	CTACGTAAAT	8.0
hg38_ct_MyTrack_6202_1	site	positions_6nt_m1	R	-30	-21	TCATGTAATA	7.7
hg38_ct_MyTrack_6202_1	site	positions_6nt_m1	R	376	385	ATACGTAAAA	8.0
hg38_ct_MyTrack_6202_4	site	positions_6nt_m1	D	292	301	ACATGTAACA	7.8
hg38_ct_MyTrack_6202_5	site	positions_6nt_m1	D	59	68	ATATGTAAGT	8.5
hg38_ct_MyTrack_6202_6	site	positions_6nt_m1	R	-120	-111	GTATGTAAAG	8.2
hg38_ct_MyTrack_6202_6	site	positions_6nt_m1	D	-104	-95	TTATGTAATC	7.6
hg38_ct_MyTrack_6202_2	site	positions_6nt_m1	R	338	347	CTATGTAATC	7.6
hg38_ct_MyTrack_6202_3	site	positions_6nt_m1	R	296	305	TTATGTAAAT	8.4
hg38_ct_MyTrack_6202_4	site	positions_6nt_m1	R	455	464	ATATGTAACT	8.7
hg38_ct_MyTrack_6202_5	site	positions_6nt_m1	D	-131	-122	CTATGTAATA	8.0
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	D	197	206	ACATGTAAAT	8.8
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	D	294	303	TAATGTAATA	7.9
hg38_ct_MyTrack_6202_8	site	positions_6nt_m1	D	-227	-218	ATATGTAATG	8.4
hg38_ct_MyTrack_6202_0	site	positions_6nt_m1	D	-149	-140	AAATGTAATT	8.0
hg38_ct_MyTrack_6202_0	site	positions_6nt_m1	R	56	65	CTATGTAATT	8.0
hg38_ct_MyTrack_6202_4	site	positions_6nt_m1	R	-261	-252	TAATGTAATT	7.9
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	D	79	88	AAATGTAATC	7.6
hg38_ct_MyTrack_6202_11	site	positions_6nt_m1	R	208	217	AGATGTAATT	7.6
hg38_ct_MyTrack_6202_13	site	positions_6nt_m1	R	-292	-283	TCATGTAAAC	7.6
hg38_ct_MyTrack_6202_14	site	positions_6nt_m1	R	-386	-377	TTATGTAATA	7.9
hg38_ct_MyTrack_6202_14	site	positions_6nt_m1	D	387	396	TAATGTAATG	7.6
hg38_ct_MyTrack_6202_3	site	positions_6nt_m1	R	208	217	AAATGTAAAT	8.4
hg38_ct_MyTrack_6202_5	site	positions_6nt_m1	R	343	352	GTATGTAAAC	8.3
hg38_ct_MyTrack_6202_6	site	positions_6nt_m1	D	177	186	GTATGTAAAA	8.1
hg38_ct_MyTrack_6202_1	site	positions_6nt_m1	R	-138	-129	CTATGTAACT	8.0
hg38_ct_MyTrack_6202_0	site	positions_6nt_m1	D	-94	-85	TTATGTAAAG	7.9
hg38_ct_MyTrack_6202_1	site	positions_6nt_m1	R	-409	-400	ACATGTAACT	8.3
hg38_ct_MyTrack_6202_2	site	positions_6nt_m1	D	-331	-322	CTACGTAACT	7.5
hg38_ct_MyTrack_6202_4	site	positions_6nt_m1	R	-459	-450	GAATGTAAAC	7.7
hg38_ct_MyTrack_6202_4	site	positions_6nt_m1	R	389	398	GAATGTAAAT	8.2
hg38_ct_MyTrack_6202_4	site	positions_6nt_m1	D	437	446	GAATGTAATT	7.7
hg38_ct_MyTrack_6202_7	site	positions_6nt_m1	D	92	101	TCATGTAAAT	8.1
hg38_ct_MyTrack_6202_2	site	positions_6nt_m1	D	-228	-219	TAATGTAAAA	7.6
hg38_ct_MyTrack_6202_5	site	positions_6nt_m1	R	-352	-343	CAATGTAAAT	8.0
hg38_ct_MyTrack_6202_0	site	positions_6nt_m1	R	335	344	CAATGTAATT	7.6
hg38_ct_MyTrack_6202_0	site	positions_6nt_m1	R	177	186	ACATGTAATT	8.4
hg38_ct_MyTrack_6202_1	site	positions_6nt_m1	D	239	248	GTATGTAATT	8.4
hg38_ct_MyTrack_6202_2	site	positions_6nt_m1	D	103	112	ATACGTAATT	8.3
hg38_ct_MyTrack_6202_3	site	positions_6nt_m1	R	-395	-386	ATATGTAAAT	9.2
hg38_ct_MyTrack_6202_10	site	positions_6nt_m1	D	-119	-110	AAATGTAAAT	8.4
hg38_ct_MyTrack_6202_1	site	positions_6nt_m1	D	-149	-140	AAATGTAATT	8.0
hg38_ct_MyTrack_6202_1	site	positions_6nt_m1	R	56	65	CTATGTAATT	8.0
hg38_ct_MyTrack_6202_4	site	positions_6nt_m1	R	-53	-44	TTATGTAATT	8.0
hg38_ct_MyTrack_6202_4	site	positions_6nt_m1	R	320	329	ACATGTAATG	8.1
hg38_ct_MyTrack_6202_2	site	positions_6nt_m1	R	137	146	GCATGTAATT	7.8
hg38_ct_MyTrack_6202_0	site	positions_6nt_m1	D	-247	-238	AAATGTAATC	7.6
hg38_ct_MyTrack_6202_1	site	positions_6nt_m1	R	88	97	TTATGTAAAG	7.9
hg38_ct_MyTrack_6202_0	site	positions_6nt_m1	R	219	228	TAATGTAAAA	7.6
;
; Matrices
;	matrix	name            	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	positions_6nt_m1	10	4	0	-29.800	8.500	38.300	a:0.296 c:0.204 g:0.202 t:0.298 
; Number of sequences scanned	226
; Sum of sequence lengths	226000
; N residues           	0
; Matches per matrix
;	matrix	name            	matches	scored
;	1	positions_6nt_m1	154	0
;		TOTAL          	154	0
; Host name	rsat
; Job started	2026-02-26.200825
; Job done	2026-02-26.200825
; Seconds	0.21
;	user	0.21
;	system	0.02
;	cuser	0.1
;	csystem	0.03
