AC  assembly_1
XX
ID  ataaaataat
XX
DE  nnATAAAATAATnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         8.27      0.00      0.00      0.00
4         0.00      0.00      0.00     24.69
5        25.10      0.00      0.00      0.00
6        25.10      0.00      0.00      0.00
7        25.10      0.00      0.00      0.00
8        25.10      0.00      0.00      0.00
9         0.00      0.00      0.00     25.10
10       25.10      0.00      0.00      0.00
11       18.65      0.00      0.00      0.00
12        0.00      0.00      0.00      7.59
13        0.00      0.00      0.00      0.00
14        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 1
CC  id: assembly_1
CC  name: ataaaataat
CC  asmb.seed: aaaata
CC  matrix.nb: 1
CC  sites: 8
CC  consensus.strict: --ATAAAATAAT--
CC  consensus.strict.rc: --ATTATTTTAT--
CC  consensus.IUPAC: nnATAAAATAATnn
CC  consensus.IUPAC.rc: NNATTATTTTATNN
CC  consensus.regexp: [acgt][acgt]ATAAAATAAT[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]ATTATTTTAT[ACGT][ACGT]
XX
//
AC  assembly_2
XX
ID  agaaataa
XX
DE  nnAGAAATAAnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         6.04      0.00      0.00      0.00
4         0.00      0.00     15.93      0.00
5        18.65      0.00      0.00      0.00
6        18.65      0.00      0.00      0.00
7        18.65      0.00      0.00      0.00
8         0.00      0.00      0.00     18.65
9        18.65      0.00      0.00      0.00
10       18.65      0.00      0.00      0.00
11        0.00      0.00      0.00      0.00
12        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 2
CC  id: assembly_2
CC  name: agaaataa
CC  asmb.seed: gaaata
CC  matrix.nb: 2
CC  sites: 3
CC  consensus.strict: --AGAAATAA--
CC  consensus.strict.rc: --TTATTTCT--
CC  consensus.IUPAC: nnAGAAATAAnn
CC  consensus.IUPAC.rc: NNTTATTTCTNN
CC  consensus.regexp: [acgt][acgt]AGAAATAA[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TTATTTCT[ACGT][ACGT]
XX
//
AC  assembly_3
XX
ID  acccaggca
XX
DE  nnACCCAGGCAnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         7.10      0.00      0.00      0.00
4         0.00     13.33      0.00      0.00
5         0.00     15.32      0.00      0.00
6         0.00     15.32      0.00      0.00
7        15.32      0.00      0.00      0.00
8         0.00      0.00     15.32      0.00
9         0.00      0.00     15.32      0.00
10        0.00     15.32      0.00      0.00
11        5.89      0.00      0.00      0.00
12        0.00      0.00      0.00      0.00
13        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 3
CC  id: assembly_3
CC  name: acccaggca
CC  asmb.seed: ccaggc
CC  matrix.nb: 3
CC  sites: 4
CC  consensus.strict: --ACCCAGGCA--
CC  consensus.strict.rc: --TGCCTGGGT--
CC  consensus.IUPAC: nnACCCAGGCAnn
CC  consensus.IUPAC.rc: NNTGCCTGGGTNN
CC  consensus.regexp: [acgt][acgt]ACCCAGGCA[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TGCCTGGGT[ACGT][ACGT]
XX
//
AC  assembly_4
XX
ID  ccctcctccccctcccca
XX
DE  nnCCCTCCTCCCCCTCCCCAnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00      5.88      0.00      0.00
4         0.00     10.27      0.00      0.00
5         0.00     10.27      0.00      0.00
6         0.00      0.00      0.00     10.27
7         0.00     14.58      0.00      0.00
8         0.00     14.58      0.00      0.00
9         0.00      0.00      0.00     14.58
10        0.00     14.58      0.00      0.00
11        0.00     14.58      0.00      0.00
12        0.00     14.58      0.00      0.00
13        0.00     12.05      0.00      0.00
14        0.00     13.52      0.00      0.00
15        0.00      0.00      0.00     13.52
16        0.00     14.49      0.00      0.00
17        0.00     14.49      0.00      0.00
18        0.00     14.49      0.00      0.00
19        0.00      9.53      0.00      0.00
20        7.02      0.00      0.00      0.00
21        0.00      0.00      0.00      0.00
22        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 4
CC  id: assembly_4
CC  name: ccctcctccccctcccca
CC  asmb.seed: cctccc
CC  matrix.nb: 4
CC  sites: 23
CC  consensus.strict: --CCCTCCTCCCCCTCCCCA--
CC  consensus.strict.rc: --TGGGGAGGGGGAGGAGGG--
CC  consensus.IUPAC: nnCCCTCCTCCCCCTCCCCAnn
CC  consensus.IUPAC.rc: NNTGGGGAGGGGGAGGAGGGNN
CC  consensus.regexp: [acgt][acgt]CCCTCCTCCCCCTCCCCA[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TGGGGAGGGGGAGGAGGG[ACGT][ACGT]
XX
//
AC  assembly_5
XX
ID  cccacc
XX
DE  nnCCCACCnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00     14.53      0.00      0.00
4         0.00     14.53      0.00      0.00
5         0.00     14.53      0.00      0.00
6        14.53      0.00      0.00      0.00
7         0.00     14.53      0.00      0.00
8         0.00     14.53      0.00      0.00
9         0.00      0.00      0.00      0.00
10        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 5
CC  id: assembly_5
CC  name: cccacc
CC  asmb.seed: cccacc
CC  matrix.nb: 5
CC  sites: 1
CC  consensus.strict: --CCCACC--
CC  consensus.strict.rc: --GGTGGG--
CC  consensus.IUPAC: nnCCCACCnn
CC  consensus.IUPAC.rc: NNGGTGGGNN
CC  consensus.regexp: [acgt][acgt]CCCACC[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]GGTGGG[ACGT][ACGT]
XX
//
AC  assembly_6
XX
ID  aatgta
XX
DE  nnAATGTAnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3        13.28      0.00      0.00      0.00
4        13.28      0.00      0.00      0.00
5         0.00      0.00      0.00     13.28
6         0.00      0.00     13.28      0.00
7         0.00      0.00      0.00     13.28
8        13.28      0.00      0.00      0.00
9         0.00      0.00      0.00      0.00
10        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 6
CC  id: assembly_6
CC  name: aatgta
CC  asmb.seed: aatgta
CC  matrix.nb: 6
CC  sites: 1
CC  consensus.strict: --AATGTA--
CC  consensus.strict.rc: --TACATT--
CC  consensus.IUPAC: nnAATGTAnn
CC  consensus.IUPAC.rc: NNTACATTNN
CC  consensus.regexp: [acgt][acgt]AATGTA[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TACATT[ACGT][ACGT]
XX
//
AC  assembly_7
XX
ID  agagaa
XX
DE  nnAGAGAAnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3        12.60      0.00      0.00      0.00
4         0.00      0.00     12.60      0.00
5        12.60      0.00      0.00      0.00
6         0.00      0.00     12.60      0.00
7        12.60      0.00      0.00      0.00
8        12.60      0.00      0.00      0.00
9         0.00      0.00      0.00      0.00
10        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 7
CC  id: assembly_7
CC  name: agagaa
CC  asmb.seed: agagaa
CC  matrix.nb: 7
CC  sites: 1
CC  consensus.strict: --AGAGAA--
CC  consensus.strict.rc: --TTCTCT--
CC  consensus.IUPAC: nnAGAGAAnn
CC  consensus.IUPAC.rc: NNTTCTCTNN
CC  consensus.regexp: [acgt][acgt]AGAGAA[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TTCTCT[ACGT][ACGT]
XX
//
AC  assembly_8
XX
ID  aacaaa
XX
DE  nnAACAAAnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3        12.30      0.00      0.00      0.00
4        12.30      0.00      0.00      0.00
5         0.00     12.30      0.00      0.00
6        12.30      0.00      0.00      0.00
7        12.30      0.00      0.00      0.00
8        12.30      0.00      0.00      0.00
9         0.00      0.00      0.00      0.00
10        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 8
CC  id: assembly_8
CC  name: aacaaa
CC  asmb.seed: aacaaa
CC  matrix.nb: 8
CC  sites: 1
CC  consensus.strict: --AACAAA--
CC  consensus.strict.rc: --TTTGTT--
CC  consensus.IUPAC: nnAACAAAnn
CC  consensus.IUPAC.rc: NNTTTGTTNN
CC  consensus.regexp: [acgt][acgt]AACAAA[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TTTGTT[ACGT][ACGT]
XX
//
AC  assembly_9
XX
ID  ccccccagccca
XX
DE  nnCCCCCCAGCCCAnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00      5.88      0.00      0.00
4         0.00      9.53      0.00      0.00
5         0.00     10.10      0.00      0.00
6         0.00     12.05      0.00      0.00
7         0.00     12.05      0.00      0.00
8         0.00     12.05      0.00      0.00
9        11.74      0.00      0.00      0.00
10        0.00      0.00     11.74      0.00
11        0.00     12.05      0.00      0.00
12        0.00     12.05      0.00      0.00
13        0.00     12.05      0.00      0.00
14        7.02      0.00      0.00      0.00
15        0.00      0.00      0.00      0.00
16        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 9
CC  id: assembly_9
CC  name: ccccccagccca
CC  asmb.seed: cccagc
CC  matrix.nb: 9
CC  sites: 9
CC  consensus.strict: --CCCCCCAGCCCA--
CC  consensus.strict.rc: --TGGGCTGGGGGG--
CC  consensus.IUPAC: nnCCCCCCAGCCCAnn
CC  consensus.IUPAC.rc: NNTGGGCTGGGGGGNN
CC  consensus.regexp: [acgt][acgt]CCCCCCAGCCCA[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TGGGCTGGGGGG[ACGT][ACGT]
XX
//
AC  assembly_10
XX
ID  ataaaataaataa
XX
DE  nnATAAAATAAATAAnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         8.27      0.00      0.00      0.00
4         0.00      0.00      0.00     24.69
5        25.10      0.00      0.00      0.00
6        25.10      0.00      0.00      0.00
7        25.10      0.00      0.00      0.00
8        25.10      0.00      0.00      0.00
9         0.00      0.00      0.00     25.10
10       25.10      0.00      0.00      0.00
11       18.65      0.00      0.00      0.00
12       18.65      0.00      0.00      0.00
13        0.00      0.00      0.00     18.65
14       18.65      0.00      0.00      0.00
15       18.65      0.00      0.00      0.00
16        0.00      0.00      0.00      0.00
17        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 10
CC  id: assembly_10
CC  name: ataaaataaataa
CC  asmb.seed: taaata
CC  matrix.nb: 10
CC  sites: 10
CC  consensus.strict: --ATAAAATAAATAA--
CC  consensus.strict.rc: --TTATTTATTTTAT--
CC  consensus.IUPAC: nnATAAAATAAATAAnn
CC  consensus.IUPAC.rc: NNTTATTTATTTTATNN
CC  consensus.regexp: [acgt][acgt]ATAAAATAAATAA[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TTATTTATTTTAT[ACGT][ACGT]
XX
//
