; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_8nt_mkv5_m2/peak-motifs_oligos_8nt_mkv5_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_8nt_mkv5_m2/peak-motifs_oligos_8nt_mkv5_m2_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_8nt_mkv5_m2/peak-motifs_oligos_8nt_mkv5_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_8nt_mkv5_m2/peak-motifs_oligos_8nt_mkv5_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29599
;		c	0.20450
;		g	0.20176
;		t	0.29775
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m2	D	-16	-5	CTAGAGTGCAAT	8.1
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m2	R	154	165	CGGGAGTTCGAG	8.5
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m2	D	305	316	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_4	site	oligos_8nt_mkv5_m2	R	258	269	CAGGCGTGCACC	9.0
hg38_ct_MyTrack_6202_4	site	oligos_8nt_mkv5_m2	R	348	359	CTGGAGTGCATT	10.5
hg38_ct_MyTrack_6202_8	site	oligos_8nt_mkv5_m2	R	449	460	CTGGAGTGTAGT	8.1
hg38_ct_MyTrack_6202_9	site	oligos_8nt_mkv5_m2	R	420	431	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_11	site	oligos_8nt_mkv5_m2	R	-58	-47	GAGGAGCGCACA	8.2
hg38_ct_MyTrack_6202_5	site	oligos_8nt_mkv5_m2	R	-462	-451	TTGGAGCGCAAG	8.0
hg38_ct_MyTrack_6202_5	site	oligos_8nt_mkv5_m2	D	-98	-87	CTGGAGTGCATG	10.4
hg38_ct_MyTrack_6202_5	site	oligos_8nt_mkv5_m2	R	-49	-38	ATGGAGTTCACT	7.6
hg38_ct_MyTrack_6202_10	site	oligos_8nt_mkv5_m2	R	-152	-141	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_11	site	oligos_8nt_mkv5_m2	R	-254	-243	GGGGAGTGCACT	9.8
hg38_ct_MyTrack_6202_13	site	oligos_8nt_mkv5_m2	R	-211	-200	CGGGTGTGCGCA	8.3
hg38_ct_MyTrack_6202_14	site	oligos_8nt_mkv5_m2	D	215	226	CTGGAGTGCGGT	10.8
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m2	D	256	267	CGGGAGGGCAGA	9.5
hg38_ct_MyTrack_6202_6	site	oligos_8nt_mkv5_m2	R	-301	-290	CTGGAGTGGAGG	8.3
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m2	D	79	90	CTGGAGTGTAGT	8.1
hg38_ct_MyTrack_6202_9	site	oligos_8nt_mkv5_m2	D	-226	-215	CTGGAATGCACT	7.8
hg38_ct_MyTrack_6202_9	site	oligos_8nt_mkv5_m2	R	301	312	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_10	site	oligos_8nt_mkv5_m2	R	-386	-375	CCGGATTGCAGC	8.6
hg38_ct_MyTrack_6202_1	site	oligos_8nt_mkv5_m2	D	-484	-473	GGGGAGTGCCGG	7.9
hg38_ct_MyTrack_6202_1	site	oligos_8nt_mkv5_m2	D	434	445	CGGGGGTGCATC	8.6
hg38_ct_MyTrack_6202_2	site	oligos_8nt_mkv5_m2	D	-407	-396	CAGGGGTGCAGA	7.6
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m2	R	-375	-364	CTGGAGTTCAAT	8.3
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m2	R	-357	-346	CTGGAGTTCAAG	8.0
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m2	D	159	170	CAGGACTGCACT	7.9
hg38_ct_MyTrack_6202_8	site	oligos_8nt_mkv5_m2	D	225	236	TTGGAGTGCAGT	10.4
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	D	357	368	CCGCAGTGCACC	8.3
hg38_ct_MyTrack_6202_6	site	oligos_8nt_mkv5_m2	R	427	438	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_12	site	oligos_8nt_mkv5_m2	R	461	472	CGCGTGTGCAGC	8.8
hg38_ct_MyTrack_6202_13	site	oligos_8nt_mkv5_m2	D	-448	-437	CAGGAGTTCACT	8.0
hg38_ct_MyTrack_6202_14	site	oligos_8nt_mkv5_m2	R	10	21	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_16	site	oligos_8nt_mkv5_m2	R	-430	-419	ATGCAGTGCAGT	8.0
hg38_ct_MyTrack_6202_19	site	oligos_8nt_mkv5_m2	D	-149	-138	CTGGAGTGAAGG	8.1
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	D	330	341	GTGGAGTGCGTC	8.6
hg38_ct_MyTrack_6202_6	site	oligos_8nt_mkv5_m2	R	-338	-327	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m2	D	190	201	CAGGAGTGCAGC	10.7
hg38_ct_MyTrack_6202_8	site	oligos_8nt_mkv5_m2	R	-242	-231	CTGGATTGCAGT	8.5
hg38_ct_MyTrack_6202_8	site	oligos_8nt_mkv5_m2	R	297	308	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_10	site	oligos_8nt_mkv5_m2	R	-99	-88	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_11	site	oligos_8nt_mkv5_m2	D	158	169	GTGGCGTGCGCC	7.7
hg38_ct_MyTrack_6202_11	site	oligos_8nt_mkv5_m2	R	254	265	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_1	site	oligos_8nt_mkv5_m2	D	377	388	CAGGATTGCAGT	8.0
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m2	D	263	274	CAGGAGCGCAGG	9.9
hg38_ct_MyTrack_6202_8	site	oligos_8nt_mkv5_m2	R	-334	-323	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_8	site	oligos_8nt_mkv5_m2	D	127	138	CTGGAGAGCAGT	8.5
hg38_ct_MyTrack_6202_1	site	oligos_8nt_mkv5_m2	R	-238	-227	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	R	-40	-29	GCGGACTGCAGT	9.2
hg38_ct_MyTrack_6202_1	site	oligos_8nt_mkv5_m2	D	-355	-344	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_1	site	oligos_8nt_mkv5_m2	R	244	255	CTGGAGTGCATT	10.5
hg38_ct_MyTrack_6202_4	site	oligos_8nt_mkv5_m2	D	-401	-390	GTGGAGTTCAGC	8.1
hg38_ct_MyTrack_6202_5	site	oligos_8nt_mkv5_m2	R	-298	-287	CTGGAGTGCAGC	11.2
hg38_ct_MyTrack_6202_6	site	oligos_8nt_mkv5_m2	R	-488	-477	CCGGAGTGCTCG	8.8
hg38_ct_MyTrack_6202_6	site	oligos_8nt_mkv5_m2	D	274	285	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m2	D	-284	-273	CTGCAGTGCAGT	8.9
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m2	R	472	483	CAGGTGTGCACC	7.5
hg38_ct_MyTrack_6202_2	site	oligos_8nt_mkv5_m2	R	148	159	AAGGAGTGCAGA	9.4
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m2	R	142	153	ATGGAGTGCAGT	10.9
hg38_ct_MyTrack_6202_4	site	oligos_8nt_mkv5_m2	R	-44	-33	TTGGAGCGCACG	10.2
hg38_ct_MyTrack_6202_5	site	oligos_8nt_mkv5_m2	D	162	173	CGGGAGTGCAGT	13.3
hg38_ct_MyTrack_6202_5	site	oligos_8nt_mkv5_m2	D	349	360	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_6	site	oligos_8nt_mkv5_m2	R	-13	-2	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m2	D	-243	-232	CTAGAGTGCAGT	9.2
hg38_ct_MyTrack_6202_1	site	oligos_8nt_mkv5_m2	R	-241	-230	CCGGGGTGCAGT	9.5
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m2	R	426	437	CTGCAGTGCACA	7.5
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m2	R	431	442	TTGGACTGCAGT	7.8
hg38_ct_MyTrack_6202_4	site	oligos_8nt_mkv5_m2	D	-104	-93	CTGGAATGCAGT	8.6
hg38_ct_MyTrack_6202_5	site	oligos_8nt_mkv5_m2	R	411	422	CTGGAGTGCAAT	10.8
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	D	324	335	CTGCAGTGCACA	7.5
hg38_ct_MyTrack_6202_2	site	oligos_8nt_mkv5_m2	R	167	178	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_6	site	oligos_8nt_mkv5_m2	D	-52	-41	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_6	site	oligos_8nt_mkv5_m2	D	67	78	CAGGTGTGCACC	7.5
hg38_ct_MyTrack_6202_6	site	oligos_8nt_mkv5_m2	D	486	497	GTGGGGTGCAGC	7.5
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m2	R	-288	-277	CTGGAGTGCAAT	10.8
hg38_ct_MyTrack_6202_10	site	oligos_8nt_mkv5_m2	D	198	209	TAGGAGTGCAGC	9.7
hg38_ct_MyTrack_6202_1	site	oligos_8nt_mkv5_m2	D	-340	-329	CTGGAGTACATG	7.6
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	R	152	163	CTAGAGTGCGGT	8.1
hg38_ct_MyTrack_6202_1	site	oligos_8nt_mkv5_m2	D	-434	-423	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_1	site	oligos_8nt_mkv5_m2	D	-206	-195	CTGGAGTGCATT	10.5
hg38_ct_MyTrack_6202_1	site	oligos_8nt_mkv5_m2	R	319	330	TTGGAGTGCAAT	9.4
hg38_ct_MyTrack_6202_2	site	oligos_8nt_mkv5_m2	R	-408	-397	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_5	site	oligos_8nt_mkv5_m2	D	-172	-161	CGGGAGTGCACA	11.9
hg38_ct_MyTrack_6202_6	site	oligos_8nt_mkv5_m2	D	224	235	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	D	-156	-145	CTGGAGTACAGT	9.0
hg38_ct_MyTrack_6202_1	site	oligos_8nt_mkv5_m2	R	-193	-182	GCGGAGTTCAGA	8.7
hg38_ct_MyTrack_6202_2	site	oligos_8nt_mkv5_m2	R	-201	-190	GGGGAGGGCAGT	7.6
hg38_ct_MyTrack_6202_2	site	oligos_8nt_mkv5_m2	D	386	397	CTGGACTGCAGT	9.2
hg38_ct_MyTrack_6202_4	site	oligos_8nt_mkv5_m2	D	-128	-117	CTGGGGTGCAGA	8.1
hg38_ct_MyTrack_6202_5	site	oligos_8nt_mkv5_m2	R	-180	-169	CGGGAGAGCAAT	8.9
hg38_ct_MyTrack_6202_5	site	oligos_8nt_mkv5_m2	R	174	185	CGGGAGTGAATG	8.5
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m2	D	453	464	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_1	site	oligos_8nt_mkv5_m2	R	-291	-280	CTGGCGTGCAGT	10.8
hg38_ct_MyTrack_6202_6	site	oligos_8nt_mkv5_m2	D	56	67	CCGGAGTGCAGG	12.1
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m2	R	-155	-144	CTGGAGTGCAAT	10.8
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	R	-127	-116	CTGGAGTGCAAA	10.0
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	R	76	87	GCGGAGTCCAGG	8.3
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	D	354	365	CTGGAGTGCAAT	10.8
hg38_ct_MyTrack_6202_2	site	oligos_8nt_mkv5_m2	D	465	476	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_5	site	oligos_8nt_mkv5_m2	R	-211	-200	ATCGAGTGCAGA	8.7
hg38_ct_MyTrack_6202_5	site	oligos_8nt_mkv5_m2	R	-142	-131	CGGGACGGCATT	8.3
hg38_ct_MyTrack_6202_5	site	oligos_8nt_mkv5_m2	D	93	104	GCGGTGCGCAGA	7.8
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m2	R	220	231	CTGGAGTGCACT	11.0
hg38_ct_MyTrack_6202_4	site	oligos_8nt_mkv5_m2	R	-388	-377	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	D	-121	-110	TTGGAGTGCAGC	9.8
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	D	400	411	CTGGAGTGCAGT	11.8
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	R	-201	-190	GGGGAGGGCAGT	7.6
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	D	386	397	CTGGACTGCAGT	9.2
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	R	-211	-200	ATCGAGTGCAGA	8.7
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	R	-142	-131	CGGGACGGCATT	8.3
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	D	93	104	GCGGTGCGCAGA	7.8
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	R	-211	-200	ATCGAGTGCAGA	8.7
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	R	-142	-131	CGGGACGGCATT	8.3
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	D	93	104	GCGGTGCGCAGA	7.8
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	R	-211	-200	ATCGAGTGCAGA	8.7
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	R	-142	-131	CGGGACGGCATT	8.3
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	D	93	104	GCGGTGCGCAGA	7.8
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	R	-211	-200	ATCGAGTGCAGA	8.7
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	R	-142	-131	CGGGACGGCATT	8.3
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m2	D	93	104	GCGGTGCGCAGA	7.8
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_8nt_mkv5_m2	12	4	0	-21.700	12.800	34.500	a:0.296 c:0.204 g:0.202 t:0.298 
; Number of sequences scanned	226
; Sum of sequence lengths	226000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_8nt_mkv5_m2	120	0
;		TOTAL          	120	0
; Host name	rsat
; Job started	2026-02-26.200830
; Job done	2026-02-26.200830
; Seconds	0.2
;	user	0.2
;	system	0.02
;	cuser	0.08
;	csystem	0.03
