; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_8nt_mkv5_m1/peak-motifs_oligos_8nt_mkv5_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_8nt_mkv5_m1/peak-motifs_oligos_8nt_mkv5_m1_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_8nt_mkv5_m1/peak-motifs_oligos_8nt_mkv5_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_8nt_mkv5_m1/peak-motifs_oligos_8nt_mkv5_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29599
;		c	0.20450
;		g	0.20176
;		t	0.29775
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
hg38_ct_MyTrack_6202_2	site	oligos_8nt_mkv5_m1	R	355	366	CGGATTTTACAT	8.3
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m1	R	-267	-256	ACCATTTTACTG	8.8
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m1	R	254	265	CTCATTTTACTA	9.7
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m1	R	394	405	CACATTTTACCC	8.9
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m1	R	472	483	AACATTTTATAA	7.9
hg38_ct_MyTrack_6202_10	site	oligos_8nt_mkv5_m1	R	60	71	TACATTTTACCA	9.6
hg38_ct_MyTrack_6202_2	site	oligos_8nt_mkv5_m1	D	-132	-121	CCCATTTTACAG	8.8
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m1	R	253	264	CACATTTTACCC	8.9
hg38_ct_MyTrack_6202_4	site	oligos_8nt_mkv5_m1	D	284	295	TACATTTTAATT	7.6
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m1	D	408	419	TTCATTTTACAT	10.0
hg38_ct_MyTrack_6202_9	site	oligos_8nt_mkv5_m1	R	25	36	CCCATTTTACAG	8.8
hg38_ct_MyTrack_6202_11	site	oligos_8nt_mkv5_m1	D	154	165	TCCATTTTACAG	9.2
hg38_ct_MyTrack_6202_11	site	oligos_8nt_mkv5_m1	D	178	189	TCCATTTTACAG	9.2
hg38_ct_MyTrack_6202_11	site	oligos_8nt_mkv5_m1	D	202	213	TCCATTTTACAG	9.2
hg38_ct_MyTrack_6202_11	site	oligos_8nt_mkv5_m1	D	226	237	TCCATTTTACAA	9.4
hg38_ct_MyTrack_6202_11	site	oligos_8nt_mkv5_m1	D	293	304	AGCATTTTACAA	9.3
hg38_ct_MyTrack_6202_14	site	oligos_8nt_mkv5_m1	D	-374	-363	AACATTTTACAA	9.6
hg38_ct_MyTrack_6202_16	site	oligos_8nt_mkv5_m1	D	-146	-135	AGCATTTTACAT	9.5
hg38_ct_MyTrack_6202_4	site	oligos_8nt_mkv5_m1	D	-433	-422	ATCATTTTATAT	8.2
hg38_ct_MyTrack_6202_4	site	oligos_8nt_mkv5_m1	R	-215	-204	TACATTTTATTA	8.3
hg38_ct_MyTrack_6202_6	site	oligos_8nt_mkv5_m1	R	-495	-484	CACATTTTATAT	8.2
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m1	R	-385	-374	TTAATTTTACGA	7.6
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m1	R	474	485	AGCATTTTATAC	7.8
hg38_ct_MyTrack_6202_5	site	oligos_8nt_mkv5_m1	R	50	61	GGCATTTTATAA	7.6
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m1	R	-22	-11	TACATTTTATTT	7.9
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m1	R	-15	-4	TGCATTTTACAT	9.8
hg38_ct_MyTrack_6202_8	site	oligos_8nt_mkv5_m1	R	-127	-116	TACATTTTAGTA	7.7
hg38_ct_MyTrack_6202_11	site	oligos_8nt_mkv5_m1	R	-172	-161	TGCATTTTACAG	9.3
hg38_ct_MyTrack_6202_12	site	oligos_8nt_mkv5_m1	D	-414	-403	TTCATTTTACTT	9.5
hg38_ct_MyTrack_6202_12	site	oligos_8nt_mkv5_m1	R	184	195	TGCATTTTATAG	7.6
hg38_ct_MyTrack_6202_14	site	oligos_8nt_mkv5_m1	D	-430	-419	AGCATTTTACCC	8.5
hg38_ct_MyTrack_6202_20	site	oligos_8nt_mkv5_m1	R	-319	-308	TACATTTTCCAT	7.7
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m1	D	-273	-262	CACATTTTATAT	8.2
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m1	R	16	27	TCCATTTTACCC	8.6
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m1	R	284	295	CTCATTTTACTA	9.7
hg38_ct_MyTrack_6202_4	site	oligos_8nt_mkv5_m1	D	-81	-70	TCCATTTTATAC	8.0
hg38_ct_MyTrack_6202_5	site	oligos_8nt_mkv5_m1	R	-407	-396	AACATTTTACGT	10.6
hg38_ct_MyTrack_6202_6	site	oligos_8nt_mkv5_m1	D	-63	-52	AGCATTTTACAA	9.3
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m1	R	-479	-468	CTCATTTTACCT	8.9
hg38_ct_MyTrack_6202_7	site	oligos_8nt_mkv5_m1	D	259	270	TCCATTTTACCT	8.7
hg38_ct_MyTrack_6202_9	site	oligos_8nt_mkv5_m1	D	327	338	ACCATTTTACGT	10.4
hg38_ct_MyTrack_6202_13	site	oligos_8nt_mkv5_m1	R	-158	-147	TTCATTTTATTA	7.8
hg38_ct_MyTrack_6202_13	site	oligos_8nt_mkv5_m1	D	409	420	TTCATTTTATAG	7.8
hg38_ct_MyTrack_6202_1	site	oligos_8nt_mkv5_m1	D	227	238	CACATTTTACTC	9.5
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m1	D	211	222	TACATTTTCCAC	7.7
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m1	D	346	357	TACATTTTACCC	9.5
hg38_ct_MyTrack_6202_8	site	oligos_8nt_mkv5_m1	D	303	314	CCCATTTTACAG	8.8
hg38_ct_MyTrack_6202_0	site	oligos_8nt_mkv5_m1	D	173	184	TTCATTTTACAG	9.5
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m1	D	-142	-131	TGCATTTTACCC	8.8
hg38_ct_MyTrack_6202_1	site	oligos_8nt_mkv5_m1	D	-316	-305	CTCATTTTACAG	9.3
hg38_ct_MyTrack_6202_1	site	oligos_8nt_mkv5_m1	R	-310	-299	AGCATTTTATAC	7.8
hg38_ct_MyTrack_6202_1	site	oligos_8nt_mkv5_m1	R	-181	-170	TTCATTTTACAG	9.5
hg38_ct_MyTrack_6202_3	site	oligos_8nt_mkv5_m1	R	-396	-385	CTCATTTTACTC	9.4
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_8nt_mkv5_m1	12	4	0	-20.200	10.100	30.300	a:0.296 c:0.204 g:0.202 t:0.298 
; Number of sequences scanned	226
; Sum of sequence lengths	226000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_8nt_mkv5_m1	53	0
;		TOTAL          	53	0
; Host name	rsat
; Job started	2026-02-26.200829
; Job done	2026-02-26.200829
; Seconds	0.2
;	user	0.2
;	system	0.02
;	cuser	0.07
;	csystem	0.02
