; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_6nt_mkv3_m2/peak-motifs_oligos_6nt_mkv3_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29599
;		c	0.20450
;		g	0.20176
;		t	0.29775
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m2	D	35	44	TCAAGCGATT	7.6
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m2	R	303	312	TCAAGCGATT	7.6
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m2	D	-65	-56	TCAAGCAATT	7.7
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m2	D	71	80	TCAAGCGATC	7.5
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m2	D	-366	-357	TTAAGCAATA	7.8
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m2	R	450	459	ACAAGCAAAA	7.6
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m2	D	-100	-91	AGAAGCAATA	7.8
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m2	R	-474	-465	TCAAGCAATT	7.7
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m2	D	235	244	ACAAGCAAAG	7.5
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m2	R	467	476	ACAAGCAACA	7.8
hg38_ct_MyTrack_6202_14	site	oligos_6nt_mkv3_m2	D	266	275	TCAAGCAATT	7.7
hg38_ct_MyTrack_6202_15	site	oligos_6nt_mkv3_m2	R	396	405	ATAAGCAACA	7.5
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m2	D	-278	-269	ATAAGCAATT	7.7
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m2	D	152	161	TAAAGCAAAC	7.6
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m2	D	-403	-394	AAAAGCAATA	7.9
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m2	R	119	128	TCAAGCAATC	7.6
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m2	R	477	486	TCAAGCAATT	7.7
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m2	D	411	420	ACAAGCAATC	7.9
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m2	R	114	123	TAAAGCAATT	7.8
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m2	D	441	450	TCAAGCAACT	7.5
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m2	D	-228	-219	TAAAGCGATG	7.6
hg38_ct_MyTrack_6202_22	site	oligos_6nt_mkv3_m2	R	215	224	AGAAGCAATA	7.8
hg38_ct_MyTrack_6202_22	site	oligos_6nt_mkv3_m2	D	447	456	TAAAGCAATA	8.2
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m2	R	131	140	ACAAGCAACT	7.8
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m2	D	-88	-79	ACAAGCAATT	7.9
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m2	R	124	133	TAAAGCAAAT	7.7
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m2	R	-133	-124	ATAAGCAACA	7.5
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m2	D	388	397	ACAAGCAAAG	7.5
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m2	R	490	499	TCAAGCAATC	7.6
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m2	D	-348	-339	TCAAGCAATC	7.6
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m2	D	-227	-218	ACAAGCAATT	7.9
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m2	D	-218	-209	TCAAGCAACA	7.5
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m2	R	-387	-378	TCAAGCAATT	7.7
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m2	R	-47	-38	GAAAGCAATA	7.6
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m2	D	244	253	TCAAGCAATT	7.7
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m2	R	-291	-282	TCAAGCGATT	7.6
hg38_ct_MyTrack_6202_10	site	oligos_6nt_mkv3_m2	R	324	333	GTAAGCAATA	7.8
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m2	R	-382	-373	TCAAGCAATC	7.6
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m2	D	178	187	TCAAGCAATC	7.6
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m2	R	57	66	ACAAGCAACA	7.8
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m2	D	376	385	TAAAGCAACA	7.6
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m2	R	-287	-278	TCAAGCAATT	7.7
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m2	D	-233	-224	ATAAGCAAAT	7.5
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m2	D	-306	-297	TAAAGCAATG	7.7
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m2	D	-476	-467	ACAAGCAATA	8.3
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m2	R	-347	-338	TCAAGCGATT	7.6
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m2	D	-233	-224	TCAAGCGATT	7.6
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m2	R	-108	-99	ACAAGCAAAG	7.5
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m2	R	246	255	ACAAGCAATA	8.3
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m2	D	-280	-271	ACAAGCAAAA	7.6
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m2	D	138	147	TAAAGCAACA	7.6
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m2	D	219	228	TGAAGCAATA	7.7
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m2	R	-112	-103	TAAAGCAAAT	7.7
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m2	R	-46	-37	TAAAGCAAGT	7.6
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m2	D	213	222	TCAAGCGATT	7.6
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m2	D	400	409	TCAAGCAATT	7.7
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m2	R	96	105	TCAAGCAATC	7.6
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m2	D	-55	-46	TCAAGCAATC	7.6
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m2	R	105	114	ATAAGCAAGT	7.5
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m2	R	383	392	TCAAGCAATT	7.7
hg38_ct_MyTrack_6202_14	site	oligos_6nt_mkv3_m2	D	-472	-463	ACAAGCAATT	7.9
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m2	R	166	175	ACAAGCAAAT	7.8
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m2	D	199	208	TCAAGCAAGT	7.5
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m2	D	263	272	TAAAGCAACT	7.7
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m2	D	79	88	ACAAGCAATG	7.9
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m2	R	-183	-174	AAAAGCAATA	7.9
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m2	D	-18	-9	TCAAGCAATC	7.6
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m2	R	270	279	TCAAGCGATT	7.6
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m2	D	275	284	TCAAGCAATT	7.7
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m2	R	300	309	ATAAGCAATC	7.6
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m2	D	-472	-463	GAAAGCGATA	7.5
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m2	D	-269	-260	TCAAGCGATC	7.5
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m2	R	83	92	ACAAGCAACA	7.8
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m2	R	-55	-46	TCAAGCAACT	7.5
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m2	D	72	81	TCAAGCAACT	7.5
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m2	D	313	322	TCAAGCAATT	7.7
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m2	R	-204	-195	TCAAGCGATT	7.6
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m2	D	-232	-223	TCAAGCAATT	7.7
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m2	D	203	212	ACAAGCAACC	7.6
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m2	D	177	186	ATAAGCAACT	7.6
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m2	R	348	357	TCAAGCAATC	7.6
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m2	D	-401	-392	TCAAGCAAGT	7.5
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv3_m2	10	4	0	-32.200	8.500	40.700	a:0.296 c:0.204 g:0.202 t:0.298 
; Number of sequences scanned	226
; Sum of sequence lengths	226000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv3_m2	82	0
;		TOTAL          	82	0
; Host name	rsat
; Job started	2026-02-26.200816
; Job done	2026-02-26.200816
; Seconds	0.24
;	user	0.24
;	system	0.02
;	cuser	0.09
;	csystem	0.01
