; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m8/peak-motifs_dyads_m8.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m8/peak-motifs_dyads_m8_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m8/peak-motifs_dyads_m8.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m8/peak-motifs_dyads_m8_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29599
;		c	0.20450
;		g	0.20176
;		t	0.29775
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
hg38_ct_MyTrack_6202_3	site	dyads_m8	D	253	262	TAAACAAATA	8.1
hg38_ct_MyTrack_6202_9	site	dyads_m8	D	-216	-207	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_11	site	dyads_m8	D	112	121	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_0	site	dyads_m8	D	-456	-447	AAAACAAAAC	8.1
hg38_ct_MyTrack_6202_1	site	dyads_m8	D	-193	-184	ACAACAAAAA	7.8
hg38_ct_MyTrack_6202_2	site	dyads_m8	R	316	325	GAAACAAATA	7.8
hg38_ct_MyTrack_6202_2	site	dyads_m8	R	467	476	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_2	site	dyads_m8	R	472	481	AAAACAAAAC	8.1
hg38_ct_MyTrack_6202_4	site	dyads_m8	R	48	57	ACAACAAAAT	7.5
hg38_ct_MyTrack_6202_5	site	dyads_m8	R	-169	-160	TAAACAAAAC	7.9
hg38_ct_MyTrack_6202_8	site	dyads_m8	D	264	273	TAAACAAACC	7.6
hg38_ct_MyTrack_6202_10	site	dyads_m8	D	-488	-479	AAAACAAATA	8.3
hg38_ct_MyTrack_6202_10	site	dyads_m8	D	-112	-103	AAAACAAACA	8.1
hg38_ct_MyTrack_6202_12	site	dyads_m8	D	118	127	ACAACAAAGA	7.5
hg38_ct_MyTrack_6202_14	site	dyads_m8	D	-365	-356	CAAACAAATA	7.6
hg38_ct_MyTrack_6202_15	site	dyads_m8	R	-495	-486	ACAACAAACA	7.8
hg38_ct_MyTrack_6202_16	site	dyads_m8	D	277	286	TAAACAAATA	8.1
hg38_ct_MyTrack_6202_17	site	dyads_m8	R	-163	-154	AAAACAAAAC	8.1
hg38_ct_MyTrack_6202_17	site	dyads_m8	R	-157	-148	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_17	site	dyads_m8	R	-151	-142	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_17	site	dyads_m8	R	47	56	TAAACAAAAT	7.7
hg38_ct_MyTrack_6202_2	site	dyads_m8	D	288	297	AAAACAAAGA	7.9
hg38_ct_MyTrack_6202_3	site	dyads_m8	R	233	242	ACAACAAATA	7.9
hg38_ct_MyTrack_6202_6	site	dyads_m8	D	-406	-397	AAAACAAAAT	7.9
hg38_ct_MyTrack_6202_7	site	dyads_m8	D	-279	-270	GAAACAAAAC	7.7
hg38_ct_MyTrack_6202_8	site	dyads_m8	R	139	148	TAAACAAATA	8.1
hg38_ct_MyTrack_6202_9	site	dyads_m8	D	-427	-418	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_9	site	dyads_m8	D	-421	-412	AAAACAAAGC	7.5
hg38_ct_MyTrack_6202_9	site	dyads_m8	D	-411	-402	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_0	site	dyads_m8	D	-128	-119	ACAACAAATA	7.9
hg38_ct_MyTrack_6202_3	site	dyads_m8	R	-222	-213	AAAACAAAGT	7.5
hg38_ct_MyTrack_6202_4	site	dyads_m8	D	6	15	AAAACAAAAT	7.9
hg38_ct_MyTrack_6202_5	site	dyads_m8	R	140	149	AAAACAAACA	8.1
hg38_ct_MyTrack_6202_5	site	dyads_m8	R	376	385	AAAACAAAAC	8.1
hg38_ct_MyTrack_6202_3	site	dyads_m8	R	208	217	AAAACAAAAC	8.1
hg38_ct_MyTrack_6202_4	site	dyads_m8	D	-187	-178	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_4	site	dyads_m8	D	-181	-172	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_5	site	dyads_m8	D	378	387	TAAACAAAGA	7.7
hg38_ct_MyTrack_6202_6	site	dyads_m8	R	145	154	ACAACAAAAA	7.8
hg38_ct_MyTrack_6202_6	site	dyads_m8	R	162	171	AAAACAAACA	8.1
hg38_ct_MyTrack_6202_8	site	dyads_m8	R	15	24	ACAACAAAAA	7.8
hg38_ct_MyTrack_6202_8	site	dyads_m8	R	23	32	AAAACAAAAC	8.1
hg38_ct_MyTrack_6202_8	site	dyads_m8	R	477	486	TAAACAAATA	8.1
hg38_ct_MyTrack_6202_10	site	dyads_m8	D	412	421	AGAACAAAAA	7.6
hg38_ct_MyTrack_6202_10	site	dyads_m8	R	428	437	AAAACAAAAC	8.1
hg38_ct_MyTrack_6202_11	site	dyads_m8	D	-183	-174	ATAACAAAAA	7.8
hg38_ct_MyTrack_6202_12	site	dyads_m8	D	-131	-122	TAAACAAACA	7.9
hg38_ct_MyTrack_6202_13	site	dyads_m8	D	-134	-125	GAAACAAACA	7.7
hg38_ct_MyTrack_6202_14	site	dyads_m8	R	-334	-325	ACAACAAATA	7.9
hg38_ct_MyTrack_6202_17	site	dyads_m8	D	321	330	AAAACAAAAC	8.1
hg38_ct_MyTrack_6202_18	site	dyads_m8	D	-315	-306	ACAACAAAAA	7.8
hg38_ct_MyTrack_6202_20	site	dyads_m8	R	-373	-364	AAAACAAAGA	7.9
hg38_ct_MyTrack_6202_20	site	dyads_m8	D	135	144	ATAACAAATA	7.9
hg38_ct_MyTrack_6202_20	site	dyads_m8	R	262	271	TAAACAAAAC	7.9
hg38_ct_MyTrack_6202_21	site	dyads_m8	R	-37	-28	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_21	site	dyads_m8	D	129	138	AAAACAAATC	7.6
hg38_ct_MyTrack_6202_22	site	dyads_m8	R	345	354	AAAACAAAAT	7.9
hg38_ct_MyTrack_6202_22	site	dyads_m8	R	367	376	GAAACAAAAC	7.7
hg38_ct_MyTrack_6202_24	site	dyads_m8	R	-456	-447	ATAACAAAAA	7.8
hg38_ct_MyTrack_6202_24	site	dyads_m8	D	-42	-33	GAAACAAAAC	7.7
hg38_ct_MyTrack_6202_25	site	dyads_m8	R	-403	-394	TAAACAAAAT	7.7
hg38_ct_MyTrack_6202_26	site	dyads_m8	R	-140	-131	AAAACAAAGC	7.5
hg38_ct_MyTrack_6202_27	site	dyads_m8	R	-209	-200	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_27	site	dyads_m8	R	-201	-192	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_27	site	dyads_m8	R	-194	-185	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_28	site	dyads_m8	D	-129	-120	GAAACAAATA	7.8
hg38_ct_MyTrack_6202_28	site	dyads_m8	R	436	445	AAAACAAACA	8.1
hg38_ct_MyTrack_6202_0	site	dyads_m8	D	124	133	AAAACAAAGT	7.5
hg38_ct_MyTrack_6202_6	site	dyads_m8	R	-259	-250	AAAACAAAGC	7.5
hg38_ct_MyTrack_6202_6	site	dyads_m8	D	344	353	ATAACAAAAA	7.8
hg38_ct_MyTrack_6202_6	site	dyads_m8	D	376	385	ACAACAAACA	7.8
hg38_ct_MyTrack_6202_8	site	dyads_m8	D	-203	-194	AAAACAAAAC	8.1
hg38_ct_MyTrack_6202_8	site	dyads_m8	D	-198	-189	AAAACAAAAT	7.9
hg38_ct_MyTrack_6202_8	site	dyads_m8	D	338	347	AAAACAAACA	8.1
hg38_ct_MyTrack_6202_9	site	dyads_m8	R	-77	-68	AGAACAAACA	7.6
hg38_ct_MyTrack_6202_9	site	dyads_m8	R	141	150	ACAACAAAAC	7.7
hg38_ct_MyTrack_6202_9	site	dyads_m8	R	192	201	ATAACAAACA	7.8
hg38_ct_MyTrack_6202_0	site	dyads_m8	R	-4	5	ACAACAAAAA	7.8
hg38_ct_MyTrack_6202_7	site	dyads_m8	R	-382	-373	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_7	site	dyads_m8	D	-2	7	AAAACAAATC	7.6
hg38_ct_MyTrack_6202_7	site	dyads_m8	D	83	92	AAAACAAAAT	7.9
hg38_ct_MyTrack_6202_7	site	dyads_m8	D	319	328	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_7	site	dyads_m8	D	333	342	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_7	site	dyads_m8	D	340	349	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_8	site	dyads_m8	R	-8	1	AAAACAAACA	8.1
hg38_ct_MyTrack_6202_11	site	dyads_m8	R	-105	-96	GAAACAAAAC	7.7
hg38_ct_MyTrack_6202_11	site	dyads_m8	R	-4	5	TAAACAAACC	7.6
hg38_ct_MyTrack_6202_1	site	dyads_m8	D	177	186	ATAACAAATA	7.9
hg38_ct_MyTrack_6202_0	site	dyads_m8	R	-480	-471	AAAACAAACC	7.7
hg38_ct_MyTrack_6202_0	site	dyads_m8	D	-447	-438	AAAACAAATA	8.3
hg38_ct_MyTrack_6202_2	site	dyads_m8	D	-327	-318	ATAACAAAAA	7.8
hg38_ct_MyTrack_6202_5	site	dyads_m8	D	-255	-246	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_5	site	dyads_m8	D	-249	-240	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_5	site	dyads_m8	D	-236	-227	AAAACAAAAC	8.1
hg38_ct_MyTrack_6202_5	site	dyads_m8	D	357	366	TAAACAAAAG	7.6
hg38_ct_MyTrack_6202_6	site	dyads_m8	R	232	241	ACAACAAAAT	7.5
hg38_ct_MyTrack_6202_0	site	dyads_m8	R	-251	-242	GAAACAAACA	7.7
hg38_ct_MyTrack_6202_0	site	dyads_m8	D	-240	-231	AAAACAAAAT	7.9
hg38_ct_MyTrack_6202_2	site	dyads_m8	D	474	483	ACAACAAAAT	7.5
hg38_ct_MyTrack_6202_3	site	dyads_m8	D	-357	-348	TCAACAAACG	8.3
hg38_ct_MyTrack_6202_3	site	dyads_m8	D	-97	-88	AAAACAAAGA	7.9
hg38_ct_MyTrack_6202_3	site	dyads_m8	D	244	253	AAAACAAAAC	8.1
hg38_ct_MyTrack_6202_5	site	dyads_m8	R	-374	-365	AGAACAAAAA	7.6
hg38_ct_MyTrack_6202_1	site	dyads_m8	R	-132	-123	GAAACAAACA	7.7
hg38_ct_MyTrack_6202_2	site	dyads_m8	D	297	306	ACAACAAAAA	7.8
hg38_ct_MyTrack_6202_4	site	dyads_m8	R	369	378	GAAACAAAAC	7.7
hg38_ct_MyTrack_6202_5	site	dyads_m8	R	-463	-454	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_5	site	dyads_m8	R	-259	-250	AAAACAAAAC	8.1
hg38_ct_MyTrack_6202_5	site	dyads_m8	R	116	125	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_5	site	dyads_m8	R	123	132	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_2	site	dyads_m8	D	-99	-90	AAAACAAAGA	7.9
hg38_ct_MyTrack_6202_9	site	dyads_m8	D	-170	-161	AAAACAAACT	7.6
hg38_ct_MyTrack_6202_10	site	dyads_m8	D	-444	-435	GAAACAAACA	7.7
hg38_ct_MyTrack_6202_10	site	dyads_m8	D	-350	-341	AAAACAAAAC	8.1
hg38_ct_MyTrack_6202_11	site	dyads_m8	D	-491	-482	AAAACAAACA	8.1
hg38_ct_MyTrack_6202_11	site	dyads_m8	D	-474	-465	AAAACAAAAC	8.1
hg38_ct_MyTrack_6202_13	site	dyads_m8	R	-127	-118	TGAACAAACG	8.3
hg38_ct_MyTrack_6202_0	site	dyads_m8	R	81	90	ACAACAAAAA	7.8
hg38_ct_MyTrack_6202_1	site	dyads_m8	R	398	407	AGAACAAAAC	7.6
hg38_ct_MyTrack_6202_3	site	dyads_m8	D	155	164	ATAACAAAAC	7.7
hg38_ct_MyTrack_6202_7	site	dyads_m8	D	91	100	ATAACAAATA	7.9
hg38_ct_MyTrack_6202_1	site	dyads_m8	D	-390	-381	AAAACAAACC	7.7
hg38_ct_MyTrack_6202_2	site	dyads_m8	R	-134	-125	ATAACAAAAT	7.5
hg38_ct_MyTrack_6202_3	site	dyads_m8	R	-422	-413	AAAACAAACA	8.1
hg38_ct_MyTrack_6202_3	site	dyads_m8	R	195	204	TCAACAAACG	8.3
hg38_ct_MyTrack_6202_1	site	dyads_m8	R	-253	-244	TAAACAAATA	8.1
hg38_ct_MyTrack_6202_4	site	dyads_m8	D	365	374	ACAACAAAAA	7.8
hg38_ct_MyTrack_6202_4	site	dyads_m8	D	289	298	TAAACAAAAG	7.6
hg38_ct_MyTrack_6202_7	site	dyads_m8	R	-487	-478	ACAACAAAAA	7.8
hg38_ct_MyTrack_6202_0	site	dyads_m8	D	-259	-250	AAAACAAAAC	8.1
hg38_ct_MyTrack_6202_1	site	dyads_m8	D	-409	-400	AAAACAAAAT	7.9
hg38_ct_MyTrack_6202_1	site	dyads_m8	D	-251	-242	AAAACAAACA	8.1
hg38_ct_MyTrack_6202_2	site	dyads_m8	R	-161	-152	AAAACAAACC	7.7
hg38_ct_MyTrack_6202_2	site	dyads_m8	R	56	65	AAAACAAAAT	7.9
hg38_ct_MyTrack_6202_5	site	dyads_m8	R	117	126	AAAACAAAGA	7.9
hg38_ct_MyTrack_6202_6	site	dyads_m8	R	-303	-294	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_6	site	dyads_m8	R	-294	-285	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_6	site	dyads_m8	D	137	146	ATAACAAACA	7.8
hg38_ct_MyTrack_6202_7	site	dyads_m8	D	-107	-98	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_7	site	dyads_m8	D	82	91	ATAACAAACA	7.8
hg38_ct_MyTrack_6202_7	site	dyads_m8	R	287	296	GAAACAAACG	9.0
hg38_ct_MyTrack_6202_4	site	dyads_m8	D	355	364	ACAACAAAGA	7.5
hg38_ct_MyTrack_6202_4	site	dyads_m8	D	386	395	AAAACAAAAT	7.9
hg38_ct_MyTrack_6202_0	site	dyads_m8	D	183	192	AAAACAAAAC	8.1
hg38_ct_MyTrack_6202_0	site	dyads_m8	D	188	197	AAAACAAAAC	8.1
hg38_ct_MyTrack_6202_0	site	dyads_m8	D	193	202	AAAACAAACA	8.1
hg38_ct_MyTrack_6202_2	site	dyads_m8	D	-322	-313	TAAACAAAGA	7.7
hg38_ct_MyTrack_6202_2	site	dyads_m8	R	42	51	ATAACAAAGA	7.5
hg38_ct_MyTrack_6202_0	site	dyads_m8	D	-417	-408	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_3	site	dyads_m8	R	-198	-189	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_3	site	dyads_m8	D	267	276	AAAACAAAAA	8.1
hg38_ct_MyTrack_6202_0	site	dyads_m8	R	349	358	AAAACAAAAA	8.1
;
; Matrices
;	matrix	name    	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_m8	10	4	0	-36.300	9.000	45.300	a:0.296 c:0.204 g:0.202 t:0.298 
; Number of sequences scanned	226
; Sum of sequence lengths	226000
; N residues           	0
; Matches per matrix
;	matrix	name    	matches	scored
;	1	dyads_m8       	152	0
;		TOTAL          	152	0
; Host name	rsat
; Job started	2026-02-26.200839
; Job done	2026-02-26.200839
; Seconds	0.18
;	user	0.18
;	system	0.02
;	cuser	0.11
;	csystem	0.02
