AC  assembly_1
XX
ID  gaaataaa
XX
DE  nngAAATAAAnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00      0.00      0.64      0.00
4         5.03      0.00      0.00      0.00
5         5.03      0.00      0.00      0.00
6         5.03      0.00      0.00      0.00
7         0.00      0.00      0.00      5.03
8         5.03      0.00      0.00      0.00
9         5.03      0.00      0.00      0.00
10        2.16      0.00      0.00      0.00
11        0.00      0.00      0.00      0.00
12        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 1
CC  id: assembly_1
CC  name: gaaataaa
CC  asmb.seed: aaataa
CC  matrix.nb: 1
CC  sites: 3
CC  consensus.strict: --gAAATAAA--
CC  consensus.strict.rc: --TTTATTTC--
CC  consensus.IUPAC: nngAAATAAAnn
CC  consensus.IUPAC.rc: NNTTTATTTCNN
CC  consensus.regexp: [acgt][acgt]gAAATAAA[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TTTATTTC[ACGT][ACGT]
XX
//
AC  assembly_2
XX
ID  aagcaa
XX
DE  nnAAGCAAnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         3.47      0.00      0.00      0.00
4         3.47      0.00      0.00      0.00
5         0.00      0.00      3.47      0.00
6         0.00      3.47      0.00      0.00
7         3.47      0.00      0.00      0.00
8         3.47      0.00      0.00      0.00
9         0.00      0.00      0.00      0.00
10        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 2
CC  id: assembly_2
CC  name: aagcaa
CC  asmb.seed: aagcaa
CC  matrix.nb: 2
CC  sites: 1
CC  consensus.strict: --AAGCAA--
CC  consensus.strict.rc: --TTGCTT--
CC  consensus.IUPAC: nnAAGCAAnn
CC  consensus.IUPAC.rc: NNTTGCTTNN
CC  consensus.regexp: [acgt][acgt]AAGCAA[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TTGCTT[ACGT][ACGT]
XX
//
AC  assembly_3
XX
ID  aaacaaa
XX
DE  nnaAACAAAnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.11      0.00      0.00      0.00
4         3.39      0.00      0.00      0.00
5         3.39      0.00      0.00      0.00
6         0.00      3.39      0.00      0.00
7         3.39      0.00      0.00      0.00
8         3.39      0.00      0.00      0.00
9         3.39      0.00      0.00      0.00
10        0.00      0.00      0.00      0.00
11        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 3
CC  id: assembly_3
CC  name: aaacaaa
CC  asmb.seed: aacaaa
CC  matrix.nb: 3
CC  sites: 2
CC  consensus.strict: --aAACAAA--
CC  consensus.strict.rc: --TTTGTTT--
CC  consensus.IUPAC: nnaAACAAAnn
CC  consensus.IUPAC.rc: NNTTTGTTTNN
CC  consensus.regexp: [acgt][acgt]aAACAAA[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TTTGTTT[ACGT][ACGT]
XX
//
AC  assembly_4
XX
ID  acccaggc
XX
DE  nnacCCAGGCnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.68      0.00      0.00      0.00
4         0.00      0.68      0.00      0.00
5         0.00      2.43      0.00      0.00
6         0.00      2.43      0.00      0.00
7         2.43      0.00      0.00      0.00
8         0.00      0.00      2.43      0.00
9         0.00      0.00      2.43      0.00
10        0.00      2.43      0.00      0.00
11        0.00      0.00      0.00      0.00
12        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 4
CC  id: assembly_4
CC  name: acccaggc
CC  asmb.seed: ccaggc
CC  matrix.nb: 4
CC  sites: 3
CC  consensus.strict: --acCCAGGC--
CC  consensus.strict.rc: --GCCTGGGT--
CC  consensus.IUPAC: nnacCCAGGCnn
CC  consensus.IUPAC.rc: NNGCCTGGGTNN
CC  consensus.regexp: [acgt][acgt]acCCAGGC[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]GCCTGGGT[ACGT][ACGT]
XX
//
AC  assembly_5
XX
ID  aatgtat
XX
DE  nnAATGTAtnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         1.93      0.00      0.00      0.00
4         1.93      0.00      0.00      0.00
5         0.00      0.00      0.00      1.93
6         0.00      0.00      1.93      0.00
7         0.00      0.00      0.00      1.93
8         1.93      0.00      0.00      0.00
9         0.00      0.00      0.00      0.69
10        0.00      0.00      0.00      0.00
11        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 5
CC  id: assembly_5
CC  name: aatgtat
CC  asmb.seed: aatgta
CC  matrix.nb: 5
CC  sites: 2
CC  consensus.strict: --AATGTAt--
CC  consensus.strict.rc: --ATACATT--
CC  consensus.IUPAC: nnAATGTAtnn
CC  consensus.IUPAC.rc: NNATACATTNN
CC  consensus.regexp: [acgt][acgt]AATGTAt[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]ATACATT[ACGT][ACGT]
XX
//
AC  assembly_6
XX
ID  cctccc
XX
DE  nnCCTCCCnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00      1.77      0.00      0.00
4         0.00      1.77      0.00      0.00
5         0.00      0.00      0.00      1.77
6         0.00      1.77      0.00      0.00
7         0.00      1.77      0.00      0.00
8         0.00      1.77      0.00      0.00
9         0.00      0.00      0.00      0.00
10        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 6
CC  id: assembly_6
CC  name: cctccc
CC  asmb.seed: cctccc
CC  matrix.nb: 6
CC  sites: 1
CC  consensus.strict: --CCTCCC--
CC  consensus.strict.rc: --GGGAGG--
CC  consensus.IUPAC: nnCCTCCCnn
CC  consensus.IUPAC.rc: NNGGGAGGNN
CC  consensus.regexp: [acgt][acgt]CCTCCC[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]GGGAGG[ACGT][ACGT]
XX
//
AC  assembly_7
XX
ID  cactgc
XX
DE  nnCACTGCnn
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.00      1.45      0.00      0.00
4         1.45      0.00      0.00      0.00
5         0.00      1.45      0.00      0.00
6         0.00      0.00      0.00      1.45
7         0.00      0.00      1.45      0.00
8         0.00      1.45      0.00      0.00
9         0.00      0.00      0.00      0.00
10        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 7
CC  id: assembly_7
CC  name: cactgc
CC  asmb.seed: cactgc
CC  matrix.nb: 7
CC  sites: 1
CC  consensus.strict: --CACTGC--
CC  consensus.strict.rc: --GCAGTG--
CC  consensus.IUPAC: nnCACTGCnn
CC  consensus.IUPAC.rc: NNGCAGTGNN
CC  consensus.regexp: [acgt][acgt]CACTGC[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]GCAGTG[ACGT][ACGT]
XX
//
AC  assembly_8
XX
ID  attcaa
XX
DE  nnattcaann
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         1.29      0.00      0.00      0.00
4         0.00      0.00      0.00      1.29
5         0.00      0.00      0.00      1.29
6         0.00      1.29      0.00      0.00
7         1.29      0.00      0.00      0.00
8         1.29      0.00      0.00      0.00
9         0.00      0.00      0.00      0.00
10        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 8
CC  id: assembly_8
CC  name: attcaa
CC  asmb.seed: attcaa
CC  matrix.nb: 8
CC  sites: 1
CC  consensus.strict: --attcaa--
CC  consensus.strict.rc: --TTGAAT--
CC  consensus.IUPAC: nnattcaann
CC  consensus.IUPAC.rc: NNTTGAATNN
CC  consensus.regexp: [acgt][acgt]attcaa[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TTGAAT[ACGT][ACGT]
XX
//
AC  assembly_9
XX
ID  atacata
XX
DE  nnatacatann
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.69      0.00      0.00      0.00
4         0.00      0.00      0.00      0.89
5         0.89      0.00      0.00      0.00
6         0.00      0.89      0.00      0.00
7         0.89      0.00      0.00      0.00
8         0.00      0.00      0.00      0.89
9         0.89      0.00      0.00      0.00
10        0.00      0.00      0.00      0.00
11        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 9
CC  id: assembly_9
CC  name: atacata
CC  asmb.seed: tacata
CC  matrix.nb: 9
CC  sites: 2
CC  consensus.strict: --atacata--
CC  consensus.strict.rc: --TATGTAT--
CC  consensus.IUPAC: nnatacatann
CC  consensus.IUPAC.rc: NNTATGTATNN
CC  consensus.regexp: [acgt][acgt]atacata[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TATGTAT[ACGT][ACGT]
XX
//
AC  assembly_10
XX
ID  aaagaa
XX
DE  nnaaagaann
P0           a         c         g         t
1         0.00      0.00      0.00      0.00
2         0.00      0.00      0.00      0.00
3         0.46      0.00      0.00      0.00
4         0.46      0.00      0.00      0.00
5         0.46      0.00      0.00      0.00
6         0.00      0.00      0.46      0.00
7         0.46      0.00      0.00      0.00
8         0.46      0.00      0.00      0.00
9         0.00      0.00      0.00      0.00
10        0.00      0.00      0.00      0.00
XX
CC  program: pattern-assembly
CC  matrix.nb: 10
CC  id: assembly_10
CC  name: aaagaa
CC  asmb.seed: aaagaa
CC  matrix.nb: 10
CC  sites: 1
CC  consensus.strict: --aaagaa--
CC  consensus.strict.rc: --TTCTTT--
CC  consensus.IUPAC: nnaaagaann
CC  consensus.IUPAC.rc: NNTTCTTTNN
CC  consensus.regexp: [acgt][acgt]aaagaa[acgt][acgt]
CC  consensus.regexp.rc: [ACGT][ACGT]TTCTTT[ACGT][ACGT]
XX
//
