; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m7/peak-motifs_dyads_m7.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m7/peak-motifs_dyads_m7_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m7/peak-motifs_dyads_m7.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m7/peak-motifs_dyads_m7_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29599
;		c	0.20450
;		g	0.20176
;		t	0.29775
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
hg38_ct_MyTrack_6202_2	site	dyads_m7	D	408	417	ATAGAGAAAA	7.8
hg38_ct_MyTrack_6202_3	site	dyads_m7	D	118	127	GTAGAGACGG	7.5
hg38_ct_MyTrack_6202_5	site	dyads_m7	R	-213	-204	AGAGAGAAAA	7.8
hg38_ct_MyTrack_6202_9	site	dyads_m7	D	20	29	GTAGAGACGG	7.5
hg38_ct_MyTrack_6202_12	site	dyads_m7	D	-299	-290	GGAGAGAAAT	7.9
hg38_ct_MyTrack_6202_5	site	dyads_m7	R	364	373	ATAGAGAAGT	7.8
hg38_ct_MyTrack_6202_7	site	dyads_m7	D	434	443	ATAGAGAAAG	8.0
hg38_ct_MyTrack_6202_9	site	dyads_m7	R	-428	-419	GCAGAGAAGG	7.8
hg38_ct_MyTrack_6202_9	site	dyads_m7	R	248	257	AAAGAGAAGG	7.5
hg38_ct_MyTrack_6202_11	site	dyads_m7	D	-291	-282	GGAGAGAAGG	8.0
hg38_ct_MyTrack_6202_17	site	dyads_m7	R	-77	-68	ACAGAGAAGA	7.8
hg38_ct_MyTrack_6202_0	site	dyads_m7	D	-68	-59	GGAGAGAAAT	7.9
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	-414	-405	GGAGAGAAGG	8.0
hg38_ct_MyTrack_6202_1	site	dyads_m7	D	399	408	GGAGAGAAGG	8.0
hg38_ct_MyTrack_6202_2	site	dyads_m7	R	-257	-248	AGAGAGAAGA	7.9
hg38_ct_MyTrack_6202_2	site	dyads_m7	D	127	136	GTAGAGAAAG	8.1
hg38_ct_MyTrack_6202_2	site	dyads_m7	D	133	142	AAAGAGAAAG	7.6
hg38_ct_MyTrack_6202_4	site	dyads_m7	R	-397	-388	ATAGAGAAGT	7.8
hg38_ct_MyTrack_6202_4	site	dyads_m7	R	114	123	ATAGAGAAGT	7.8
hg38_ct_MyTrack_6202_5	site	dyads_m7	R	146	155	AGAGAGAATA	7.9
hg38_ct_MyTrack_6202_5	site	dyads_m7	D	232	241	GTAGAGAAGG	8.0
hg38_ct_MyTrack_6202_6	site	dyads_m7	D	-494	-485	GGAGAGAAGA	7.9
hg38_ct_MyTrack_6202_6	site	dyads_m7	D	-487	-478	AGAGAGAAGG	8.0
hg38_ct_MyTrack_6202_8	site	dyads_m7	R	-362	-353	GGAGAGAAAA	7.8
hg38_ct_MyTrack_6202_10	site	dyads_m7	D	-400	-391	ATAGAGAAGG	8.0
hg38_ct_MyTrack_6202_10	site	dyads_m7	R	181	190	AGAGAGAATA	7.9
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	-44	-35	ACAGAGAAAG	8.0
hg38_ct_MyTrack_6202_3	site	dyads_m7	D	169	178	GGAGAGAAAA	7.8
hg38_ct_MyTrack_6202_3	site	dyads_m7	D	377	386	AAAGAGAAAG	7.6
hg38_ct_MyTrack_6202_4	site	dyads_m7	D	-85	-76	AGAGAGAAAG	8.1
hg38_ct_MyTrack_6202_5	site	dyads_m7	D	99	108	AAAGAGAAAG	7.6
hg38_ct_MyTrack_6202_7	site	dyads_m7	D	-209	-200	GGAGAGAAAC	7.9
hg38_ct_MyTrack_6202_7	site	dyads_m7	D	289	298	AGAGAGAAAT	7.9
hg38_ct_MyTrack_6202_0	site	dyads_m7	D	-388	-379	GGAGAGAAAA	7.8
hg38_ct_MyTrack_6202_0	site	dyads_m7	R	88	97	GGAGAGAAGG	8.0
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	-442	-433	ATAGAGAAGT	7.8
hg38_ct_MyTrack_6202_1	site	dyads_m7	D	460	469	GGAGAGAAGA	7.9
hg38_ct_MyTrack_6202_2	site	dyads_m7	D	135	144	GCAGAGAAAC	7.6
hg38_ct_MyTrack_6202_3	site	dyads_m7	D	-116	-107	ACAGAGAAAC	7.8
hg38_ct_MyTrack_6202_4	site	dyads_m7	D	418	427	AGAGAGAAAA	7.8
hg38_ct_MyTrack_6202_6	site	dyads_m7	R	293	302	GTAGAGACGG	7.5
hg38_ct_MyTrack_6202_11	site	dyads_m7	D	281	290	CAAGAGAACG	8.5
hg38_ct_MyTrack_6202_11	site	dyads_m7	D	355	364	ATAGAGAAGT	7.8
hg38_ct_MyTrack_6202_12	site	dyads_m7	D	-115	-106	ACAGAGAAAA	7.8
hg38_ct_MyTrack_6202_13	site	dyads_m7	D	-139	-130	GAAGAGAAAC	7.5
hg38_ct_MyTrack_6202_13	site	dyads_m7	R	276	285	ACAGAGAAGC	7.6
hg38_ct_MyTrack_6202_14	site	dyads_m7	R	-124	-115	GTAGAGACGG	7.5
hg38_ct_MyTrack_6202_16	site	dyads_m7	R	58	67	AAAGAGAAAG	7.6
hg38_ct_MyTrack_6202_17	site	dyads_m7	D	177	186	AGAGAGAAAA	7.8
hg38_ct_MyTrack_6202_17	site	dyads_m7	D	190	199	AAAGAGAAAG	7.6
hg38_ct_MyTrack_6202_17	site	dyads_m7	D	196	205	AAAGAGAAAG	7.6
hg38_ct_MyTrack_6202_20	site	dyads_m7	R	-229	-220	GCAGAGAAGA	7.6
hg38_ct_MyTrack_6202_20	site	dyads_m7	R	-52	-43	GCAGAGAAAG	7.8
hg38_ct_MyTrack_6202_20	site	dyads_m7	R	-34	-25	GTAGAGAAAA	7.8
hg38_ct_MyTrack_6202_21	site	dyads_m7	D	-443	-434	ATAGAGAAGC	7.6
hg38_ct_MyTrack_6202_21	site	dyads_m7	R	-208	-199	ACAGAGAAAA	7.8
hg38_ct_MyTrack_6202_22	site	dyads_m7	R	77	86	AGAGAGAAAA	7.8
hg38_ct_MyTrack_6202_23	site	dyads_m7	R	137	146	GGAGAGAAAG	8.1
hg38_ct_MyTrack_6202_2	site	dyads_m7	R	149	158	ACAGAGAAAC	7.8
hg38_ct_MyTrack_6202_3	site	dyads_m7	D	-92	-83	AGAGAGAAAA	7.8
hg38_ct_MyTrack_6202_4	site	dyads_m7	R	-321	-312	AGAGAGAATG	7.8
hg38_ct_MyTrack_6202_6	site	dyads_m7	R	-471	-462	GTAGAGACGG	7.5
hg38_ct_MyTrack_6202_7	site	dyads_m7	R	25	34	GTAGAGAAAT	7.9
hg38_ct_MyTrack_6202_7	site	dyads_m7	D	328	337	GTAGAGACGG	7.5
hg38_ct_MyTrack_6202_8	site	dyads_m7	R	163	172	GTAGAGACGG	7.5
hg38_ct_MyTrack_6202_9	site	dyads_m7	R	-468	-459	ACAGAGAATG	7.7
hg38_ct_MyTrack_6202_10	site	dyads_m7	D	-367	-358	GCAGAGAAAG	7.8
hg38_ct_MyTrack_6202_11	site	dyads_m7	R	121	130	GTAGAGACGG	7.5
hg38_ct_MyTrack_6202_12	site	dyads_m7	R	-135	-126	AGAGAGAAGA	7.9
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	-331	-322	GAAGAGAAAC	7.5
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	116	125	ACAGAGAAAT	7.8
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	126	135	ATAGAGAAGA	7.8
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	292	301	ACAGAGAAAT	7.8
hg38_ct_MyTrack_6202_3	site	dyads_m7	R	99	108	AGAGAGAAAT	7.9
hg38_ct_MyTrack_6202_14	site	dyads_m7	D	142	151	ACAGAGAAGA	7.8
hg38_ct_MyTrack_6202_14	site	dyads_m7	D	235	244	AGAGAGAAAC	7.9
hg38_ct_MyTrack_6202_2	site	dyads_m7	D	24	33	ACAGAGAATG	7.7
hg38_ct_MyTrack_6202_0	site	dyads_m7	R	-180	-171	GTAGAGACGG	7.5
hg38_ct_MyTrack_6202_2	site	dyads_m7	D	-200	-191	ACAGAGAAAT	7.8
hg38_ct_MyTrack_6202_6	site	dyads_m7	D	-280	-271	GCAGAGAAAG	7.8
hg38_ct_MyTrack_6202_0	site	dyads_m7	R	-32	-23	GAAGAGAAGA	7.5
hg38_ct_MyTrack_6202_5	site	dyads_m7	D	235	244	CGAGAGAAAT	9.2
hg38_ct_MyTrack_6202_0	site	dyads_m7	D	303	312	ATAGAGAAAG	8.0
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	-413	-404	AGAGAGAAAG	8.1
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	-101	-92	GAAGAGAAGT	7.5
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	43	52	GTAGAGAAGA	7.9
hg38_ct_MyTrack_6202_2	site	dyads_m7	D	-291	-282	AGAGAGAAGC	7.6
hg38_ct_MyTrack_6202_5	site	dyads_m7	R	-386	-377	AGAGAGAAGA	7.9
hg38_ct_MyTrack_6202_5	site	dyads_m7	R	-2	7	GGAGAGAAAA	7.8
hg38_ct_MyTrack_6202_5	site	dyads_m7	D	484	493	GTAGAGACGG	7.5
hg38_ct_MyTrack_6202_8	site	dyads_m7	R	342	351	GGAGAGAAAT	7.9
hg38_ct_MyTrack_6202_0	site	dyads_m7	R	304	313	AGAGAGAAAG	8.1
hg38_ct_MyTrack_6202_2	site	dyads_m7	D	478	487	ATAGAGAAAA	7.8
hg38_ct_MyTrack_6202_4	site	dyads_m7	R	484	493	AGAGAGAAAG	8.1
hg38_ct_MyTrack_6202_6	site	dyads_m7	R	-406	-397	AGAGAGAAAA	7.8
hg38_ct_MyTrack_6202_6	site	dyads_m7	R	-303	-294	ACAGAGAATG	7.7
hg38_ct_MyTrack_6202_6	site	dyads_m7	R	50	59	ATAGAGAAGA	7.8
hg38_ct_MyTrack_6202_7	site	dyads_m7	R	-310	-301	AGAGAGAAAT	7.9
hg38_ct_MyTrack_6202_7	site	dyads_m7	R	-287	-278	AGAGAGAAGA	7.9
hg38_ct_MyTrack_6202_7	site	dyads_m7	D	352	361	GGAGAGAAAG	8.1
hg38_ct_MyTrack_6202_8	site	dyads_m7	D	-76	-67	AGAGAGAAAA	7.8
hg38_ct_MyTrack_6202_8	site	dyads_m7	R	181	190	GCAGAGAATA	7.6
hg38_ct_MyTrack_6202_8	site	dyads_m7	R	355	364	ACAGAGAAAG	8.0
hg38_ct_MyTrack_6202_10	site	dyads_m7	D	-449	-440	AGAGAGAAAC	7.9
hg38_ct_MyTrack_6202_10	site	dyads_m7	R	-213	-204	ATAGAGAAAT	7.8
hg38_ct_MyTrack_6202_12	site	dyads_m7	D	-225	-216	GAAGAGAAAG	7.7
hg38_ct_MyTrack_6202_12	site	dyads_m7	D	-45	-36	GCAGAGAAAA	7.6
hg38_ct_MyTrack_6202_14	site	dyads_m7	D	-358	-349	ACAGAGAAAT	7.8
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	-229	-220	AGAGAGAATG	7.8
hg38_ct_MyTrack_6202_7	site	dyads_m7	D	-444	-435	AGAGAGAAAC	7.9
hg38_ct_MyTrack_6202_0	site	dyads_m7	R	-390	-381	AGAGAGAAAG	8.1
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	-18	-9	ACAGAGAAAG	8.0
hg38_ct_MyTrack_6202_0	site	dyads_m7	D	181	190	ACAGAGAAGG	8.0
hg38_ct_MyTrack_6202_1	site	dyads_m7	D	478	487	TGAGAGAAAG	7.6
hg38_ct_MyTrack_6202_3	site	dyads_m7	R	-4	5	ATAGAGAAAA	7.8
hg38_ct_MyTrack_6202_3	site	dyads_m7	R	215	224	ATAGAGAAAA	7.8
hg38_ct_MyTrack_6202_5	site	dyads_m7	R	345	354	GCAGAGAAGG	7.8
hg38_ct_MyTrack_6202_6	site	dyads_m7	D	-494	-485	AGAGAGAAGG	8.0
hg38_ct_MyTrack_6202_7	site	dyads_m7	R	-420	-411	GTAGAGACGG	7.5
hg38_ct_MyTrack_6202_10	site	dyads_m7	R	-130	-121	GTAGAGACGG	7.5
hg38_ct_MyTrack_6202_0	site	dyads_m7	D	106	115	GGAGAGAAGA	7.9
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	49	58	AGAGAGAAGT	7.9
hg38_ct_MyTrack_6202_0	site	dyads_m7	D	-482	-473	GCAGAGAAAC	7.6
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	186	195	GTAGAGACGG	7.5
hg38_ct_MyTrack_6202_4	site	dyads_m7	D	-331	-322	ATAGAGAAAT	7.8
hg38_ct_MyTrack_6202_5	site	dyads_m7	D	63	72	AGAGAGACGG	7.6
hg38_ct_MyTrack_6202_6	site	dyads_m7	D	-358	-349	ACAGAGAAAG	8.0
hg38_ct_MyTrack_6202_0	site	dyads_m7	R	-448	-439	GGAGAGAAGC	7.6
hg38_ct_MyTrack_6202_0	site	dyads_m7	D	-21	-12	GTAGAGACGG	7.5
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	-399	-390	GGAGAGAAAC	7.9
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	-315	-306	GGAGAGAAAC	7.9
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	-231	-222	GGAGAGAAGC	7.6
hg38_ct_MyTrack_6202_2	site	dyads_m7	R	-176	-167	AGAGAGAAGT	7.9
hg38_ct_MyTrack_6202_3	site	dyads_m7	R	-82	-73	AGAGAGAAAT	7.9
hg38_ct_MyTrack_6202_5	site	dyads_m7	D	-283	-274	GCAGAGAAGA	7.6
hg38_ct_MyTrack_6202_7	site	dyads_m7	R	73	82	AGAGAGAAAT	7.9
hg38_ct_MyTrack_6202_1	site	dyads_m7	D	294	303	GGAGAGAAAT	7.9
hg38_ct_MyTrack_6202_4	site	dyads_m7	D	-130	-121	GAAGAGAAGA	7.5
hg38_ct_MyTrack_6202_5	site	dyads_m7	R	463	472	ACAGAGAAGG	8.0
hg38_ct_MyTrack_6202_6	site	dyads_m7	R	-471	-462	GGAGAGAAAT	7.9
hg38_ct_MyTrack_6202_7	site	dyads_m7	R	-288	-279	GTAGAGACGG	7.5
hg38_ct_MyTrack_6202_10	site	dyads_m7	D	-141	-132	GGAGAGAAGT	7.9
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	304	313	AGAGAGAAAG	8.1
hg38_ct_MyTrack_6202_2	site	dyads_m7	R	-206	-197	GTAGAGACGG	7.5
hg38_ct_MyTrack_6202_4	site	dyads_m7	R	95	104	AGAGAGAACG	9.4
hg38_ct_MyTrack_6202_5	site	dyads_m7	D	-254	-245	GAAGAGAAAT	7.5
hg38_ct_MyTrack_6202_0	site	dyads_m7	D	154	163	TGAGAGAAAG	7.6
hg38_ct_MyTrack_6202_0	site	dyads_m7	R	-67	-58	ACAGAGAATG	7.7
hg38_ct_MyTrack_6202_1	site	dyads_m7	R	-187	-178	ACAGAGAAGG	8.0
hg38_ct_MyTrack_6202_2	site	dyads_m7	D	-84	-75	ACAGAGAATA	7.8
hg38_ct_MyTrack_6202_2	site	dyads_m7	D	28	37	TCAGAGAACG	8.6
hg38_ct_MyTrack_6202_3	site	dyads_m7	D	-252	-243	GCAGAGAAGA	7.6
hg38_ct_MyTrack_6202_3	site	dyads_m7	R	-188	-179	GAAGAGAAAT	7.5
hg38_ct_MyTrack_6202_3	site	dyads_m7	R	86	95	GTAGAGACGG	7.5
hg38_ct_MyTrack_6202_0	site	dyads_m7	R	-426	-417	ATAGAGAAGA	7.8
hg38_ct_MyTrack_6202_0	site	dyads_m7	R	-206	-197	GCAGAGAAAT	7.6
hg38_ct_MyTrack_6202_0	site	dyads_m7	R	-176	-167	AGAGAGAAGT	7.9
hg38_ct_MyTrack_6202_0	site	dyads_m7	D	-254	-245	GAAGAGAAAT	7.5
hg38_ct_MyTrack_6202_0	site	dyads_m7	D	-254	-245	GAAGAGAAAT	7.5
hg38_ct_MyTrack_6202_0	site	dyads_m7	D	-254	-245	GAAGAGAAAT	7.5
hg38_ct_MyTrack_6202_0	site	dyads_m7	D	-254	-245	GAAGAGAAAT	7.5
;
; Matrices
;	matrix	name    	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_m7	10	4	0	-29.700	9.100	38.800	a:0.296 c:0.204 g:0.202 t:0.298 
; Number of sequences scanned	226
; Sum of sequence lengths	226000
; N residues           	0
; Matches per matrix
;	matrix	name    	matches	scored
;	1	dyads_m7       	161	0
;		TOTAL          	161	0
; Host name	rsat
; Job started	2026-02-26.200838
; Job done	2026-02-26.200838
; Seconds	0.16
;	user	0.16
;	system	0.04
;	cuser	0.11
;	csystem	0.02
