; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m1/peak-motifs_dyads_m1_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29599
;		c	0.20450
;		g	0.20176
;		t	0.29775
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
hg38_ct_MyTrack_6202_0	site	dyads_m1	R	126	139	TCATAAAATAAAGA	8.9
hg38_ct_MyTrack_6202_1	site	dyads_m1	R	126	139	TCATAAAATAAAGA	8.9
hg38_ct_MyTrack_6202_5	site	dyads_m1	R	399	412	ATATAAAATAAGTA	10.6
hg38_ct_MyTrack_6202_6	site	dyads_m1	R	-462	-449	ATGTAAAATAATGC	7.6
hg38_ct_MyTrack_6202_6	site	dyads_m1	R	-52	-39	TAATAAAATATATT	8.7
hg38_ct_MyTrack_6202_7	site	dyads_m1	R	452	465	GTATATAATAAACA	7.9
hg38_ct_MyTrack_6202_9	site	dyads_m1	R	-164	-151	TAATAAAATAAAAT	10.2
hg38_ct_MyTrack_6202_9	site	dyads_m1	D	287	300	AAATAAAATAAAAT	9.8
hg38_ct_MyTrack_6202_9	site	dyads_m1	D	292	305	AAATAAAATAAAAT	9.8
hg38_ct_MyTrack_6202_9	site	dyads_m1	D	297	310	AAATAAAATAAAAA	9.7
hg38_ct_MyTrack_6202_12	site	dyads_m1	D	298	311	CAATAAAATAATTC	9.8
hg38_ct_MyTrack_6202_1	site	dyads_m1	D	-429	-416	GAAAAAAATAATAA	8.2
hg38_ct_MyTrack_6202_1	site	dyads_m1	D	-64	-51	GAAGAAAATAATAA	7.6
hg38_ct_MyTrack_6202_1	site	dyads_m1	D	117	130	TTATAAAATTATAT	10.0
hg38_ct_MyTrack_6202_1	site	dyads_m1	D	330	343	AATAAAAATAATAA	7.6
hg38_ct_MyTrack_6202_4	site	dyads_m1	R	-175	-162	ACACAAAATAATTA	8.6
hg38_ct_MyTrack_6202_5	site	dyads_m1	D	-304	-291	AAATAAAATATGTA	8.0
hg38_ct_MyTrack_6202_12	site	dyads_m1	D	237	250	TCATAAAATTAATT	7.5
hg38_ct_MyTrack_6202_12	site	dyads_m1	R	342	355	CGTTAAAATAATTC	9.3
hg38_ct_MyTrack_6202_14	site	dyads_m1	R	-336	-323	TTCTAAAATAAATT	7.8
hg38_ct_MyTrack_6202_14	site	dyads_m1	R	-297	-284	TCATAAAATAAGTG	8.5
hg38_ct_MyTrack_6202_14	site	dyads_m1	R	168	181	AAATAAAATAAAAA	9.7
hg38_ct_MyTrack_6202_15	site	dyads_m1	R	-414	-401	AAATAAAATATTCA	8.2
hg38_ct_MyTrack_6202_15	site	dyads_m1	R	-101	-88	TAATAAAATAAATT	10.2
hg38_ct_MyTrack_6202_15	site	dyads_m1	R	199	212	ACATAGAATAATAT	8.8
hg38_ct_MyTrack_6202_15	site	dyads_m1	D	229	242	TTACAAAATAATTT	8.5
hg38_ct_MyTrack_6202_17	site	dyads_m1	R	-91	-78	TAATATTATAATTA	7.8
hg38_ct_MyTrack_6202_8	site	dyads_m1	R	-436	-423	TAAAAAAATAATAA	8.7
hg38_ct_MyTrack_6202_8	site	dyads_m1	R	22	35	TATTAAAATGATAA	7.6
hg38_ct_MyTrack_6202_9	site	dyads_m1	D	367	380	ATATATAATTATAT	8.6
hg38_ct_MyTrack_6202_9	site	dyads_m1	R	369	382	ATATATAATTATAT	8.6
hg38_ct_MyTrack_6202_9	site	dyads_m1	D	379	392	ATATAAAATTATAC	9.9
hg38_ct_MyTrack_6202_9	site	dyads_m1	D	391	404	ACATATAATTATAT	7.9
hg38_ct_MyTrack_6202_9	site	dyads_m1	R	393	406	ATATATAATTATAT	8.6
hg38_ct_MyTrack_6202_9	site	dyads_m1	D	401	414	ATATATAATATATA	7.9
hg38_ct_MyTrack_6202_9	site	dyads_m1	D	426	439	ATATAAAATATATA	9.5
hg38_ct_MyTrack_6202_9	site	dyads_m1	R	439	452	ATATAAAATTATAT	10.2
hg38_ct_MyTrack_6202_9	site	dyads_m1	D	447	460	TTATATAATTATAT	8.3
hg38_ct_MyTrack_6202_9	site	dyads_m1	R	449	462	ATATATAATTATAT	8.6
hg38_ct_MyTrack_6202_10	site	dyads_m1	R	412	425	AAATAGAATAATAA	8.6
hg38_ct_MyTrack_6202_2	site	dyads_m1	D	203	216	GAATAGAATAATAA	8.4
hg38_ct_MyTrack_6202_4	site	dyads_m1	R	-435	-422	ATATAAAATGATAT	9.4
hg38_ct_MyTrack_6202_4	site	dyads_m1	D	-344	-331	AATTAAAATAATTT	9.5
hg38_ct_MyTrack_6202_0	site	dyads_m1	R	-469	-456	AAAGAAAATAATTA	7.7
hg38_ct_MyTrack_6202_3	site	dyads_m1	D	-403	-390	AAATTAAATAATTA	8.9
hg38_ct_MyTrack_6202_4	site	dyads_m1	D	-245	-232	TGATATAATAATTT	8.5
hg38_ct_MyTrack_6202_8	site	dyads_m1	R	392	405	ACATAAAATAAACA	9.1
hg38_ct_MyTrack_6202_9	site	dyads_m1	D	-42	-29	ACTTAAAATAATCA	8.7
hg38_ct_MyTrack_6202_9	site	dyads_m1	D	1	14	AATTAAAATAAATA	8.9
hg38_ct_MyTrack_6202_9	site	dyads_m1	R	130	143	AAATAAAATTAAAA	7.6
hg38_ct_MyTrack_6202_10	site	dyads_m1	R	295	308	ATATAATATAATCT	9.2
hg38_ct_MyTrack_6202_11	site	dyads_m1	D	-471	-458	AAATAAAATTATAA	9.4
hg38_ct_MyTrack_6202_12	site	dyads_m1	D	-385	-372	AAATAAAATATATC	8.0
hg38_ct_MyTrack_6202_12	site	dyads_m1	R	138	151	TGATAAAATTATGA	7.6
hg38_ct_MyTrack_6202_12	site	dyads_m1	D	147	160	TATCAAAATAATAT	7.9
hg38_ct_MyTrack_6202_13	site	dyads_m1	R	86	99	GAATAAAATAAACA	9.0
hg38_ct_MyTrack_6202_14	site	dyads_m1	D	-352	-339	TTATATAATATTTT	7.6
hg38_ct_MyTrack_6202_14	site	dyads_m1	R	-348	-335	ATTTAAAATATTAT	8.1
hg38_ct_MyTrack_6202_20	site	dyads_m1	D	70	83	TTATATAATATTAA	8.2
hg38_ct_MyTrack_6202_20	site	dyads_m1	R	461	474	TTATGAAATAATTT	8.2
hg38_ct_MyTrack_6202_21	site	dyads_m1	D	-344	-331	TCATAAAATTATGT	8.3
hg38_ct_MyTrack_6202_25	site	dyads_m1	R	-408	-395	AAACAAAATAATGA	7.6
hg38_ct_MyTrack_6202_28	site	dyads_m1	D	8	21	ATTTAATATAATAT	8.6
hg38_ct_MyTrack_6202_0	site	dyads_m1	D	-169	-156	TACTAAAATAAATA	8.9
hg38_ct_MyTrack_6202_1	site	dyads_m1	R	126	139	TCATAAAATAAAGA	8.9
hg38_ct_MyTrack_6202_3	site	dyads_m1	R	-268	-255	ATATAAAATATAAA	8.9
hg38_ct_MyTrack_6202_5	site	dyads_m1	R	-173	-160	GTATAAAATAATCT	10.6
hg38_ct_MyTrack_6202_8	site	dyads_m1	D	39	52	TATTAAAATAACTT	8.2
hg38_ct_MyTrack_6202_9	site	dyads_m1	D	-197	-184	TTTTAAAATAATGG	7.9
hg38_ct_MyTrack_6202_9	site	dyads_m1	R	-138	-125	GTATAATATAATAT	10.4
hg38_ct_MyTrack_6202_11	site	dyads_m1	R	-231	-218	AGATAAAATAAGGA	8.0
hg38_ct_MyTrack_6202_12	site	dyads_m1	R	-317	-304	GGATAATATAATGA	7.8
hg38_ct_MyTrack_6202_0	site	dyads_m1	D	53	66	AATTAAAATAAATT	8.4
hg38_ct_MyTrack_6202_1	site	dyads_m1	D	-487	-474	TCATAAAATAAGGA	8.5
hg38_ct_MyTrack_6202_5	site	dyads_m1	R	-457	-444	TTTTAAAATAAGAT	8.0
hg38_ct_MyTrack_6202_8	site	dyads_m1	R	-147	-134	AACTAAAATAATTA	9.6
hg38_ct_MyTrack_6202_8	site	dyads_m1	D	-121	-108	ATTTATAATAATTC	7.6
hg38_ct_MyTrack_6202_10	site	dyads_m1	D	-287	-274	TAATAATATAACTT	7.9
hg38_ct_MyTrack_6202_1	site	dyads_m1	D	-185	-172	AAATAAAATAAATA	10.3
hg38_ct_MyTrack_6202_0	site	dyads_m1	D	-496	-483	GATTAAAATAATTC	9.0
hg38_ct_MyTrack_6202_1	site	dyads_m1	D	-409	-396	ATATAATATATATA	7.8
hg38_ct_MyTrack_6202_6	site	dyads_m1	R	404	417	AAAAAAAATAATTA	8.2
hg38_ct_MyTrack_6202_0	site	dyads_m1	D	-285	-272	ATATAAAATTACTA	8.3
hg38_ct_MyTrack_6202_1	site	dyads_m1	R	418	431	TTTTAAAATAAGAA	7.8
hg38_ct_MyTrack_6202_5	site	dyads_m1	D	-324	-311	AATTAAAATAATAT	10.2
hg38_ct_MyTrack_6202_5	site	dyads_m1	R	20	33	CAATAAAATAATAC	10.5
hg38_ct_MyTrack_6202_5	site	dyads_m1	R	64	77	TAACAAAATAATGA	8.0
hg38_ct_MyTrack_6202_6	site	dyads_m1	D	-408	-395	TAATAAAATAAATA	10.7
hg38_ct_MyTrack_6202_7	site	dyads_m1	D	336	349	AACTAAAATAAAAT	8.0
hg38_ct_MyTrack_6202_0	site	dyads_m1	R	-255	-242	TCATAAAATAAAGA	8.9
hg38_ct_MyTrack_6202_1	site	dyads_m1	R	289	302	TAATAAAATAAGAA	9.8
hg38_ct_MyTrack_6202_4	site	dyads_m1	R	16	29	ATAAAAAATAAATA	7.8
hg38_ct_MyTrack_6202_4	site	dyads_m1	R	244	257	TTATAAAATACAAC	7.7
hg38_ct_MyTrack_6202_9	site	dyads_m1	R	68	81	ATATAAAATAAGAA	10.1
hg38_ct_MyTrack_6202_9	site	dyads_m1	R	164	177	AAATACAATAATAT	8.7
hg38_ct_MyTrack_6202_10	site	dyads_m1	D	66	79	TTATAAAATATATT	8.7
hg38_ct_MyTrack_6202_14	site	dyads_m1	R	114	127	TTTTAAAATAAGTA	8.3
hg38_ct_MyTrack_6202_14	site	dyads_m1	R	126	139	ATAAAAAATAATTT	8.4
hg38_ct_MyTrack_6202_14	site	dyads_m1	R	400	413	ATATAATATAGTAA	7.7
hg38_ct_MyTrack_6202_1	site	dyads_m1	R	85	98	TGATAAATTAATAA	7.9
hg38_ct_MyTrack_6202_3	site	dyads_m1	D	-473	-460	TCTTAAAATAAATT	8.0
hg38_ct_MyTrack_6202_1	site	dyads_m1	R	57	70	GTATAAAATAACTA	10.2
hg38_ct_MyTrack_6202_0	site	dyads_m1	D	-468	-455	GAATAAAATAACAT	9.4
hg38_ct_MyTrack_6202_0	site	dyads_m1	D	-463	-450	AAATAACATAATAA	8.2
hg38_ct_MyTrack_6202_0	site	dyads_m1	D	-325	-312	GAATAAAATAATAA	11.3
hg38_ct_MyTrack_6202_3	site	dyads_m1	R	464	477	CTAAAAAATAATAA	8.0
hg38_ct_MyTrack_6202_4	site	dyads_m1	R	149	162	ACATAAAATTAATT	7.7
hg38_ct_MyTrack_6202_7	site	dyads_m1	R	333	346	TTTTAAAATAATAA	9.9
hg38_ct_MyTrack_6202_8	site	dyads_m1	D	-370	-357	TTCTAAAATTATAT	7.6
hg38_ct_MyTrack_6202_10	site	dyads_m1	R	382	395	AAATATAATAATTA	9.7
hg38_ct_MyTrack_6202_4	site	dyads_m1	R	-10	3	AAATTAAATAATGT	8.0
hg38_ct_MyTrack_6202_6	site	dyads_m1	D	-165	-152	TAACAAAATAATAT	9.2
hg38_ct_MyTrack_6202_6	site	dyads_m1	R	-422	-409	GTATAAAATATAAT	8.9
hg38_ct_MyTrack_6202_1	site	dyads_m1	R	465	478	ACATCAAATAATTT	7.6
hg38_ct_MyTrack_6202_2	site	dyads_m1	R	-398	-385	TTATAAAAGAATAC	7.6
hg38_ct_MyTrack_6202_2	site	dyads_m1	R	-387	-374	AAATAAAATATTTA	9.3
hg38_ct_MyTrack_6202_2	site	dyads_m1	R	-129	-116	ATTTAAAATAAAAC	8.1
hg38_ct_MyTrack_6202_2	site	dyads_m1	D	78	91	TTATAATATTATTT	7.6
hg38_ct_MyTrack_6202_2	site	dyads_m1	R	78	91	AAATAATATTATAA	7.7
hg38_ct_MyTrack_6202_2	site	dyads_m1	R	83	96	CTATGAAATAATAT	8.2
hg38_ct_MyTrack_6202_2	site	dyads_m1	D	140	153	ATATAATATATTAC	8.2
hg38_ct_MyTrack_6202_2	site	dyads_m1	R	250	263	ATATATAATAAGTA	9.0
hg38_ct_MyTrack_6202_2	site	dyads_m1	R	411	424	AAATAAAATATAAA	8.2
hg38_ct_MyTrack_6202_4	site	dyads_m1	R	-42	-29	AAATAAAATACTAA	9.0
hg38_ct_MyTrack_6202_8	site	dyads_m1	R	366	379	AGATAAATTAATTA	7.8
hg38_ct_MyTrack_6202_10	site	dyads_m1	R	-352	-339	AAATGAAATAATAA	8.4
hg38_ct_MyTrack_6202_10	site	dyads_m1	D	-227	-214	CTATAAAATAGTTT	7.8
hg38_ct_MyTrack_6202_1	site	dyads_m1	R	-255	-242	TCATAAAATAAAGA	8.9
hg38_ct_MyTrack_6202_1	site	dyads_m1	R	315	328	GAATAAAATAATAA	11.3
hg38_ct_MyTrack_6202_1	site	dyads_m1	R	453	466	AAATAACATAATAA	8.2
hg38_ct_MyTrack_6202_1	site	dyads_m1	R	458	471	GAATAAAATAACAT	9.4
;
; Matrices
;	matrix	name    	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_m1	14	4	0	-22.100	11.100	33.200	a:0.296 c:0.204 g:0.202 t:0.298 
; Number of sequences scanned	226
; Sum of sequence lengths	226000
; N residues           	0
; Matches per matrix
;	matrix	name    	matches	scored
;	1	dyads_m1       	131	0
;		TOTAL          	131	0
; Host name	rsat
; Job started	2026-02-26.200832
; Job done	2026-02-26.200832
; Seconds	0.23
;	user	0.23
;	system	0.01
;	cuser	0.09
;	csystem	0.03
