; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_7nt_mkv4_m3/peak-motifs_oligos_7nt_mkv4_m3_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29599
;		c	0.20450
;		g	0.20176
;		t	0.29775
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
hg38_ct_MyTrack_6202_3	site	oligos_7nt_mkv4_m3	D	-15	-5	TAGAGTGCAAT	8.9
hg38_ct_MyTrack_6202_3	site	oligos_7nt_mkv4_m3	D	306	316	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_4	site	oligos_7nt_mkv4_m3	R	348	358	TGGAGTGCATT	8.9
hg38_ct_MyTrack_6202_9	site	oligos_7nt_mkv4_m3	R	420	430	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_11	site	oligos_7nt_mkv4_m3	D	96	106	GAGAGCGCACG	8.6
hg38_ct_MyTrack_6202_3	site	oligos_7nt_mkv4_m3	D	434	444	GCGAGTGCACA	9.4
hg38_ct_MyTrack_6202_5	site	oligos_7nt_mkv4_m3	D	-97	-87	TGGAGTGCATG	8.2
hg38_ct_MyTrack_6202_10	site	oligos_7nt_mkv4_m3	R	-152	-142	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_11	site	oligos_7nt_mkv4_m3	R	-254	-244	GGGAGTGCACT	9.0
hg38_ct_MyTrack_6202_11	site	oligos_7nt_mkv4_m3	D	-213	-203	CTGAGTGCAAC	7.9
hg38_ct_MyTrack_6202_13	site	oligos_7nt_mkv4_m3	R	72	82	CTGAGTGCAGC	8.7
hg38_ct_MyTrack_6202_14	site	oligos_7nt_mkv4_m3	D	216	226	TGGAGTGCGGT	7.7
hg38_ct_MyTrack_6202_4	site	oligos_7nt_mkv4_m3	D	-22	-12	TTGAGTGCACA	8.7
hg38_ct_MyTrack_6202_9	site	oligos_7nt_mkv4_m3	R	301	311	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_1	site	oligos_7nt_mkv4_m3	R	214	224	ATGAGTGCCGA	7.7
hg38_ct_MyTrack_6202_5	site	oligos_7nt_mkv4_m3	D	-123	-113	CAGAGTGCATA	8.5
hg38_ct_MyTrack_6202_8	site	oligos_7nt_mkv4_m3	D	226	236	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_6	site	oligos_7nt_mkv4_m3	R	427	437	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_12	site	oligos_7nt_mkv4_m3	R	461	471	GCGTGTGCAGC	7.9
hg38_ct_MyTrack_6202_13	site	oligos_7nt_mkv4_m3	R	-318	-308	GAGAGTGCATC	8.9
hg38_ct_MyTrack_6202_14	site	oligos_7nt_mkv4_m3	R	10	20	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_21	site	oligos_7nt_mkv4_m3	D	162	172	CAGAGTGCATT	8.5
hg38_ct_MyTrack_6202_26	site	oligos_7nt_mkv4_m3	D	-196	-186	AAGCGTGCAGT	7.5
hg38_ct_MyTrack_6202_6	site	oligos_7nt_mkv4_m3	R	-338	-328	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_7	site	oligos_7nt_mkv4_m3	D	191	201	AGGAGTGCAGC	8.8
hg38_ct_MyTrack_6202_8	site	oligos_7nt_mkv4_m3	R	297	307	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_10	site	oligos_7nt_mkv4_m3	R	-99	-89	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_11	site	oligos_7nt_mkv4_m3	R	254	264	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_12	site	oligos_7nt_mkv4_m3	R	83	93	AAGAGTGCATA	8.6
hg38_ct_MyTrack_6202_0	site	oligos_7nt_mkv4_m3	R	243	253	ATGAGTGCAGG	8.5
hg38_ct_MyTrack_6202_6	site	oligos_7nt_mkv4_m3	D	488	498	TAGAGCGCACC	7.6
hg38_ct_MyTrack_6202_8	site	oligos_7nt_mkv4_m3	R	-334	-324	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_1	site	oligos_7nt_mkv4_m3	R	-238	-228	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_1	site	oligos_7nt_mkv4_m3	D	-354	-344	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_1	site	oligos_7nt_mkv4_m3	R	244	254	TGGAGTGCATT	8.9
hg38_ct_MyTrack_6202_4	site	oligos_7nt_mkv4_m3	D	318	328	CTGAGTGCAAC	7.9
hg38_ct_MyTrack_6202_5	site	oligos_7nt_mkv4_m3	R	-298	-288	TGGAGTGCAGC	9.1
hg38_ct_MyTrack_6202_6	site	oligos_7nt_mkv4_m3	R	-488	-478	CGGAGTGCTCG	8.1
hg38_ct_MyTrack_6202_6	site	oligos_7nt_mkv4_m3	D	275	285	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_2	site	oligos_7nt_mkv4_m3	R	148	158	AGGAGTGCAGA	8.7
hg38_ct_MyTrack_6202_3	site	oligos_7nt_mkv4_m3	R	142	152	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_4	site	oligos_7nt_mkv4_m3	R	-44	-34	TGGAGCGCACG	8.5
hg38_ct_MyTrack_6202_5	site	oligos_7nt_mkv4_m3	D	163	173	GGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_5	site	oligos_7nt_mkv4_m3	D	350	360	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_6	site	oligos_7nt_mkv4_m3	R	-13	-3	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_7	site	oligos_7nt_mkv4_m3	D	-242	-232	TAGAGTGCAGT	10.0
hg38_ct_MyTrack_6202_8	site	oligos_7nt_mkv4_m3	R	-14	-4	GAGAGTGCAGG	8.6
hg38_ct_MyTrack_6202_1	site	oligos_7nt_mkv4_m3	R	-241	-231	CGGGGTGCAGT	8.0
hg38_ct_MyTrack_6202_5	site	oligos_7nt_mkv4_m3	R	411	421	TGGAGTGCAAT	8.5
hg38_ct_MyTrack_6202_9	site	oligos_7nt_mkv4_m3	D	346	356	AAGAGTGCACA	8.3
hg38_ct_MyTrack_6202_10	site	oligos_7nt_mkv4_m3	D	-291	-281	CTGAGTGCAGT	9.2
hg38_ct_MyTrack_6202_2	site	oligos_7nt_mkv4_m3	R	167	177	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_6	site	oligos_7nt_mkv4_m3	D	-51	-41	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_7	site	oligos_7nt_mkv4_m3	R	-288	-278	TGGAGTGCAAT	8.5
hg38_ct_MyTrack_6202_10	site	oligos_7nt_mkv4_m3	D	199	209	AGGAGTGCAGC	8.8
hg38_ct_MyTrack_6202_1	site	oligos_7nt_mkv4_m3	D	-424	-414	ATGAGTGCACC	8.7
hg38_ct_MyTrack_6202_0	site	oligos_7nt_mkv4_m3	R	152	162	TAGAGTGCGGT	8.1
hg38_ct_MyTrack_6202_1	site	oligos_7nt_mkv4_m3	D	-433	-423	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_1	site	oligos_7nt_mkv4_m3	D	-205	-195	TGGAGTGCATT	8.9
hg38_ct_MyTrack_6202_1	site	oligos_7nt_mkv4_m3	R	319	329	TGGAGTGCAAT	8.5
hg38_ct_MyTrack_6202_2	site	oligos_7nt_mkv4_m3	R	-408	-398	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_5	site	oligos_7nt_mkv4_m3	D	-247	-237	GAGAGTGCCGA	7.8
hg38_ct_MyTrack_6202_5	site	oligos_7nt_mkv4_m3	D	-171	-161	GGGAGTGCACA	8.6
hg38_ct_MyTrack_6202_6	site	oligos_7nt_mkv4_m3	D	225	235	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_7	site	oligos_7nt_mkv4_m3	D	454	464	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_1	site	oligos_7nt_mkv4_m3	R	-291	-281	TGGCGTGCAGT	7.9
hg38_ct_MyTrack_6202_6	site	oligos_7nt_mkv4_m3	D	57	67	CGGAGTGCAGG	9.8
hg38_ct_MyTrack_6202_7	site	oligos_7nt_mkv4_m3	R	-155	-145	TGGAGTGCAAT	8.5
hg38_ct_MyTrack_6202_7	site	oligos_7nt_mkv4_m3	R	423	433	AAGAGTGCAAC	8.0
hg38_ct_MyTrack_6202_8	site	oligos_7nt_mkv4_m3	R	-160	-150	CTGAGTGCACA	8.3
hg38_ct_MyTrack_6202_0	site	oligos_7nt_mkv4_m3	R	-269	-259	AAGAGTGCATT	8.6
hg38_ct_MyTrack_6202_0	site	oligos_7nt_mkv4_m3	R	-127	-117	TGGAGTGCAAA	7.9
hg38_ct_MyTrack_6202_0	site	oligos_7nt_mkv4_m3	D	355	365	TGGAGTGCAAT	8.5
hg38_ct_MyTrack_6202_2	site	oligos_7nt_mkv4_m3	D	466	476	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_5	site	oligos_7nt_mkv4_m3	R	-211	-201	TCGAGTGCAGA	9.8
hg38_ct_MyTrack_6202_3	site	oligos_7nt_mkv4_m3	R	220	230	TGGAGTGCACT	9.0
hg38_ct_MyTrack_6202_4	site	oligos_7nt_mkv4_m3	R	-388	-378	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_0	site	oligos_7nt_mkv4_m3	D	-120	-110	TGGAGTGCAGC	9.1
hg38_ct_MyTrack_6202_0	site	oligos_7nt_mkv4_m3	R	225	235	TTGAGCGCACT	7.5
hg38_ct_MyTrack_6202_0	site	oligos_7nt_mkv4_m3	D	401	411	TGGAGTGCAGT	9.5
hg38_ct_MyTrack_6202_0	site	oligos_7nt_mkv4_m3	R	-211	-201	TCGAGTGCAGA	9.8
hg38_ct_MyTrack_6202_0	site	oligos_7nt_mkv4_m3	R	-211	-201	TCGAGTGCAGA	9.8
hg38_ct_MyTrack_6202_0	site	oligos_7nt_mkv4_m3	R	-211	-201	TCGAGTGCAGA	9.8
hg38_ct_MyTrack_6202_0	site	oligos_7nt_mkv4_m3	R	-211	-201	TCGAGTGCAGA	9.8
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_7nt_mkv4_m3	11	4	0	-17.700	10.300	28.000	a:0.296 c:0.204 g:0.202 t:0.298 
; Number of sequences scanned	226
; Sum of sequence lengths	226000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_7nt_mkv4_m3	84	0
;		TOTAL          	84	0
; Host name	rsat
; Job started	2026-02-26.200828
; Job done	2026-02-26.200828
; Seconds	0.23
;	user	0.23
;	system	0.02
;	cuser	0.11
;	csystem	0.02
