; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m6/peak-motifs_dyads_m6.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m6/peak-motifs_dyads_m6_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m6/peak-motifs_dyads_m6.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m6/peak-motifs_dyads_m6_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29599
;		c	0.20450
;		g	0.20176
;		t	0.29775
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
hg38_ct_MyTrack_6202_0	site	dyads_m6	D	-298	-289	AGAATGTAAT	7.8
hg38_ct_MyTrack_6202_0	site	dyads_m6	D	231	240	AAAATGTAAT	7.9
hg38_ct_MyTrack_6202_0	site	dyads_m6	D	298	307	AGAATGTATA	8.9
hg38_ct_MyTrack_6202_1	site	dyads_m6	D	-298	-289	AGAATGTAAT	7.8
hg38_ct_MyTrack_6202_1	site	dyads_m6	D	231	240	AAAATGTAAT	7.9
hg38_ct_MyTrack_6202_1	site	dyads_m6	D	298	307	AGAATGTATA	8.9
hg38_ct_MyTrack_6202_2	site	dyads_m6	R	155	164	TTAATGTAAT	7.6
hg38_ct_MyTrack_6202_2	site	dyads_m6	D	352	361	AAAATGTAAA	8.0
hg38_ct_MyTrack_6202_4	site	dyads_m6	D	-123	-114	TGAATGTAAG	7.5
hg38_ct_MyTrack_6202_7	site	dyads_m6	D	299	308	TAAATGTAAT	8.3
hg38_ct_MyTrack_6202_8	site	dyads_m6	R	145	154	GTAATGTATG	7.9
hg38_ct_MyTrack_6202_9	site	dyads_m6	R	-437	-428	AGAATGTAAA	7.8
hg38_ct_MyTrack_6202_10	site	dyads_m6	R	-251	-242	TCAATGTATA	8.2
hg38_ct_MyTrack_6202_10	site	dyads_m6	D	-169	-160	TAAATGTACA	8.5
hg38_ct_MyTrack_6202_10	site	dyads_m6	D	64	73	AAAATGTACA	8.1
hg38_ct_MyTrack_6202_12	site	dyads_m6	R	-257	-248	AGAATGTACT	7.8
hg38_ct_MyTrack_6202_12	site	dyads_m6	D	380	389	AAAATGTAAT	7.9
hg38_ct_MyTrack_6202_1	site	dyads_m6	D	-450	-441	AAAACGTAGT	7.6
hg38_ct_MyTrack_6202_1	site	dyads_m6	D	-359	-350	ATAACGTAAA	7.6
hg38_ct_MyTrack_6202_1	site	dyads_m6	R	-346	-337	TTAATGTATG	7.9
hg38_ct_MyTrack_6202_4	site	dyads_m6	R	282	291	AAAATGTAAA	8.0
hg38_ct_MyTrack_6202_4	site	dyads_m6	R	395	404	AAAATGTATA	9.0
hg38_ct_MyTrack_6202_8	site	dyads_m6	D	-105	-96	TAAATGTATT	8.7
hg38_ct_MyTrack_6202_10	site	dyads_m6	D	-77	-68	AGAATGTAAT	7.8
hg38_ct_MyTrack_6202_12	site	dyads_m6	R	363	372	GAAATGTATT	8.1
hg38_ct_MyTrack_6202_13	site	dyads_m6	D	277	286	TGAATGTATC	7.6
hg38_ct_MyTrack_6202_15	site	dyads_m6	D	-306	-297	GGAATGTATG	7.8
hg38_ct_MyTrack_6202_17	site	dyads_m6	R	-215	-206	AAAATGTATG	8.3
hg38_ct_MyTrack_6202_0	site	dyads_m6	R	-91	-82	TGAATGTACT	7.7
hg38_ct_MyTrack_6202_0	site	dyads_m6	R	413	422	TCAATGTATA	8.2
hg38_ct_MyTrack_6202_3	site	dyads_m6	R	-247	-238	GAAATGTACA	7.9
hg38_ct_MyTrack_6202_3	site	dyads_m6	D	225	234	AGAATGTATA	8.9
hg38_ct_MyTrack_6202_4	site	dyads_m6	R	-213	-204	AGAATGTAAT	7.8
hg38_ct_MyTrack_6202_4	site	dyads_m6	D	295	304	AAAACGTACG	9.3
hg38_ct_MyTrack_6202_4	site	dyads_m6	R	299	308	TGAACGTACG	9.1
hg38_ct_MyTrack_6202_6	site	dyads_m6	D	483	492	AAAATGTAGA	8.0
hg38_ct_MyTrack_6202_7	site	dyads_m6	D	456	465	GCAATGTATA	7.9
hg38_ct_MyTrack_6202_9	site	dyads_m6	R	-325	-316	AGAATGTAGA	7.9
hg38_ct_MyTrack_6202_9	site	dyads_m6	R	-185	-176	TTAATGTACT	7.5
hg38_ct_MyTrack_6202_9	site	dyads_m6	R	-142	-133	ATAATGTACA	8.1
hg38_ct_MyTrack_6202_9	site	dyads_m6	D	-130	-121	TAAATGTATA	9.3
hg38_ct_MyTrack_6202_9	site	dyads_m6	D	-105	-96	GTAACGTATA	8.3
hg38_ct_MyTrack_6202_10	site	dyads_m6	D	-32	-23	TGAATGTACT	7.7
hg38_ct_MyTrack_6202_10	site	dyads_m6	R	133	142	TTAATGTATA	8.6
hg38_ct_MyTrack_6202_3	site	dyads_m6	D	-47	-38	TAAATGTAAA	8.3
hg38_ct_MyTrack_6202_4	site	dyads_m6	D	-211	-202	AAAATGTATT	8.3
hg38_ct_MyTrack_6202_7	site	dyads_m6	R	-452	-443	GTAATGTATG	7.9
hg38_ct_MyTrack_6202_8	site	dyads_m6	R	-136	-127	TGAATGTATT	8.1
hg38_ct_MyTrack_6202_1	site	dyads_m6	R	-381	-372	AGAATGTAGA	7.9
hg38_ct_MyTrack_6202_7	site	dyads_m6	D	-44	-35	TAAATGTAAA	8.3
hg38_ct_MyTrack_6202_7	site	dyads_m6	D	-18	-9	AAAATGTAAA	8.0
hg38_ct_MyTrack_6202_8	site	dyads_m6	D	-123	-114	AAAATGTATT	8.3
hg38_ct_MyTrack_6202_8	site	dyads_m6	D	-87	-78	AAAATGTAGT	7.9
hg38_ct_MyTrack_6202_8	site	dyads_m6	D	471	480	GTAATGTATT	7.9
hg38_ct_MyTrack_6202_9	site	dyads_m6	R	60	69	ACAATGTATA	8.5
hg38_ct_MyTrack_6202_9	site	dyads_m6	R	317	326	ATAATGTATT	8.2
hg38_ct_MyTrack_6202_10	site	dyads_m6	D	-394	-385	TGAATGTAAG	7.5
hg38_ct_MyTrack_6202_10	site	dyads_m6	D	116	125	TTAATGTAGA	7.6
hg38_ct_MyTrack_6202_10	site	dyads_m6	D	238	247	GTAATGTATT	7.9
hg38_ct_MyTrack_6202_10	site	dyads_m6	R	281	290	ATAATGTAAA	7.9
hg38_ct_MyTrack_6202_11	site	dyads_m6	D	-430	-421	GAAATGTAAT	7.7
hg38_ct_MyTrack_6202_11	site	dyads_m6	D	-263	-254	AGAATGTACA	8.0
hg38_ct_MyTrack_6202_12	site	dyads_m6	R	-302	-293	GAAATGTATA	8.8
hg38_ct_MyTrack_6202_12	site	dyads_m6	D	-108	-99	AAAACGTATA	8.7
hg38_ct_MyTrack_6202_12	site	dyads_m6	R	-56	-47	TAAATGTAAT	8.3
hg38_ct_MyTrack_6202_13	site	dyads_m6	D	-18	-9	TAAATGTATA	9.3
hg38_ct_MyTrack_6202_13	site	dyads_m6	R	8	17	CAAATGTACA	7.6
hg38_ct_MyTrack_6202_17	site	dyads_m6	D	-327	-318	GAAATGTAGT	7.7
hg38_ct_MyTrack_6202_18	site	dyads_m6	D	-145	-136	TAAATGTAAT	8.3
hg38_ct_MyTrack_6202_20	site	dyads_m6	D	-315	-306	AAAATGTATT	8.3
hg38_ct_MyTrack_6202_22	site	dyads_m6	D	209	218	TGAATGTATT	8.1
hg38_ct_MyTrack_6202_27	site	dyads_m6	R	-92	-83	TTAATGTACA	7.8
hg38_ct_MyTrack_6202_27	site	dyads_m6	D	345	354	AGAATGTAAA	7.8
hg38_ct_MyTrack_6202_28	site	dyads_m6	D	-199	-190	TAAATGTACA	8.5
hg38_ct_MyTrack_6202_28	site	dyads_m6	R	-154	-145	ATAATGTATA	8.9
hg38_ct_MyTrack_6202_28	site	dyads_m6	D	-58	-49	AAAATGTATT	8.3
hg38_ct_MyTrack_6202_28	site	dyads_m6	R	22	31	TTAATGTATG	7.9
hg38_ct_MyTrack_6202_1	site	dyads_m6	D	-298	-289	AGAATGTAAT	7.8
hg38_ct_MyTrack_6202_1	site	dyads_m6	D	231	240	AAAATGTAAT	7.9
hg38_ct_MyTrack_6202_1	site	dyads_m6	D	298	307	AGAATGTATA	8.9
hg38_ct_MyTrack_6202_4	site	dyads_m6	R	-313	-304	TGAATGTAAG	7.5
hg38_ct_MyTrack_6202_7	site	dyads_m6	R	30	39	TAAATGTAGA	8.3
hg38_ct_MyTrack_6202_9	site	dyads_m6	R	36	45	GTAATGTATT	7.9
hg38_ct_MyTrack_6202_12	site	dyads_m6	R	-288	-279	CAAATGTATT	7.7
hg38_ct_MyTrack_6202_2	site	dyads_m6	D	303	312	TAAATGTATG	8.6
hg38_ct_MyTrack_6202_6	site	dyads_m6	D	194	203	AAAATGTAGT	7.9
hg38_ct_MyTrack_6202_7	site	dyads_m6	R	127	136	AAAATGTATG	8.3
hg38_ct_MyTrack_6202_7	site	dyads_m6	D	272	281	AAAATGTAAA	8.0
hg38_ct_MyTrack_6202_9	site	dyads_m6	R	334	343	GAAATGTAGT	7.7
hg38_ct_MyTrack_6202_10	site	dyads_m6	R	420	429	TAAACGTAAA	8.1
hg38_ct_MyTrack_6202_11	site	dyads_m6	R	-37	-28	TCAATGTATG	7.5
hg38_ct_MyTrack_6202_11	site	dyads_m6	R	450	459	TGAATGTATG	8.1
hg38_ct_MyTrack_6202_14	site	dyads_m6	R	331	340	TAAATGTATG	8.6
hg38_ct_MyTrack_6202_2	site	dyads_m6	R	-47	-38	TAAATGTAAA	8.3
hg38_ct_MyTrack_6202_2	site	dyads_m6	D	54	63	ATAACGTATG	7.9
hg38_ct_MyTrack_6202_2	site	dyads_m6	D	76	85	TAAATGTACA	8.5
hg38_ct_MyTrack_6202_2	site	dyads_m6	D	91	100	TAAATGTAAA	8.3
hg38_ct_MyTrack_6202_2	site	dyads_m6	D	125	134	TAAATGTAAA	8.3
hg38_ct_MyTrack_6202_3	site	dyads_m6	R	22	31	AGAATGTATT	8.2
hg38_ct_MyTrack_6202_4	site	dyads_m6	D	-96	-87	TAAATGTAAA	8.3
hg38_ct_MyTrack_6202_4	site	dyads_m6	D	423	432	TAAATGTATG	8.6
hg38_ct_MyTrack_6202_1	site	dyads_m6	D	-128	-119	TAAATGTAAG	8.1
hg38_ct_MyTrack_6202_2	site	dyads_m6	R	31	40	TAAATGTAAG	8.1
hg38_ct_MyTrack_6202_2	site	dyads_m6	D	435	444	GAAATGTATA	8.8
hg38_ct_MyTrack_6202_3	site	dyads_m6	D	271	280	AAAATGTAAA	8.0
hg38_ct_MyTrack_6202_5	site	dyads_m6	R	164	173	TAAATGTATT	8.7
hg38_ct_MyTrack_6202_5	site	dyads_m6	R	170	179	TAAATGTAAA	8.3
hg38_ct_MyTrack_6202_7	site	dyads_m6	D	185	194	AAAATGTATA	9.0
hg38_ct_MyTrack_6202_0	site	dyads_m6	R	-303	-294	CTAATGTATA	8.1
hg38_ct_MyTrack_6202_1	site	dyads_m6	R	48	57	GGAATGTACA	7.6
hg38_ct_MyTrack_6202_1	site	dyads_m6	R	436	445	AAAATGTATT	8.3
hg38_ct_MyTrack_6202_3	site	dyads_m6	D	-227	-218	AAAATGTATT	8.3
hg38_ct_MyTrack_6202_3	site	dyads_m6	D	40	49	AAAATGTATG	8.3
hg38_ct_MyTrack_6202_3	site	dyads_m6	R	296	305	ACAATGTATG	7.8
hg38_ct_MyTrack_6202_5	site	dyads_m6	D	-410	-401	AAAACGTAAA	7.7
hg38_ct_MyTrack_6202_5	site	dyads_m6	R	-20	-11	TTAATGTATA	8.6
hg38_ct_MyTrack_6202_5	site	dyads_m6	R	223	232	TAAATGTACC	7.6
hg38_ct_MyTrack_6202_0	site	dyads_m6	D	13	22	AGAACGTAAA	7.6
hg38_ct_MyTrack_6202_3	site	dyads_m6	D	-431	-422	TGAATGTATG	8.1
hg38_ct_MyTrack_6202_4	site	dyads_m6	D	-110	-101	AAAATGTATG	8.3
hg38_ct_MyTrack_6202_5	site	dyads_m6	R	-395	-386	AAAATGTAGA	8.0
hg38_ct_MyTrack_6202_6	site	dyads_m6	D	-291	-282	AAAATGTATT	8.3
hg38_ct_MyTrack_6202_7	site	dyads_m6	D	293	302	ATAATGTAAT	7.9
hg38_ct_MyTrack_6202_7	site	dyads_m6	D	412	421	CAAATGTATT	7.7
hg38_ct_MyTrack_6202_8	site	dyads_m6	R	-189	-180	CGAATGTATA	10.0
hg38_ct_MyTrack_6202_8	site	dyads_m6	D	38	47	TAAATGTATG	8.6
hg38_ct_MyTrack_6202_0	site	dyads_m6	D	-150	-141	AAAATGTAAT	7.9
hg38_ct_MyTrack_6202_0	site	dyads_m6	D	-83	-74	AGAATGTATA	8.9
hg38_ct_MyTrack_6202_2	site	dyads_m6	D	-407	-398	GAAATGTATA	8.8
hg38_ct_MyTrack_6202_2	site	dyads_m6	D	230	239	GGAATGTATT	7.8
hg38_ct_MyTrack_6202_3	site	dyads_m6	D	-351	-342	ATAATGTACA	8.1
hg38_ct_MyTrack_6202_3	site	dyads_m6	R	-188	-179	AAAATGTATA	9.0
hg38_ct_MyTrack_6202_4	site	dyads_m6	R	-260	-251	TTAATGTAAT	7.6
hg38_ct_MyTrack_6202_4	site	dyads_m6	R	-214	-205	TGAATGTATC	7.6
hg38_ct_MyTrack_6202_7	site	dyads_m6	R	-356	-347	AAAATGTATC	7.8
hg38_ct_MyTrack_6202_7	site	dyads_m6	D	78	87	TAAATGTAAT	8.3
hg38_ct_MyTrack_6202_9	site	dyads_m6	R	-239	-230	TGAATGTATA	8.8
hg38_ct_MyTrack_6202_9	site	dyads_m6	D	192	201	GTAATGTACA	7.8
hg38_ct_MyTrack_6202_9	site	dyads_m6	R	332	341	AGAACGTAAA	7.6
hg38_ct_MyTrack_6202_11	site	dyads_m6	R	160	169	GGAATGTATT	7.8
hg38_ct_MyTrack_6202_14	site	dyads_m6	D	-225	-216	GTAATGTATA	8.6
hg38_ct_MyTrack_6202_14	site	dyads_m6	R	26	35	TAAATGTAGA	8.3
hg38_ct_MyTrack_6202_14	site	dyads_m6	D	386	395	TTAATGTAAT	7.6
hg38_ct_MyTrack_6202_14	site	dyads_m6	D	466	475	AGAATGTATC	7.7
hg38_ct_MyTrack_6202_1	site	dyads_m6	D	66	75	TAAATGTACT	8.3
hg38_ct_MyTrack_6202_3	site	dyads_m6	R	209	218	AAAATGTAAA	8.0
hg38_ct_MyTrack_6202_3	site	dyads_m6	R	344	353	AAAATGTATT	8.3
hg38_ct_MyTrack_6202_3	site	dyads_m6	D	384	393	TAAATGTACT	8.3
hg38_ct_MyTrack_6202_4	site	dyads_m6	D	-344	-335	GAAATGTAGA	7.8
hg38_ct_MyTrack_6202_5	site	dyads_m6	D	452	461	AGAATGTATT	8.2
hg38_ct_MyTrack_6202_6	site	dyads_m6	D	165	174	TAAATGTATT	8.7
hg38_ct_MyTrack_6202_7	site	dyads_m6	D	103	112	TAAATGTACA	8.5
hg38_ct_MyTrack_6202_1	site	dyads_m6	R	-428	-419	CTAATGTATA	8.1
hg38_ct_MyTrack_6202_1	site	dyads_m6	R	-347	-338	TAAATGTATT	8.7
hg38_ct_MyTrack_6202_1	site	dyads_m6	D	-324	-315	AAAATGTATA	9.0
hg38_ct_MyTrack_6202_1	site	dyads_m6	D	-151	-142	AGAACGTATT	7.9
hg38_ct_MyTrack_6202_4	site	dyads_m6	R	-458	-449	AGAATGTAAA	7.8
hg38_ct_MyTrack_6202_4	site	dyads_m6	D	272	281	TAAATGTATA	9.3
hg38_ct_MyTrack_6202_4	site	dyads_m6	R	390	399	TGAATGTAAA	7.8
hg38_ct_MyTrack_6202_5	site	dyads_m6	D	-481	-472	AGAACGTAAT	7.6
hg38_ct_MyTrack_6202_2	site	dyads_m6	D	-229	-220	TTAATGTAAA	7.6
hg38_ct_MyTrack_6202_3	site	dyads_m6	R	401	410	TTAATGTACG	9.2
hg38_ct_MyTrack_6202_5	site	dyads_m6	R	-32	-23	AGAATGTAAT	7.8
hg38_ct_MyTrack_6202_6	site	dyads_m6	D	8	17	AGAATGTAGA	7.9
hg38_ct_MyTrack_6202_0	site	dyads_m6	D	-99	-90	AAAATGTATA	9.0
hg38_ct_MyTrack_6202_1	site	dyads_m6	D	170	179	CAAATGTATA	8.4
hg38_ct_MyTrack_6202_2	site	dyads_m6	D	-253	-244	TAAATGTATA	9.3
hg38_ct_MyTrack_6202_2	site	dyads_m6	R	187	196	TAAATGTACA	8.5
hg38_ct_MyTrack_6202_2	site	dyads_m6	D	195	204	TAAATGTATT	8.7
hg38_ct_MyTrack_6202_2	site	dyads_m6	D	335	344	ATAATGTATA	8.9
hg38_ct_MyTrack_6202_6	site	dyads_m6	R	-147	-138	AAAATGTAGA	8.0
hg38_ct_MyTrack_6202_8	site	dyads_m6	D	-312	-303	AAAACGTATT	8.0
hg38_ct_MyTrack_6202_9	site	dyads_m6	R	431	440	GAAATGTACT	7.7
hg38_ct_MyTrack_6202_1	site	dyads_m6	D	-150	-141	AAAATGTAAT	7.9
hg38_ct_MyTrack_6202_1	site	dyads_m6	D	-83	-74	AGAATGTATA	8.9
hg38_ct_MyTrack_6202_5	site	dyads_m6	R	456	465	GAAACGTATG	7.8
hg38_ct_MyTrack_6202_1	site	dyads_m6	R	168	177	GAAATGTATT	8.1
hg38_ct_MyTrack_6202_0	site	dyads_m6	D	-248	-239	TAAATGTAAT	8.3
hg38_ct_MyTrack_6202_0	site	dyads_m6	D	-414	-405	TAAATGTATG	8.6
hg38_ct_MyTrack_6202_0	site	dyads_m6	R	220	229	TTAATGTAAA	7.6
hg38_ct_MyTrack_6202_0	site	dyads_m6	R	456	465	GAAACGTATG	7.8
hg38_ct_MyTrack_6202_0	site	dyads_m6	R	456	465	GAAACGTATG	7.8
hg38_ct_MyTrack_6202_0	site	dyads_m6	R	456	465	GAAACGTATG	7.8
hg38_ct_MyTrack_6202_0	site	dyads_m6	R	456	465	GAAACGTATG	7.8
;
; Matrices
;	matrix	name    	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_m6	10	4	0	-30.200	8.500	38.700	a:0.296 c:0.204 g:0.202 t:0.298 
; Number of sequences scanned	226
; Sum of sequence lengths	226000
; N residues           	0
; Matches per matrix
;	matrix	name    	matches	scored
;	1	dyads_m6       	184	0
;		TOTAL          	184	0
; Host name	rsat
; Job started	2026-02-26.200837
; Job done	2026-02-26.200837
; Seconds	0.24
;	user	0.24
;	system	0.03
;	cuser	0.11
;	csystem	0.02
