; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/dyads_m2/peak-motifs_dyads_m2_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29599
;		c	0.20450
;		g	0.20176
;		t	0.29775
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
hg38_ct_MyTrack_6202_0	site	dyads_m2	R	-238	-227	ATAGAAATAAAA	9.8
hg38_ct_MyTrack_6202_1	site	dyads_m2	R	-238	-227	ATAGAAATAAAA	9.8
hg38_ct_MyTrack_6202_4	site	dyads_m2	D	-151	-140	AAAGAAATAAGA	9.3
hg38_ct_MyTrack_6202_9	site	dyads_m2	D	283	294	TAAAAAATAAAA	7.6
hg38_ct_MyTrack_6202_0	site	dyads_m2	R	-388	-377	ACAGAAATAATT	9.2
hg38_ct_MyTrack_6202_0	site	dyads_m2	D	-348	-337	ACAGAAATACAT	7.5
hg38_ct_MyTrack_6202_0	site	dyads_m2	R	-91	-80	AAAAAAATAAAA	7.6
hg38_ct_MyTrack_6202_1	site	dyads_m2	D	-459	-448	ATAAAAATAAAA	7.7
hg38_ct_MyTrack_6202_1	site	dyads_m2	D	-428	-417	AAAAAAATAATA	7.7
hg38_ct_MyTrack_6202_1	site	dyads_m2	D	-1	10	AAAGAAATACAA	7.5
hg38_ct_MyTrack_6202_1	site	dyads_m2	D	331	342	ATAAAAATAATA	7.8
hg38_ct_MyTrack_6202_7	site	dyads_m2	D	-290	-279	AAATAAATAAAT	8.0
hg38_ct_MyTrack_6202_7	site	dyads_m2	D	-131	-120	AAAGAAATAAAA	9.7
hg38_ct_MyTrack_6202_7	site	dyads_m2	D	-79	-68	TAATAAATAAAA	7.9
hg38_ct_MyTrack_6202_8	site	dyads_m2	R	446	457	CTAGAAATAAGA	8.2
hg38_ct_MyTrack_6202_12	site	dyads_m2	D	438	449	TAAGAAATAAGG	8.5
hg38_ct_MyTrack_6202_14	site	dyads_m2	D	-32	-21	TTAGAAATAAGT	8.7
hg38_ct_MyTrack_6202_14	site	dyads_m2	R	100	111	AAAGAAATAAGT	9.2
hg38_ct_MyTrack_6202_0	site	dyads_m2	D	-66	-55	AGAGAAATAAAC	9.4
hg38_ct_MyTrack_6202_0	site	dyads_m2	D	-47	-36	TAAGAAATAAAC	9.6
hg38_ct_MyTrack_6202_2	site	dyads_m2	D	159	170	AAAGAAATAATG	8.8
hg38_ct_MyTrack_6202_5	site	dyads_m2	R	483	494	GCAGAAATAAAA	9.1
hg38_ct_MyTrack_6202_8	site	dyads_m2	R	-435	-424	AAAAAAATAATA	7.7
hg38_ct_MyTrack_6202_6	site	dyads_m2	R	-77	-66	ATATAAATAATA	8.1
hg38_ct_MyTrack_6202_6	site	dyads_m2	D	382	393	AAATAAATAAAA	7.9
hg38_ct_MyTrack_6202_8	site	dyads_m2	D	-247	-236	AAAGAAATAAAA	9.7
hg38_ct_MyTrack_6202_8	site	dyads_m2	R	181	192	AAATAAATAAAT	8.0
hg38_ct_MyTrack_6202_9	site	dyads_m2	R	348	359	GAAGAAATAAGT	9.0
hg38_ct_MyTrack_6202_10	site	dyads_m2	D	121	132	GTAGAAATACCG	7.6
hg38_ct_MyTrack_6202_11	site	dyads_m2	D	-475	-464	ATAAAAATAAAA	7.7
hg38_ct_MyTrack_6202_12	site	dyads_m2	R	-338	-327	AGAGAAATAATA	9.7
hg38_ct_MyTrack_6202_14	site	dyads_m2	R	144	155	GTAGAAATAACA	9.1
hg38_ct_MyTrack_6202_14	site	dyads_m2	R	398	409	TAAGAAATATAT	7.8
hg38_ct_MyTrack_6202_15	site	dyads_m2	D	-241	-230	TCAGAAATAATG	8.1
hg38_ct_MyTrack_6202_18	site	dyads_m2	D	163	174	AAAGAAATAAAG	9.1
hg38_ct_MyTrack_6202_20	site	dyads_m2	D	406	417	ATATAAATAAGT	7.5
hg38_ct_MyTrack_6202_22	site	dyads_m2	D	107	118	AAAGAAATAAGT	9.2
hg38_ct_MyTrack_6202_22	site	dyads_m2	R	165	176	TAAGAAATATAA	7.7
hg38_ct_MyTrack_6202_23	site	dyads_m2	D	-307	-296	ATATAAATAAAA	8.0
hg38_ct_MyTrack_6202_28	site	dyads_m2	D	42	53	AGAGAAATAATT	9.1
hg38_ct_MyTrack_6202_0	site	dyads_m2	R	-53	-42	ACCGAAATAAAT	7.7
hg38_ct_MyTrack_6202_1	site	dyads_m2	R	-238	-227	ATAGAAATAAAA	9.8
hg38_ct_MyTrack_6202_6	site	dyads_m2	D	211	222	CAAGAAATAATC	8.2
hg38_ct_MyTrack_6202_6	site	dyads_m2	R	385	396	TGAGAAATAAAT	9.2
hg38_ct_MyTrack_6202_11	site	dyads_m2	D	-482	-471	TAAGAAATAAAT	9.8
hg38_ct_MyTrack_6202_12	site	dyads_m2	R	105	116	ATAAAAATAATA	7.8
hg38_ct_MyTrack_6202_1	site	dyads_m2	R	112	123	AGAGAAATAAGA	9.1
hg38_ct_MyTrack_6202_2	site	dyads_m2	R	206	217	TAAGAAATAAAT	9.8
hg38_ct_MyTrack_6202_3	site	dyads_m2	D	-114	-103	GAAGAAATAAAT	9.5
hg38_ct_MyTrack_6202_4	site	dyads_m2	R	-232	-221	TAAGAAATAAAA	9.7
hg38_ct_MyTrack_6202_5	site	dyads_m2	D	430	441	ACAGAAATAATA	9.8
hg38_ct_MyTrack_6202_6	site	dyads_m2	D	-32	-21	GTAGAAATAATG	8.6
hg38_ct_MyTrack_6202_7	site	dyads_m2	R	-223	-212	ACAAAAATAAAT	7.6
hg38_ct_MyTrack_6202_7	site	dyads_m2	R	185	196	AAAGAAATACAT	7.6
hg38_ct_MyTrack_6202_1	site	dyads_m2	D	-197	-186	AAATAAATAAAT	8.0
hg38_ct_MyTrack_6202_1	site	dyads_m2	D	-193	-182	AAATAAATAAAT	8.0
hg38_ct_MyTrack_6202_1	site	dyads_m2	D	-189	-178	AAATAAATAAAA	7.9
hg38_ct_MyTrack_6202_1	site	dyads_m2	R	401	412	AAATAAATAATA	8.0
hg38_ct_MyTrack_6202_1	site	dyads_m2	R	405	416	AAATAAATAAAT	8.0
hg38_ct_MyTrack_6202_2	site	dyads_m2	D	115	126	ATATAAATAATA	8.1
hg38_ct_MyTrack_6202_2	site	dyads_m2	D	-170	-159	CCAGAAATAAAT	8.4
hg38_ct_MyTrack_6202_2	site	dyads_m2	D	321	332	ACAAAAATAAAA	7.5
hg38_ct_MyTrack_6202_4	site	dyads_m2	R	310	321	TCAGAAATAAAC	9.0
hg38_ct_MyTrack_6202_7	site	dyads_m2	D	55	66	TTAGAAATAAAT	9.2
hg38_ct_MyTrack_6202_5	site	dyads_m2	R	-379	-368	ACAAAAATAAAA	7.5
hg38_ct_MyTrack_6202_2	site	dyads_m2	R	407	418	ATAAAAATAAAT	7.7
hg38_ct_MyTrack_6202_6	site	dyads_m2	D	-403	-392	AAATAAATAAAA	7.9
hg38_ct_MyTrack_6202_6	site	dyads_m2	R	328	339	TAAGAAATAAAT	9.8
hg38_ct_MyTrack_6202_8	site	dyads_m2	D	31	42	GAATAAATAAAT	7.8
hg38_ct_MyTrack_6202_1	site	dyads_m2	R	-83	-72	AAAGAAATAAAT	9.7
hg38_ct_MyTrack_6202_2	site	dyads_m2	D	-290	-279	ACATAAATAAAC	7.8
hg38_ct_MyTrack_6202_2	site	dyads_m2	R	-201	-190	TGAGAAATAATT	8.6
hg38_ct_MyTrack_6202_3	site	dyads_m2	D	478	489	ACAAAAATAAAT	7.6
hg38_ct_MyTrack_6202_3	site	dyads_m2	D	482	493	AAATAAATAAAT	8.0
hg38_ct_MyTrack_6202_3	site	dyads_m2	D	486	497	AAATAAATAAAA	7.9
hg38_ct_MyTrack_6202_4	site	dyads_m2	R	17	28	TAAAAAATAAAT	7.6
hg38_ct_MyTrack_6202_5	site	dyads_m2	R	-206	-195	GGAGAAATAAGG	8.0
hg38_ct_MyTrack_6202_7	site	dyads_m2	R	-314	-303	AGAGAAATAAAA	9.6
hg38_ct_MyTrack_6202_9	site	dyads_m2	R	-321	-310	AAATAAATAAAA	7.9
hg38_ct_MyTrack_6202_9	site	dyads_m2	R	-317	-306	CAAGAAATAAAT	8.8
hg38_ct_MyTrack_6202_9	site	dyads_m2	R	-22	-11	AGAGAAATAAGC	8.7
hg38_ct_MyTrack_6202_9	site	dyads_m2	R	271	282	ATAGAAATATCG	7.8
hg38_ct_MyTrack_6202_14	site	dyads_m2	D	-356	-345	AGAGAAATAAAT	9.6
hg38_ct_MyTrack_6202_14	site	dyads_m2	R	-257	-246	AAAAAAATAAAA	7.6
hg38_ct_MyTrack_6202_1	site	dyads_m2	R	344	355	GCAGAAATAAAA	9.1
hg38_ct_MyTrack_6202_6	site	dyads_m2	R	-467	-456	ACAGAAATAATG	8.7
hg38_ct_MyTrack_6202_7	site	dyads_m2	D	96	107	AAATAAATAAAT	8.0
hg38_ct_MyTrack_6202_7	site	dyads_m2	D	377	388	TAAAAAATAAAA	7.6
hg38_ct_MyTrack_6202_0	site	dyads_m2	D	74	85	ATATAAATAAGA	7.6
hg38_ct_MyTrack_6202_1	site	dyads_m2	R	-34	-23	AGAGAAATAATA	9.7
hg38_ct_MyTrack_6202_2	site	dyads_m2	R	305	316	AAATAAATAAAT	8.0
hg38_ct_MyTrack_6202_2	site	dyads_m2	R	309	320	AAATAAATAAAT	8.0
hg38_ct_MyTrack_6202_2	site	dyads_m2	R	313	324	AAATAAATAAAT	8.0
hg38_ct_MyTrack_6202_3	site	dyads_m2	R	465	476	TAAAAAATAATA	7.7
hg38_ct_MyTrack_6202_7	site	dyads_m2	D	-247	-236	AAATAAATAAGA	7.5
hg38_ct_MyTrack_6202_7	site	dyads_m2	R	348	359	TAAAAAATAAAA	7.6
hg38_ct_MyTrack_6202_9	site	dyads_m2	D	24	35	TCAGAAATAACG	9.7
hg38_ct_MyTrack_6202_6	site	dyads_m2	R	304	315	CGAGAAATACAC	8.0
hg38_ct_MyTrack_6202_1	site	dyads_m2	D	-41	-30	ATAAAAATAAAA	7.7
hg38_ct_MyTrack_6202_2	site	dyads_m2	R	-271	-260	AAATAAATAATA	8.0
hg38_ct_MyTrack_6202_2	site	dyads_m2	D	-103	-92	TGAGAAATAAGG	7.9
hg38_ct_MyTrack_6202_7	site	dyads_m2	R	212	223	AAAGAAATAAAG	9.1
hg38_ct_MyTrack_6202_9	site	dyads_m2	D	185	196	AAAAAAATAAAA	7.6
hg38_ct_MyTrack_6202_9	site	dyads_m2	R	264	275	ACAGAAATATAT	7.7
hg38_ct_MyTrack_6202_10	site	dyads_m2	D	472	483	AAAGAAATAACT	9.1
hg38_ct_MyTrack_6202_1	site	dyads_m2	R	-252	-241	AAAGAAATAATG	8.8
hg38_ct_MyTrack_6202_1	site	dyads_m2	R	-82	-71	ATATAAATAAGA	7.6
hg38_ct_MyTrack_6202_2	site	dyads_m2	D	159	170	GCAGAAATAAGG	7.9
hg38_ct_MyTrack_6202_3	site	dyads_m2	R	-192	-181	AGAGAAATAAAA	9.6
;
; Matrices
;	matrix	name    	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	dyads_m2	12	4	0	-19.700	10.300	30.000	a:0.296 c:0.204 g:0.202 t:0.298 
; Number of sequences scanned	226
; Sum of sequence lengths	226000
; N residues           	0
; Matches per matrix
;	matrix	name    	matches	scored
;	1	dyads_m2       	109	0
;		TOTAL          	109	0
; Host name	rsat
; Job started	2026-02-26.200833
; Job done	2026-02-26.200833
; Seconds	0.21
;	user	0.21
;	system	0.01
;	cuser	0.11
;	csystem	0.02
