; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4.tab -2str -maxfl 1 -subst 1 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 10 -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/oligos_7nt_mkv4/peak-motifs_oligos-2str-noov_7nt_mkv4_pssm.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	1
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	4
;

; assembly # 1	seed: ccactgc	2 assembled patterns	length 8
; alignt	 rev_cpl	score
ccactgc.	.gcagtgg	1.40
.cactgca	tgcagtg.	0.20
ccactgca	tgcagtgg	1.40	best consensus

; assembly # 2	seed: aatgtat	1 assembled patterns	length 7
;alignt	rev_cpl	score
aatgtat	atacatt	0.21
aatgtat	atacatt	0.21	best consensus

; assembly # 3	seed: gagtgca	1 assembled patterns	length 7
;alignt	rev_cpl	score
gagtgca	tgcactc	0.03
gagtgca	tgcactc	0.03	best consensus
; Host name	rsat
; Job started	2026-02-26.200645
; Job done	2026-02-26.200645
; Seconds	0.11
;	user	0.11
;	system	0.02
;	cuser	0
;	csystem	0
