; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_6nt_mkv3_m8/peak-motifs_oligos_6nt_mkv3_m8.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_6nt_mkv3_m8/peak-motifs_oligos_6nt_mkv3_m8_sites.tab
; Quick counting mode           
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_6nt_mkv3_m8/peak-motifs_oligos_6nt_mkv3_m8.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_6nt_mkv3_m8/peak-motifs_oligos_6nt_mkv3_m8_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29599
;		c	0.20450
;		g	0.20176
;		t	0.29775
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m8	D	214	223	ATATTCAATT	7.6
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m8	D	214	223	ATATTCAATT	7.6
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m8	R	-126	-117	ACATTCAAGA	7.8
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m8	D	-242	-233	ATATTCAACT	7.8
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m8	R	11	20	GCATTCAAGT	7.5
hg38_ct_MyTrack_6202_12	site	oligos_6nt_mkv3_m8	D	306	315	TAATTCAACA	7.7
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m8	D	182	191	CTATTCAATA	7.7
hg38_ct_MyTrack_6202_14	site	oligos_6nt_mkv3_m8	D	-100	-91	ATATTCAAAA	7.6
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m8	D	-150	-141	ACATTCAAGA	7.8
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m8	R	317	326	GTATTCAACT	7.9
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m8	R	476	485	ATATTCAATT	7.6
hg38_ct_MyTrack_6202_10	site	oligos_6nt_mkv3_m8	D	374	383	TTATTCAACT	7.5
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m8	D	-25	-16	ATATTCAAAA	7.6
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m8	R	-270	-261	TAATTCAACA	7.7
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m8	D	-483	-474	TAATTCAAGA	7.6
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m8	R	439	448	TCATTCAATA	7.9
hg38_ct_MyTrack_6202_11	site	oligos_6nt_mkv3_m8	D	-444	-435	GCATTCAATA	8.0
hg38_ct_MyTrack_6202_11	site	oligos_6nt_mkv3_m8	D	471	480	GGATTCAATA	7.7
hg38_ct_MyTrack_6202_13	site	oligos_6nt_mkv3_m8	R	489	498	ACATTCAAGA	7.8
hg38_ct_MyTrack_6202_15	site	oligos_6nt_mkv3_m8	D	-77	-68	TAATTCAAGA	7.6
hg38_ct_MyTrack_6202_16	site	oligos_6nt_mkv3_m8	R	-344	-335	TTATTCAAGT	7.5
hg38_ct_MyTrack_6202_16	site	oligos_6nt_mkv3_m8	D	-228	-219	TAATTCAATA	8.0
hg38_ct_MyTrack_6202_18	site	oligos_6nt_mkv3_m8	D	176	185	GTATTCAATT	7.7
hg38_ct_MyTrack_6202_18	site	oligos_6nt_mkv3_m8	D	323	332	GTATTCAATT	7.7
hg38_ct_MyTrack_6202_18	site	oligos_6nt_mkv3_m8	R	423	432	CTATTCAATA	7.7
hg38_ct_MyTrack_6202_20	site	oligos_6nt_mkv3_m8	R	-438	-429	TTATTCAACT	7.5
hg38_ct_MyTrack_6202_20	site	oligos_6nt_mkv3_m8	D	364	373	TTATTCAACT	7.5
hg38_ct_MyTrack_6202_23	site	oligos_6nt_mkv3_m8	D	270	279	ACATTCAACA	7.9
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m8	D	-322	-313	GCATTCAAGA	7.7
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m8	D	-28	-19	ATATTCAAGT	7.8
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m8	D	214	223	ATATTCAATT	7.6
hg38_ct_MyTrack_6202_12	site	oligos_6nt_mkv3_m8	R	138	147	GAATTCAACA	7.6
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m8	R	-497	-488	TAATTCAAGA	7.6
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m8	R	389	398	TAATTCAACA	7.7
hg38_ct_MyTrack_6202_11	site	oligos_6nt_mkv3_m8	R	-424	-415	TTATTCAATA	8.0
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m8	R	133	142	GTATTCAATT	7.7
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m8	D	214	223	TTATTCAACA	7.8
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m8	R	-129	-120	ATATTCAAGA	8.0
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m8	R	-434	-425	ACATTCAATA	8.1
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m8	D	-76	-67	TAATTCAATA	8.0
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m8	R	166	175	TTATTCAAGA	7.7
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m8	D	-287	-278	TGATTCAATA	7.6
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m8	D	178	187	TTATTCAATA	8.0
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m8	R	-233	-224	ATATTCAATA	8.3
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m8	D	-167	-158	ATATTCAATT	7.6
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m8	R	-321	-312	GAATTCAATA	7.8
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m8	R	125	134	ATATTCAACT	7.8
hg38_ct_MyTrack_6202_14	site	oligos_6nt_mkv3_m8	R	96	105	ATATTCAATT	7.6
hg38_ct_MyTrack_6202_14	site	oligos_6nt_mkv3_m8	R	362	371	TGATTCAATA	7.6
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m8	D	338	347	TAATTCAATA	8.0
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m8	D	-442	-433	GTATTCAACT	7.9
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m8	D	238	247	GTATTCAACT	7.9
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m8	R	-486	-477	ATATTCAACA	8.1
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m8	R	-268	-259	ATATTCAATT	7.6
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m8	R	-229	-220	TAATTCAACA	7.7
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m8	D	-267	-258	TCATTCAATA	7.9
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m8	D	139	148	TCATTCAAGA	7.6
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m8	D	-129	-120	ATATTCAATT	7.6
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m8	R	-290	-281	AAATTCAATA	7.6
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m8	R	114	123	GTATTCAAAT	7.7
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m8	D	-167	-158	ATATTCAATT	7.6
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m8	R	261	270	TCATTCAATA	7.9
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m8	R	-275	-266	ATATTCAACA	8.1
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv3_m8	10	4	0	-34.400	8.300	42.700	a:0.296 c:0.204 g:0.202 t:0.298 
; Number of sequences scanned	226
; Sum of sequence lengths	226000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv3_m8	63	0
;		TOTAL          	63	0
; Host name	rsat
; Job started	2026-02-26.200822
; Job done	2026-02-26.200822
; Seconds	0.24
;	user	0.24
;	system	0.01
;	cuser	0.12
;	csystem	0.01
