; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_6nt_mkv3_m10/peak-motifs_oligos_6nt_mkv3_m10.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_6nt_mkv3_m10/peak-motifs_oligos_6nt_mkv3_m10_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_6nt_mkv3_m10/peak-motifs_oligos_6nt_mkv3_m10.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_6nt_mkv3_m10/peak-motifs_oligos_6nt_mkv3_m10_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29599
;		c	0.20450
;		g	0.20176
;		t	0.29775
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m10	R	-340	-331	AAAAAGAAAT	7.8
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m10	R	-68	-59	AAAAAGAATA	7.9
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m10	R	354	363	AAAAAGAAAG	7.6
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m10	D	469	478	AAAAAGAATA	7.9
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m10	D	236	245	TAAAAGAAAC	7.6
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m10	D	-373	-364	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m10	D	-60	-51	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m10	R	73	82	AAAAAGAACA	7.7
hg38_ct_MyTrack_6202_14	site	oligos_6nt_mkv3_m10	R	-436	-427	AAAAAGAAAC	7.8
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m10	D	-435	-426	GAAAAGAATA	7.6
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m10	R	-215	-206	ATAAAGAAAA	7.7
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m10	R	-149	-140	AAAAAGAATA	7.9
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m10	D	-9	0	AAAAAGAAAG	7.6
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m10	R	350	359	AAAAAGAAGA	7.7
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m10	R	-205	-196	GAAAAGAAAA	7.6
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m10	D	-249	-240	AAAAAGAAAT	7.8
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m10	R	-463	-454	GAAAAGAAAA	7.6
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m10	R	89	98	GAAAAGAAAC	7.5
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m10	D	-209	-200	AAAAAGAAAC	7.8
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m10	R	140	149	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m10	R	261	270	ACAAAGAAAT	7.5
hg38_ct_MyTrack_6202_10	site	oligos_6nt_mkv3_m10	R	102	111	AAAAAGAAAG	7.6
hg38_ct_MyTrack_6202_11	site	oligos_6nt_mkv3_m10	D	-391	-382	ATAAAGAAAT	7.7
hg38_ct_MyTrack_6202_20	site	oligos_6nt_mkv3_m10	D	-448	-439	AAAAAGAAGT	7.6
hg38_ct_MyTrack_6202_20	site	oligos_6nt_mkv3_m10	R	-376	-367	ACAAAGAAAA	7.5
hg38_ct_MyTrack_6202_27	site	oligos_6nt_mkv3_m10	R	-498	-489	AAAAAGAACA	7.7
hg38_ct_MyTrack_6202_28	site	oligos_6nt_mkv3_m10	D	-338	-329	AAAAAGAAAT	7.8
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m10	D	418	427	ATAAAGAAAA	7.7
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m10	D	-294	-285	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m10	D	-285	-276	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m10	D	49	58	AAAAAGAACA	7.7
hg38_ct_MyTrack_6202_11	site	oligos_6nt_mkv3_m10	R	-467	-458	ATAAAGAACA	7.6
hg38_ct_MyTrack_6202_11	site	oligos_6nt_mkv3_m10	D	302	311	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_11	site	oligos_6nt_mkv3_m10	D	311	320	AAAAAGAAAC	7.8
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m10	R	-186	-177	ATAAAGAAAT	7.7
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m10	D	-341	-332	ATAAAGAAAA	7.7
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m10	D	35	44	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m10	D	283	292	ACAAAGAAAT	7.5
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m10	R	-118	-109	ACAAAGAAAT	7.5
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m10	D	-397	-388	TAAAAGAAAT	7.6
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m10	R	189	198	ACAAAGAAAT	7.5
hg38_ct_MyTrack_6202_10	site	oligos_6nt_mkv3_m10	R	-295	-286	TAAAAGAAAA	7.6
hg38_ct_MyTrack_6202_11	site	oligos_6nt_mkv3_m10	R	238	247	AAAAAGAAAT	7.8
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m10	R	-494	-485	AAAAAGAATA	7.9
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m10	D	-58	-49	ATAAAGAAAA	7.7
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m10	R	454	463	ATAAAGAAAA	7.7
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m10	D	283	292	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m10	R	342	351	ATAAAGAAAT	7.7
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m10	D	-289	-280	AAAAAGAACA	7.7
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m10	R	-324	-315	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m10	D	-456	-447	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m10	D	-94	-85	ACAAAGAAAA	7.5
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m10	D	130	139	ATAAAGAAGA	7.6
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m10	R	399	408	AAAAAGAAGA	7.7
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m10	R	-384	-375	TAAAAGAATA	7.7
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m10	R	-370	-361	AAAAAGAACA	7.7
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m10	R	-355	-346	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m10	R	-347	-338	ACAAAGAAAA	7.5
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m10	D	471	480	GAAAAGAAAA	7.6
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m10	D	-479	-470	GAAAAGAAAA	7.6
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m10	D	-474	-465	GAAAAGAAAA	7.6
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m10	D	358	367	GAAAAGAAAC	7.5
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m10	R	-127	-118	AAAAAGAAAC	7.8
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m10	R	294	303	ATAAAGAAAT	7.7
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m10	R	99	108	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m10	R	284	293	GAAAAGAAAA	7.6
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m10	R	289	298	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m10	D	315	324	ATAAAGAAAA	7.7
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m10	R	-281	-272	AAAAAGAAAG	7.6
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m10	R	457	466	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m10	D	471	480	AAAAAGAAAT	7.8
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m10	R	401	410	TAAAAGAACA	7.5
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m10	R	-120	-111	AAAAAGAAAT	7.8
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m10	R	119	128	ATAAAGAACA	7.6
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m10	R	130	139	AAAAAGAAAC	7.8
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m10	R	-439	-430	AAAAAGAACA	7.7
hg38_ct_MyTrack_6202_13	site	oligos_6nt_mkv3_m10	R	215	224	AAAAAGAAAG	7.6
hg38_ct_MyTrack_6202_14	site	oligos_6nt_mkv3_m10	R	53	62	ACAAAGAAAA	7.5
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m10	D	-442	-433	GAAAAGAAAA	7.6
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m10	R	111	120	ATAAAGAACG	9.1
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m10	D	-381	-372	AAAAAGAACA	7.7
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m10	R	-416	-407	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m10	R	449	458	ACAAAGAAAT	7.5
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m10	R	-223	-214	TAAAAGAACA	7.5
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m10	R	-249	-240	ATAAAGAATA	7.8
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m10	D	-315	-306	TAAAAGAAAA	7.6
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m10	D	-309	-300	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m10	R	403	412	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m10	R	-47	-38	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m10	R	385	394	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m10	D	-161	-152	TAAAAGAAAT	7.6
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m10	D	399	408	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m10	R	451	460	AAAAAGAACA	7.7
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m10	R	-397	-388	TAAAAGAATA	7.7
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m10	D	-388	-379	ATAAAGAAGA	7.6
hg38_ct_MyTrack_6202_10	site	oligos_6nt_mkv3_m10	R	-43	-34	AAAAAGAACA	7.7
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m10	R	301	310	GAAAAGAAAC	7.5
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m10	R	306	315	GAAAAGAAAA	7.6
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m10	R	311	320	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m10	D	-98	-89	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m10	R	-455	-446	AAAAAGAAGT	7.6
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m10	D	358	367	ACAAAGAAAT	7.5
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m10	D	-445	-436	TAAAAGAATA	7.7
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m10	D	-473	-464	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m10	R	272	281	TAAAAGAACA	7.5
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m10	D	-389	-380	TAAAAGAAAA	7.6
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m10	R	375	384	AAAAAGAACA	7.7
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m10	D	-412	-403	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m10	R	300	309	AAAAAGAAAA	7.8
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m10	R	306	315	TAAAAGAAAA	7.6
;
; Matrices
;	matrix	name               	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv3_m10	10	4	0	-38.600	8.900	47.500	a:0.296 c:0.204 g:0.202 t:0.298 
; Number of sequences scanned	226
; Sum of sequence lengths	226000
; N residues           	0
; Matches per matrix
;	matrix	name               	matches	scored
;	1	oligos_6nt_mkv3_m10	110	0
;		TOTAL          	110	0
; Host name	rsat
; Job started	2026-02-26.200824
; Job done	2026-02-26.200824
; Seconds	0.22
;	user	0.22
;	system	0.02
;	cuser	0.11
;	csystem	0.03
