; pattern-assembly  -v 1 -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads.tab -2str -maxfl 1 -subst 0 -max_asmb_width 20 -toppat 100 -max_asmb_size 50 -max_asmb_width 20 -max_asmb_nb 10 -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm.asmb
; Input file	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads.tab
; Output file	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm.asmb
; Input score column           	8
; Output score column          	0
; Strand-insensitive assembly
; Max flanking bases           	1
; Max substitutions            	0
; Min matches                  	0
; Min weight                   	0
; Max assembly size            	50
; Max assembly width           	20
; Top number of patterns       	100
; Number of input patterns     	100
;

; assembly # 1	seed: aaaata	8 assembled patterns	length 10
;   alignt	   rev_cpl	score
ataaaa....	....ttttat	8.27
atanaat...	...attntat	5.53
.taaaat...	...atttta.	24.69
.taannnaat	attnnntta.	5.28
..aaaata..	..tatttt..	25.10
..aaannaat	attnnttt..	7.59
..aaantaa.	.ttanttt..	6.96
...aaataa.	.ttattt...	18.65
ataaaataat	attattttat	25.10	best consensus

; assembly # 2	seed: gaaata	3 assembled patterns	length 8
; alignt	 rev_cpl	score
agaaat..	..atttct	6.04
.gaaata.	.tatttc.	15.93
..aaataa	ttattt..	18.65
agaaataa	ttatttct	18.65	best consensus

; assembly # 3	seed: ccaggc	4 assembled patterns	length 9
;  alignt	  rev_cpl	score
acccag...	...ctgggt	7.10
.cccagg..	..cctggg.	13.33
..ccaggc.	.gcctgg..	15.32
...caggca	tgcctg...	5.89
acccaggca	tgcctgggt	15.32	best consensus

; assembly # 4	seed: cctccc	23 assembled patterns	length 18
;           alignt	           rev_cpl	score
cccnnnnnccc.......	.......gggnnnnnggg	5.88
.cctnnnnnccc......	......gggnnnnnagg.	10.27
.cctnnnnccc.......	.......gggnnnnagg.	5.53
..ctcnnnnncct.....	.....aggnnnnngag..	7.23
..ctcnnnnnnctc....	....gagnnnnnngag..	5.31
..ctcnnnnccc......	......gggnnnngag..	5.18
...tccnnnccc......	......gggnnngga...	9.42
...tcctcc.........	.........ggagga...	7.88
....cctccc........	........gggagg....	14.58
....cctnnnnnnccc..	..gggnnnnnnagg....	9.47
....cctnccc.......	.......gggnagg....	6.73
....cctnnnnctc....	....gagnnnnagg....	6.42
....cctnnnnntcc...	...ggannnnnagg....	5.73
.....ctcnnnnnccc..	..gggnnnnngag.....	14.49
.....ctcnnnctc....	....gagnnngag.....	13.52
.....ctcnncct.....	.....aggnngag.....	11.55
.....ctcnnnntcc...	...ggannnngag.....	9.24
......tccnnnnccc..	..gggnnnngga......	8.31
.......cccnnnccc..	..gggnnnggg.......	10.10
.......cccnnnnccc.	.gggnnnnggg.......	9.53
.......cccnnnnncca	tggnnnnnggg.......	5.31
........cccnnccc..	..gggnnggg........	12.05
........cccnnnncca	tggnnnnggg........	7.02
ccctcctccccctcccca	tggggagggggaggaggg	14.58	best consensus

; assembly # 5	seed: cccacc	1 assembled patterns	length 6
;alignt	rev_cpl	score
cccacc	ggtggg	14.53
cccacc	ggtggg	14.53	best consensus

; assembly # 6	seed: aatgta	1 assembled patterns	length 6
;alignt	rev_cpl	score
aatgta	tacatt	13.28
aatgta	tacatt	13.28	best consensus

; assembly # 7	seed: agagaa	1 assembled patterns	length 6
;alignt	rev_cpl	score
agagaa	ttctct	12.60
agagaa	ttctct	12.60	best consensus

; assembly # 8	seed: aacaaa	1 assembled patterns	length 6
;alignt	rev_cpl	score
aacaaa	tttgtt	12.30
aacaaa	tttgtt	12.30	best consensus

; assembly # 9	seed: cccagc	9 assembled patterns	length 12
;     alignt	     rev_cpl	score
cccnnnnnccc.	.gggnnnnnggg	5.88
.cccnnnnccc.	.gggnnnnggg.	9.53
.cccnnnnncca	tggnnnnnggg.	5.31
..cccnnnccc.	.gggnnnggg..	10.10
..cccnnnncca	tggnnnnggg..	7.02
...cccnnccc.	.gggnnggg...	12.05
...cccagc...	...gctggg...	11.74
...cccngcc..	..ggcnggg...	6.50
....ccagcc..	..ggctgg....	10.37
ccccccagccca	tgggctgggggg	12.05	best consensus

; assembly # 10	seed: taaata	10 assembled patterns	length 13
;      alignt	      rev_cpl	score
ataaaa.......	.......ttttat	8.27
atanaat......	......attntat	5.53
.taaaat......	......atttta.	24.69
..aaaata.....	.....tatttt..	25.10
..aaantaa....	....ttanttt..	6.96
...aaannaat..	..attnnttt...	7.59
....aatnnntaa	ttannnatt....	5.28
.....ataaat..	..atttat.....	11.00
......taaata.	.tattta......	11.45
.......aaataa	ttattt.......	18.65
ataaaataaataa	ttatttattttat	25.10	best consensus
; Maximal number of assemblies is reached (10). Remaining patterns: 52.
; Host name	rsat
; Job started	2026-02-26.200700
; Job done	2026-02-26.200707
; Seconds	7.61
;	user	7.61
;	system	0
;	cuser	0
;	csystem	0
