; matrix-scan  -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score -lth score 7.5 -origin center -offset 0 -return sites -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_sites.tab
; Quick counting mode           
; Input files
;	bg	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000.fasta
; Matrix files
;	matrix 1	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf
; Sequence format      	fasta
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_sites.tab
; Pseudo counts        	1
; Background model
;	Method        	file
;	Markov order  	1
;	Strand        	undef
;	Background pseudo-frequency	0.01
;	Residue probabilities
;		a	0.29599
;		c	0.20450
;		g	0.20176
;		t	0.29775
; Thresholds	lower	upper
;	score 	7.5  	NA
; Output columns
;	1	seq_id
;	2	ft_type
;	3	ft_name
;	4	strand
;	5	start
;	6	end
;	7	sequence
;	8	weight
#seq_id	ft_type	ft_name	strand	start	end	sequence	weight
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m5	D	298	308	AGAATGTATAA	8.9
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m5	D	298	308	AGAATGTATAA	8.9
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m5	R	144	154	GTAATGTATGA	8.6
hg38_ct_MyTrack_6202_10	site	oligos_6nt_mkv3_m5	R	-252	-242	TCAATGTATAT	8.9
hg38_ct_MyTrack_6202_10	site	oligos_6nt_mkv3_m5	R	18	28	TAAATATATAA	7.8
hg38_ct_MyTrack_6202_10	site	oligos_6nt_mkv3_m5	D	431	441	TGTATGTATAT	7.7
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m5	R	-347	-337	TTAATGTATGT	9.0
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m5	R	394	404	AAAATGTATAT	9.5
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m5	D	-105	-95	TAAATGTATTT	8.9
hg38_ct_MyTrack_6202_12	site	oligos_6nt_mkv3_m5	R	362	372	GAAATGTATTT	8.3
hg38_ct_MyTrack_6202_15	site	oligos_6nt_mkv3_m5	D	-306	-296	GGAATGTATGA	7.7
hg38_ct_MyTrack_6202_15	site	oligos_6nt_mkv3_m5	R	163	173	TAAATATATAT	8.2
hg38_ct_MyTrack_6202_17	site	oligos_6nt_mkv3_m5	R	-216	-206	AAAATGTATGT	8.6
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m5	R	412	422	TCAATGTATAT	8.9
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m5	D	225	235	AGAATGTATAT	9.3
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m5	D	349	359	CTAATGTATTT	8.2
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m5	D	456	466	GCAATGTATAA	8.2
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m5	R	408	418	TTAATGTATCA	8.0
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m5	D	-130	-120	TAAATGTATAT	10.0
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m5	R	-117	-107	TTAATGTATCT	8.1
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m5	R	387	397	TATATGTATAA	8.1
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m5	D	405	415	ATAATATATAA	8.0
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m5	D	430	440	AAAATATATAT	7.7
hg38_ct_MyTrack_6202_10	site	oligos_6nt_mkv3_m5	D	127	137	TTAATATATAC	7.8
hg38_ct_MyTrack_6202_10	site	oligos_6nt_mkv3_m5	R	132	142	TTAATGTATAT	10.0
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m5	D	-211	-201	AAAATGTATTC	8.2
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m5	D	-70	-60	TATATGTATAA	8.1
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m5	R	-453	-443	GTAATGTATGC	8.4
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m5	R	-137	-127	TGAATGTATTA	8.5
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m5	R	-458	-448	CGTATGTATAA	8.4
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m5	R	225	235	TATATGTATAT	8.5
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m5	D	-44	-34	TAAATGTAAAT	7.5
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m5	D	-123	-113	AAAATGTATTA	8.7
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m5	D	471	481	GTAATGTATTT	8.8
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m5	R	59	69	ACAATGTATAT	9.1
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m5	R	316	326	ATAATGTATTG	8.2
hg38_ct_MyTrack_6202_10	site	oligos_6nt_mkv3_m5	D	238	248	GTAATGTATTC	8.6
hg38_ct_MyTrack_6202_11	site	oligos_6nt_mkv3_m5	D	-306	-296	AATATGTATAA	7.7
hg38_ct_MyTrack_6202_12	site	oligos_6nt_mkv3_m5	R	-303	-293	GAAATGTATAT	9.4
hg38_ct_MyTrack_6202_12	site	oligos_6nt_mkv3_m5	D	-108	-98	AAAACGTATAT	8.1
hg38_ct_MyTrack_6202_13	site	oligos_6nt_mkv3_m5	D	-18	-8	TAAATGTATAT	10.0
hg38_ct_MyTrack_6202_13	site	oligos_6nt_mkv3_m5	D	396	406	TACATGTATAT	7.8
hg38_ct_MyTrack_6202_14	site	oligos_6nt_mkv3_m5	D	393	403	AAAATATATAT	7.7
hg38_ct_MyTrack_6202_14	site	oligos_6nt_mkv3_m5	R	396	406	GAAATATATAT	7.5
hg38_ct_MyTrack_6202_20	site	oligos_6nt_mkv3_m5	R	-470	-460	TATATGTATTA	7.7
hg38_ct_MyTrack_6202_20	site	oligos_6nt_mkv3_m5	R	-360	-350	ATAATATATAC	8.0
hg38_ct_MyTrack_6202_20	site	oligos_6nt_mkv3_m5	D	-315	-305	AAAATGTATTA	8.7
hg38_ct_MyTrack_6202_28	site	oligos_6nt_mkv3_m5	D	-199	-189	TAAATGTACAT	7.5
hg38_ct_MyTrack_6202_28	site	oligos_6nt_mkv3_m5	R	-155	-145	ATAATGTATAA	9.8
hg38_ct_MyTrack_6202_28	site	oligos_6nt_mkv3_m5	D	-58	-48	AAAATGTATTA	8.7
hg38_ct_MyTrack_6202_28	site	oligos_6nt_mkv3_m5	R	21	31	TTAATGTATGA	8.7
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m5	D	298	308	AGAATGTATAA	8.9
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m5	D	-168	-158	TAAATATATAC	7.9
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m5	R	35	45	GTAATGTATTT	8.8
hg38_ct_MyTrack_6202_12	site	oligos_6nt_mkv3_m5	R	-289	-279	CAAATGTATTA	8.1
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m5	D	303	313	TAAATGTATGA	8.7
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m5	R	126	136	AAAATGTATGC	8.0
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m5	D	425	435	ATAATATATTA	7.5
hg38_ct_MyTrack_6202_11	site	oligos_6nt_mkv3_m5	R	-38	-28	TCAATGTATGA	7.7
hg38_ct_MyTrack_6202_11	site	oligos_6nt_mkv3_m5	R	449	459	TGAATGTATGT	8.3
hg38_ct_MyTrack_6202_14	site	oligos_6nt_mkv3_m5	R	330	340	TAAATGTATGG	7.9
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m5	D	54	64	ATAACGTATGT	7.7
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m5	D	76	86	TAAATGTACAT	7.5
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m5	D	91	101	TAAATGTAAAT	7.5
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m5	D	125	135	TAAATGTAAAT	7.5
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m5	R	21	31	AGAATGTATTT	8.2
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m5	R	450	460	CTAATGTATGA	8.1
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m5	D	423	433	TAAATGTATGA	8.7
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m5	R	86	96	CTAATGTATTC	8.0
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m5	R	-415	-405	TATATGTATAT	8.5
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m5	D	-407	-397	ATAATATATAT	8.3
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m5	R	-392	-382	TAAATATATAT	8.2
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m5	R	-142	-132	AATATGTATAA	7.7
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m5	R	-160	-150	AATATGTATAT	8.0
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m5	R	-115	-105	CTAATGTATGT	8.3
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m5	D	435	445	GAAATGTATAT	9.4
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m5	R	163	173	TAAATGTATTT	8.9
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m5	R	169	179	TAAATGTAAAT	7.5
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m5	D	185	195	AAAATGTATAT	9.5
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m5	R	-478	-468	AATATGTATAC	7.7
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m5	R	-304	-294	CTAATGTATAT	9.3
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m5	R	435	445	AAAATGTATTT	8.5
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m5	D	-227	-217	AAAATGTATTA	8.7
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m5	D	40	50	AAAATGTATGA	8.3
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m5	R	295	305	ACAATGTATGC	7.5
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m5	R	-21	-11	TTAATGTATAC	9.7
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m5	D	-431	-421	TGAATGTATGC	7.8
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m5	D	-110	-100	AAAATGTATGC	8.0
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m5	D	-291	-281	AAAATGTATTT	8.5
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m5	D	293	303	ATAATGTAATA	7.6
hg38_ct_MyTrack_6202_7	site	oligos_6nt_mkv3_m5	D	412	422	CAAATGTATTC	7.6
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m5	R	-190	-180	CGAATGTATAT	10.4
hg38_ct_MyTrack_6202_8	site	oligos_6nt_mkv3_m5	D	38	48	TAAATGTATGG	7.9
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m5	D	-83	-73	AGAATGTATAA	8.9
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m5	D	-407	-397	GAAATGTATAG	8.3
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m5	R	-189	-179	AAAATGTATAA	9.2
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m5	D	176	186	TATATGTATAT	8.5
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m5	R	183	193	TGTATGTATAT	7.7
hg38_ct_MyTrack_6202_9	site	oligos_6nt_mkv3_m5	R	-240	-230	TGAATGTATAC	9.0
hg38_ct_MyTrack_6202_14	site	oligos_6nt_mkv3_m5	D	-225	-215	GTAATGTATAA	9.5
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m5	R	343	353	AAAATGTATTG	7.6
hg38_ct_MyTrack_6202_5	site	oligos_6nt_mkv3_m5	D	452	462	AGAATGTATTT	8.2
hg38_ct_MyTrack_6202_6	site	oligos_6nt_mkv3_m5	D	165	175	TAAATGTATTT	8.9
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m5	R	-429	-419	CTAATGTATAG	8.3
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m5	R	-348	-338	TAAATGTATTC	8.7
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m5	D	-324	-314	AAAATGTATAC	9.2
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m5	D	-152	-142	TATATGTATGT	7.5
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m5	D	-40	-30	CGAATATATTA	7.7
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m5	R	280	290	ATAATATATAT	8.3
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m5	D	104	114	ATAATATATAT	8.3
hg38_ct_MyTrack_6202_4	site	oligos_6nt_mkv3_m5	D	272	282	TAAATGTATAA	9.6
hg38_ct_MyTrack_6202_3	site	oligos_6nt_mkv3_m5	R	400	410	TTAATGTACGT	8.6
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m5	D	-99	-89	AAAATGTATAA	9.2
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m5	D	170	180	CAAATGTATAA	8.6
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m5	D	-253	-243	TAAATGTATAG	8.9
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m5	D	142	152	ATAATATATTA	7.5
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m5	D	195	205	TAAATGTATTT	8.9
hg38_ct_MyTrack_6202_2	site	oligos_6nt_mkv3_m5	D	335	345	ATAATGTATAA	9.8
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m5	D	-83	-73	AGAATGTATAA	8.9
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m5	R	-456	-446	GATATGTATAT	7.9
hg38_ct_MyTrack_6202_1	site	oligos_6nt_mkv3_m5	R	145	155	TATATGTATGT	7.5
hg38_ct_MyTrack_6202_0	site	oligos_6nt_mkv3_m5	D	-414	-404	TAAATGTATGA	8.7
;
; Matrices
;	matrix	name              	ncol	nrow	pseudo	Wmin	Wmax	Wrange
;	1	oligos_6nt_mkv3_m5	11	4	0	-21.700	9.000	30.700	a:0.296 c:0.204 g:0.202 t:0.298 
; Number of sequences scanned	226
; Sum of sequence lengths	226000
; N residues           	0
; Matches per matrix
;	matrix	name              	matches	scored
;	1	oligos_6nt_mkv3_m5	122	0
;		TOTAL          	122	0
; Host name	rsat
; Job started	2026-02-26.200819
; Job done	2026-02-26.200819
; Seconds	0.21
;	user	0.21
;	system	0.01
;	cuser	0.09
;	csystem	0.02
