/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title SMAD2_hela_hg38_SEACR_relaxed -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.200629_2026-02-26.200629_uoww0v/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	226
	Sum of sequence lengths      	226000
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	1000
	Possible positions           	225774
 Oligonucleotide statistics:
	Total occurrences    	196214
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	225774
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	226	4520
	2	-24	[-479,-460]	-469.5	226	4520
	3	-23	[-459,-440]	-449.5	226	4520
	4	-22	[-439,-420]	-429.5	226	4520
	5	-21	[-419,-400]	-409.5	226	4520
	6	-20	[-399,-380]	-389.5	226	4520
	7	-19	[-379,-360]	-369.5	226	4520
	8	-18	[-359,-340]	-349.5	226	4520
	9	-17	[-339,-320]	-329.5	226	4520
	10	-16	[-319,-300]	-309.5	226	4520
	11	-15	[-299,-280]	-289.5	226	4520
	12	-14	[-279,-260]	-269.5	226	4520
	13	-13	[-259,-240]	-249.5	226	4520
	14	-12	[-239,-220]	-229.5	226	4520
	15	-11	[-219,-200]	-209.5	226	4520
	16	-10	[-199,-180]	-189.5	226	4520
	17	-9	[-179,-160]	-169.5	226	4520
	18	-8	[-159,-140]	-149.5	226	4520
	19	-7	[-139,-120]	-129.5	226	4520
	20	-6	[-119,-100]	-109.5	226	4520
	21	-5	[-99,-80]	-89.5	226	4520
	22	-4	[-79,-60]	-69.5	226	4520
	23	-3	[-59,-40]	-49.5	226	4520
	24	-2	[-39,-20]	-29.5	226	4520
	25	-1	[-19,0]	-9.5	226	4520
	26	0	[1,20]	10.5	226	4520
	27	1	[21,40]	30.5	226	4520
	28	2	[41,60]	50.5	226	4520
	29	3	[61,80]	70.5	226	4520
	30	4	[81,100]	90.5	226	4520
	31	5	[101,120]	110.5	226	4520
	32	6	[121,140]	130.5	226	4520
	33	7	[141,160]	150.5	226	4520
	34	8	[161,180]	170.5	226	4520
	35	9	[181,200]	190.5	226	4520
	36	10	[201,220]	210.5	226	4520
	37	11	[221,240]	230.5	226	4520
	38	12	[241,260]	250.5	226	4520
	39	13	[261,280]	270.5	226	4520
	40	14	[281,300]	290.5	226	4520
	41	15	[301,320]	310.5	226	4520
	42	16	[321,340]	330.5	226	4520
	43	17	[341,360]	350.5	226	4520
	44	18	[361,380]	370.5	226	4520
	45	19	[381,400]	390.5	226	4520
	46	20	[401,420]	410.5	226	4520
	47	21	[421,440]	430.5	226	4520
	48	22	[441,460]	450.5	226	4520
	49	23	[461,480]	470.5	226	4520
	50	24	[481,500]	490.5	226	4294

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
cc cc 10092 97.4 49 4.7e-05 0.00076 3.12 1 242 204 177 181 202 207 211 226 185 179 209 217 208 164 224 210 205 178 204 215 172 221 228 189 213 215 210 211 229 188 194 207 202 235 229 196 228 218 189 181 209 188 184 195 218 142 175 185 199 194
tt tt 19585 94.9 49 9.2e-05 0.0015 2.83 2 389 357 381 360 357 394 393 388 375 395 391 348 396 375 374 373 423 373 413 376 404 388 377 375 365 401 413 401 365 439 416 441 440 380 339 388 337 363 406 436 403 442 424 396 440 441 411 384 383 356
gg gg 9746 80.5 49 3.0e-03 0.049 1.31 3 205 179 193 246 206 208 202 177 192 203 178 186 191 186 194 206 192 215 187 160 225 183 202 198 192 209 181 177 211 173 230 210 181 206 200 178 193 171 179 183 219 193 203 222 182 154 212 195 177 201
ct ct 14007 77.7 49 5.6e-03 0.09 1.05 4 287 283 253 244 279 247 290 296 291 264 262 265 288 288 296 295 270 275 293 300 283 295 311 291 269 286 277 309 281 315 315 319 309 287 268 240 256 281 298 255 261 277 300 267 253 262 256 258 254 308
aa aa 19526 70.8 49 2.3e-02 0.36 0.44 5 377 435 388 387 364 412 388 361 416 405 387 411 399 409 368 427 359 378 343 396 440 392 431 385 371 384 365 447 408 391 353 375 376 396 413 361 400 403 375 406 409 391 366 413 358 377 367 376 403 384
ac ac 9760 64.5 49 6.8e-02 1.1 -0.04 6 185 174 208 190 231 168 163 211 188 183 207 209 209 189 201 201 186 207 216 201 177 202 212 192 215 182 197 188 184 213 191 199 209 206 221 208 177 198 188 176 200 208 176 201 213 194 153 189 171 193
ta ta 12890 59.8 49 1.4e-01 2.2 -0.35 7 248 239 263 228 270 277 246 248 238 249 250 234 260 254 265 238 238 252 285 265 263 301 229 254 234 262 260 266 281 268 267 252 287 251 243 252 239 265 258 277 253 273 248 233 273 304 288 252 253 257
ca ca 14183 56.7 49 2.1e-01 3.4 -0.53 8 286 282 276 292 305 279 239 287 274 273 313 315 315 279 301 276 283 286 287 308 262 274 290 272 314 254 295 253 279 295 259 274 291 288 312 318 292 286 265 268 282 285 254 298 298 268 258 285 292 266
gt gt 9866 51.1 49 3.9e-01 6.2 -0.79 9 186 182 194 228 200 170 199 174 174 198 190 202 182 212 203 188 199 219 185 200 207 195 175 226 207 196 186 185 203 202 207 217 194 213 195 193 194 191 221 198 202 174 216 178 206 212 221 201 195 171
gc gc 8149 49.0 49 4.7e-01 7.6 -0.88 10 173 172 145 171 155 160 148 177 166 154 159 174 165 163 191 182 146 169 165 189 159 161 158 167 180 151 155 158 187 147 176 177 176 160 166 165 150 163 143 150 143 160 157 147 154 143 157 168 187 160
tc tc 11935 47.4 49 5.4e-01 8.6 -0.93 11 262 246 226 223 227 222 260 230 251 230 240 248 250 244 247 223 252 217 247 236 242 231 255 248 229 247 244 248 237 265 254 244 248 239 222 220 256 249 266 225 233 216 239 255 216 219 230 204 219 254
cg cg 1656 44.9 49 6.4e-01 10 -1.01 12 40 39 39 41 40 27 34 40 29 29 41 42 23 32 37 37 30 34 34 32 35 24 30 39 39 37 36 34 34 30 34 39 26 31 28 33 34 46 36 31 29 28 30 24 33 28 21 30 27 30
tg tg 14204 42.9 49 7.2e-01 11 -1.06 13 281 263 287 301 272 253 294 259 280 295 270 280 273 311 289 296 293 319 280 308 305 277 268 308 288 290 260 279 276 279 306 306 292 303 283 276 273 261 291 284 268 274 305 264 259 283 284 301 289 268
ag ag 13807 40.3 49 8.1e-01 13 -1.11 14 299 288 289 288 295 290 259 271 269 276 269 296 279 276 272 282 277 272 263 291 280 265 262 276 291 251 275 244 320 276 290 276 277 270 292 259 260 267 276 247 275 249 256 271 275 279 286 292 302 267
ga ga 11653 35.7 49 9.2e-01 15 -1.17 15 265 238 261 248 251 234 229 234 247 238 229 254 218 245 206 238 252 237 237 234 241 227 218 231 231 234 228 225 224 236 252 231 224 229 233 220 215 231 225 227 233 211 212 230 216 225 220 245 241 243
at at 15155 32.9 49 9.6e-01 15 -1.19 16 314 298 299 294 291 331 312 275 306 293 312 303 312 303 294 296 306 297 333 308 311 317 280 285 282 305 322 295 294 301 300 283 307 305 279 311 319 307 299 325 296 315 280 303 296 340 313 293 319 296 
 Host name	rsat
 Job started	2026-02-26.200633
 Job done	2026-02-26.200635
 Seconds	1.29
	user	1.29
	system	0.02
	cuser	0
;	csystem	0