/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211242_2026-02-26.211242_nt22t5/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211242_2026-02-26.211242_nt22t5/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title SMAD2_helasherg_SEACR_stringent -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211242_2026-02-26.211242_nt22t5/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211242_2026-02-26.211242_nt22t5/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211242_2026-02-26.211242_nt22t5/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	342
	Sum of sequence lengths      	341706
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	999
	Possible positions           	341364
 Oligonucleotide statistics:
	Total occurrences    	284746
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	341364
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	341	6820
	2	-24	[-479,-460]	-469.5	341	6820
	3	-23	[-459,-440]	-449.5	341	6820
	4	-22	[-439,-420]	-429.5	341	6820
	5	-21	[-419,-400]	-409.5	341	6820
	6	-20	[-399,-380]	-389.5	341	6820
	7	-19	[-379,-360]	-369.5	341	6820
	8	-18	[-359,-340]	-349.5	342	6834
	9	-17	[-339,-320]	-329.5	342	6840
	10	-16	[-319,-300]	-309.5	342	6840
	11	-15	[-299,-280]	-289.5	342	6840
	12	-14	[-279,-260]	-269.5	342	6840
	13	-13	[-259,-240]	-249.5	342	6840
	14	-12	[-239,-220]	-229.5	342	6840
	15	-11	[-219,-200]	-209.5	342	6840
	16	-10	[-199,-180]	-189.5	342	6840
	17	-9	[-179,-160]	-169.5	342	6840
	18	-8	[-159,-140]	-149.5	342	6840
	19	-7	[-139,-120]	-129.5	342	6840
	20	-6	[-119,-100]	-109.5	342	6840
	21	-5	[-99,-80]	-89.5	342	6840
	22	-4	[-79,-60]	-69.5	342	6840
	23	-3	[-59,-40]	-49.5	342	6840
	24	-2	[-39,-20]	-29.5	342	6840
	25	-1	[-19,0]	-9.5	342	6840
	26	0	[1,20]	10.5	342	6840
	27	1	[21,40]	30.5	342	6840
	28	2	[41,60]	50.5	342	6840
	29	3	[61,80]	70.5	342	6840
	30	4	[81,100]	90.5	342	6840
	31	5	[101,120]	110.5	342	6840
	32	6	[121,140]	130.5	342	6840
	33	7	[141,160]	150.5	342	6840
	34	8	[161,180]	170.5	342	6840
	35	9	[181,200]	190.5	342	6840
	36	10	[201,220]	210.5	342	6840
	37	11	[221,240]	230.5	342	6840
	38	12	[241,260]	250.5	342	6840
	39	13	[261,280]	270.5	342	6840
	40	14	[281,300]	290.5	342	6840
	41	15	[301,320]	310.5	342	6840
	42	16	[321,340]	330.5	342	6840
	43	17	[341,360]	350.5	342	6831
	44	18	[361,380]	370.5	341	6820
	45	19	[381,400]	390.5	341	6820
	46	20	[401,420]	410.5	341	6820
	47	21	[421,440]	430.5	341	6820
	48	22	[441,460]	450.5	341	6820
	49	23	[461,480]	470.5	341	6820
	50	24	[481,500]	490.5	341	6479

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
tt tt 28002 98.1 49 3.9e-05 0.00063 3.20 1 563 577 570 538 526 570 560 596 587 591 610 578 633 629 567 562 606 573 572 519 497 530 558 580 595 577 644 527 533 556 562 528 510 519 510 590 554 537 526 514 567 577 582 559 538 520 525 542 563 555
gg gg 14221 88.3 49 4.9e-04 0.0078 2.11 2 320 323 321 321 292 305 304 305 307 294 287 302 304 266 222 272 242 267 260 267 276 278 271 276 257 294 277 298 289 289 251 297 282 273 298 279 272 294 281 329 255 253 272 281 272 291 270 322 297 266
ga ga 17149 81.3 49 2.5e-03 0.041 1.39 3 371 398 368 361 375 358 395 392 356 331 364 377 377 344 354 344 323 334 333 335 345 332 313 366 341 321 308 321 337 304 344 321 330 336 317 315 328 376 328 322 307 339 335 339 345 323 319 351 346 350
ag ag 20016 79.0 49 4.2e-03 0.067 1.17 4 463 441 434 423 410 407 441 467 401 391 415 435 428 416 417 381 407 382 385 372 426 391 377 390 384 372 366 406 360 362 380 395 378 386 360 384 392 430 406 392 384 380 378 409 395 397 396 404 423 397
aa aa 28901 69.4 49 2.9e-02 0.47 0.33 5 611 619 603 556 548 581 587 576 590 579 592 533 618 587 600 580 603 568 569 560 565 557 521 574 624 578 540 576 602 581 573 586 607 552 588 547 540 552 560 551 623 603 558 612 538 576 539 567 644 607
cc cc 13800 66.1 49 5.2e-02 0.84 0.08 6 276 274 296 258 293 293 262 253 256 287 277 272 299 273 275 312 290 278 255 291 257 290 294 274 251 272 273 271 282 268 279 275 303 221 275 284 302 258 256 238 267 276 249 295 283 305 291 263 272 306
ac ac 14472 57.3 49 1.9e-01 3.1 -0.49 7 317 286 295 281 325 298 284 289 285 306 286 271 282 258 288 322 315 281 292 302 280 287 318 260 283 259 288 290 280 253 291 295 300 304 309 258 279 281 261 310 315 258 317 287 292 287 306 291 276 294
ta ta 19591 55.6 49 2.4e-01 3.9 -0.59 8 422 357 378 392 400 366 387 379 375 390 426 410 345 405 398 411 397 397 378 396 385 385 406 388 423 389 411 370 368 362 345 401 367 430 387 389 398 379 403 391 413 373 437 387 421 411 368 395 406 394
gc gc 11575 54.6 49 2.7e-01 4.3 -0.64 9 257 231 227 234 245 251 253 236 257 238 214 223 229 225 233 213 213 260 223 235 204 230 221 207 193 216 223 229 226 234 210 255 233 241 256 257 244 232 214 241 227 219 213 229 217 246 259 239 234 229
tc tc 16560 51.8 49 3.6e-01 5.8 -0.76 10 327 330 338 367 336 365 329 336 313 319 322 337 326 339 384 352 337 299 331 315 318 319 346 343 310 350 320 314 312 323 343 334 327 301 309 316 355 334 346 308 331 346 306 327 365 334 346 302 334 339
cg cg 2374 50.2 49 4.2e-01 6.8 -0.83 11 61 55 50 48 51 60 48 42 47 47 50 45 53 46 56 49 36 52 41 51 37 51 50 48 32 48 53 26 52 42 47 56 53 57 55 53 54 42 44 47 46 47 46 44 48 45 43 43 31 46
ct ct 19842 49.9 49 4.4e-01 7 -0.84 12 415 402 406 430 438 419 421 400 392 413 382 398 367 379 422 428 396 402 395 380 372 389 413 384 368 392 384 375 355 363 378 400 405 397 401 401 399 392 405 390 402 398 350 413 443 388 417 395 410 378
tg tg 20772 48.0 49 5.1e-01 8.2 -0.91 13 409 440 407 428 437 430 442 414 459 453 396 424 389 414 398 414 400 427 432 391 419 397 371 388 407 406 404 413 390 417 429 410 409 440 418 429 406 404 417 430 369 434 406 419 410 405 415 467 427 412
gt gt 14422 48.0 49 5.1e-01 8.2 -0.91 14 294 310 299 307 276 280 290 292 308 318 276 304 267 305 286 291 285 295 292 253 308 293 266 248 286 292 284 279 252 298 283 294 275 301 270 285 264 294 306 310 275 295 287 293 285 287 269 329 302 284
at at 22656 42.1 49 7.5e-01 12 -1.08 15 444 425 415 460 454 462 457 438 449 433 493 445 435 478 463 457 451 441 457 461 425 438 448 475 486 474 453 434 478 445 446 438 443 461 442 454 475 448 452 421 446 459 489 423 470 480 446 444 458 487
ca ca 20393 39.5 49 8.3e-01 13 -1.12 16 415 394 406 410 412 433 408 411 408 408 406 367 418 402 409 408 437 397 415 416 392 403 413 385 378 403 390 421 423 409 416 411 406 390 417 387 418 401 398 398 439 384 433 383 390 427 462 390 421 425 
 Host name	rsat
 Job started	2026-02-26.211248
 Job done	2026-02-26.211250
 Seconds	1.95
	user	1.95
	system	0.03
	cuser	0
;	csystem	0