/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211454_2026-02-26.211454_TYLWqA/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211454_2026-02-26.211454_TYLWqA/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211454_2026-02-26.211454_TYLWqA/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211454_2026-02-26.211454_TYLWqA/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211454_2026-02-26.211454_TYLWqA/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211454_2026-02-26.211454_TYLWqA/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211454_2026-02-26.211454_TYLWqA/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211454_2026-02-26.211454_TYLWqA/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	html_index   	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211454_2026-02-26.211454_TYLWqA/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211454_2026-02-26.211454_TYLWqA/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211454_2026-02-26.211454_TYLWqA/results/discovered_motifs/peak-motifs_motifs_disco_compa
 Matrices
	file1	29 matrices	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211454_2026-02-26.211454_TYLWqA/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	10	659
		file1	2	11	545
		file1	3	11	578
		file1	4	12	728
		file1	5	11	464
		file1	6	10	421
		file1	7	11	647
		file1	8	10	451
		file1	9	10	292
		file1	10	11	247
		file1	11	10	320
		...	19 more matrices
	file2	29 matrices	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.211454_2026-02-26.211454_TYLWqA/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		10		659
		file2		2		11		545
		file2		3		11		578
		file2		4		12		728
		file2		5		11		464
		file2		6		10		421
		file2		7		11		647
		file2		8		10		451
		file2		9		10		292
		file2		10		11		247
		file2		11		10		320
		...	19 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 oligos_7nt_mkv4_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
positions_6nt_m1 positions_6nt_m1 positions_6nt_m1 positions_6nt_m1 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m9 dyads_m9 dyads_m9 dyads_m9 1.000 1.000 19 19 19 19 1.0000 1.0000 1.0000 D 0
dyads_m4 dyads_m4 dyads_m4 dyads_m4 1.000 1.000 18 18 18 18 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 oligos_7nt_mkv4_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 oligos_7nt_mkv4_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 oligos_6nt_mkv3_m2 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m1 dyads_m1 dyads_m1 dyads_m1 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv5_m2 oligos_8nt_mkv5_m2 oligos_8nt_mkv5_m2 oligos_8nt_mkv5_m2 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m1 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m7 dyads_m7 dyads_m7 dyads_m7 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m8 oligos_6nt_mkv3_m8 oligos_6nt_mkv3_m8 oligos_6nt_mkv3_m8 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m7 oligos_6nt_mkv3_m7 oligos_6nt_mkv3_m7 oligos_6nt_mkv3_m7 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m8 dyads_m8 dyads_m8 dyads_m8 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
dyads_m2 dyads_m2 dyads_m2 dyads_m2 1.000 1.000 19 19 19 19 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m6 oligos_7nt_mkv4_m6 oligos_7nt_mkv4_m6 oligos_7nt_mkv4_m6 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m10 dyads_m10 dyads_m10 dyads_m10 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 oligos_7nt_mkv4_m1 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 oligos_7nt_mkv4_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m10 oligos_6nt_mkv3_m10 oligos_6nt_mkv3_m10 oligos_6nt_mkv3_m10 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m9 oligos_6nt_mkv3_m9 oligos_6nt_mkv3_m9 oligos_6nt_mkv3_m9 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m5 dyads_m5 dyads_m5 dyads_m5 1.000 1.000 20 20 20 20 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv5_m1 oligos_8nt_mkv5_m1 oligos_8nt_mkv5_m1 oligos_8nt_mkv5_m1 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m6 oligos_6nt_mkv3_m6 oligos_6nt_mkv3_m6 oligos_6nt_mkv3_m6 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m3 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
dyads_m3 dyads_m3 dyads_m3 dyads_m3 1.000 1.000 15 15 15 15 1.0000 1.0000 1.0000 D 0
dyads_m6 dyads_m6 dyads_m6 dyads_m6 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
dyads_m10 oligos_6nt_mkv3_m2 dyads_m10 oligos_6nt_mkv3_m2 0.940 0.940 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m2 dyads_m10 oligos_6nt_mkv3_m2 dyads_m10 0.940 0.940 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_8nt_mkv5_m1 oligos_7nt_mkv4_m5 oligos_8nt_mkv5_m1 oligos_7nt_mkv4_m5 0.953 0.874 12 11 11 12 0.9167 0.9167 1.0000 D 0
oligos_7nt_mkv4_m5 oligos_8nt_mkv5_m1 oligos_7nt_mkv4_m5 oligos_8nt_mkv5_m1 0.953 0.874 11 12 11 12 0.9167 1.0000 0.9167 D 0
oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m6 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m6 0.951 0.864 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv3_m6 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m6 oligos_7nt_mkv4_m2 0.951 0.864 10 11 10 11 0.9091 1.0000 0.9091 D -1
dyads_m9 dyads_m2 dyads_m9 dyads_m2 0.827 0.827 19 19 19 19 1.0000 1.0000 1.0000 D 0
dyads_m2 dyads_m9 dyads_m2 dyads_m9 0.827 0.827 19 19 19 19 1.0000 1.0000 1.0000 D 0
dyads_m4 dyads_m1 dyads_m4 dyads_m1 0.899 0.799 18 16 16 18 0.8889 0.8889 1.0000 D 1
dyads_m1 dyads_m4 dyads_m1 dyads_m4 0.899 0.799 16 18 16 18 0.8889 1.0000 0.8889 D -1
oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m8 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m8 0.795 0.795 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m8 oligos_6nt_mkv3_m1 oligos_6nt_mkv3_m8 oligos_6nt_mkv3_m1 0.795 0.795 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m7 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m7 oligos_6nt_mkv3_m3 0.774 0.774 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m7 oligos_6nt_mkv3_m3 oligos_6nt_mkv3_m7 0.774 0.774 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m9 oligos_6nt_mkv3_m6 oligos_6nt_mkv3_m9 oligos_6nt_mkv3_m6 0.762 0.762 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv3_m6 oligos_6nt_mkv3_m9 oligos_6nt_mkv3_m6 oligos_6nt_mkv3_m9 0.762 0.762 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv4_m2 dyads_m7 oligos_7nt_mkv4_m2 dyads_m7 0.871 0.737 11 13 11 13 0.8462 1.0000 0.8462 D 0
dyads_m7 oligos_7nt_mkv4_m2 dyads_m7 oligos_7nt_mkv4_m2 0.871 0.737 13 11 11 13 0.8462 0.8462 1.0000 D 0
dyads_m5 dyads_m9 dyads_m5 dyads_m9 0.746 0.709 20 19 19 20 0.9500 0.9500 1.0000 D 1
dyads_m9 dyads_m5 dyads_m9 dyads_m5 0.746 0.709 19 20 19 20 0.9500 1.0000 0.9500 D -1
dyads_m1 oligos_6nt_mkv3_m4 dyads_m1 oligos_6nt_mkv3_m4 0.929 0.697 16 12 12 16 0.7500 0.7500 1.0000 D 1
oligos_6nt_mkv3_m4 dyads_m1 oligos_6nt_mkv3_m4 dyads_m1 0.929 0.697 12 16 12 16 0.7500 1.0000 0.7500 D -1
dyads_m7 oligos_6nt_mkv3_m6 dyads_m7 oligos_6nt_mkv3_m6 0.884 0.680 13 10 10 13 0.7692 0.7692 1.0000 D 1
oligos_6nt_mkv3_m6 dyads_m7 oligos_6nt_mkv3_m6 dyads_m7 0.884 0.680 10 13 10 13 0.7692 1.0000 0.7692 D -1
dyads_m7 oligos_6nt_mkv3_m8 dyads_m7 oligos_6nt_mkv3_m8 0.865 0.665 13 10 10 13 0.7692 0.7692 1.0000 R 3
oligos_6nt_mkv3_m8 dyads_m7 oligos_6nt_mkv3_m8 dyads_m7 0.865 0.665 10 13 10 13 0.7692 1.0000 0.7692 R 0
dyads_m6 oligos_6nt_mkv3_m3 dyads_m6 oligos_6nt_mkv3_m3 0.728 0.661 10 11 10 11 0.9091 1.0000 0.9091 D -1
oligos_6nt_mkv3_m3 dyads_m6 oligos_6nt_mkv3_m3 dyads_m6 0.728 0.661 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv3_m9 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m9 oligos_7nt_mkv4_m2 0.726 0.660 10 11 10 11 0.9091 1.0000 0.9091 D -1
oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m9 oligos_7nt_mkv4_m2 oligos_6nt_mkv3_m9 0.726 0.660 11 10 10 11 0.9091 0.9091 1.0000 D 1
dyads_m2 dyads_m5 dyads_m2 dyads_m5 0.718 0.616 19 20 18 21 0.8571 0.9474 0.9000 D -2
dyads_m5 dyads_m2 dyads_m5 dyads_m2 0.718 0.616 20 19 18 21 0.8571 0.9000 0.9474 D 2
dyads_m3 oligos_6nt_mkv3_m1 dyads_m3 oligos_6nt_mkv3_m1 0.855 0.570 15 10 10 15 0.6667 0.6667 1.0000 D 4
oligos_6nt_mkv3_m1 dyads_m3 oligos_6nt_mkv3_m1 dyads_m3 0.855 0.570 10 15 10 15 0.6667 1.0000 0.6667 D -4
oligos_6nt_mkv3_m4 dyads_m4 oligos_6nt_mkv3_m4 dyads_m4 0.831 0.554 12 18 12 18 0.6667 1.0000 0.6667 D -2
dyads_m4 oligos_6nt_mkv3_m4 dyads_m4 oligos_6nt_mkv3_m4 0.831 0.554 18 12 12 18 0.6667 0.6667 1.0000 D 2
oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m4 0.715 0.550 11 12 10 13 0.7692 0.9091 0.8333 D -2
oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m5 oligos_6nt_mkv3_m4 oligos_6nt_mkv3_m5 0.715 0.550 12 11 10 13 0.7692 0.8333 0.9091 D 2
oligos_6nt_mkv3_m8 dyads_m3 oligos_6nt_mkv3_m8 dyads_m3 0.775 0.517 10 15 10 15 0.6667 1.0000 0.6667 D -4
dyads_m3 oligos_6nt_mkv3_m8 dyads_m3 oligos_6nt_mkv3_m8 0.775 0.517 15 10 10 15 0.6667 0.6667 1.0000 D 4
dyads_m1 oligos_6nt_mkv3_m5 dyads_m1 oligos_6nt_mkv3_m5 0.748 0.514 16 11 11 16 0.6875 0.6875 1.0000 D 3
oligos_6nt_mkv3_m5 dyads_m1 oligos_6nt_mkv3_m5 dyads_m1 0.748 0.514 11 16 11 16 0.6875 1.0000 0.6875 D -3
oligos_6nt_mkv3_m5 dyads_m4 oligos_6nt_mkv3_m5 dyads_m4 0.784 0.479 11 18 11 18 0.6111 1.0000 0.6111 D -4
dyads_m4 oligos_6nt_mkv3_m5 dyads_m4 oligos_6nt_mkv3_m5 0.784 0.479 18 11 11 18 0.6111 0.6111 1.0000 D 4
positions_6nt_m1 oligos_7nt_mkv4_m4 positions_6nt_m1 oligos_7nt_mkv4_m4 0.778 0.479 10 11 8 13 0.6154 0.8000 0.7273 R 2
oligos_7nt_mkv4_m4 positions_6nt_m1 oligos_7nt_mkv4_m4 positions_6nt_m1 0.778 0.479 11 10 8 13 0.6154 0.7273 0.8000 R 3
dyads_m2 oligos_6nt_mkv3_m3 dyads_m2 oligos_6nt_mkv3_m3 0.701 0.406 19 11 11 19 0.5789 0.5789 1.0000 D 5
oligos_6nt_mkv3_m3 dyads_m2 oligos_6nt_mkv3_m3 dyads_m2 0.701 0.406 11 19 11 19 0.5789 1.0000 0.5789 D -5
 Host name	rsat
 Job started	2026-02-26.211622
 Job done	2026-02-26.211640
 Seconds	0.86
	user	0.86
	system	0.6
	cuser	13.82
;	csystem	2.53