compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file1 $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1.tf Output files match_table_txt $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab prefix $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant match_table_html $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html alignments_1ton $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab html_index $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1.tf file1 1 10 1 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_mkv1_m1 | MA0482.3 | oligos_6nt_mkv1_m1 | GATA4 | 0.861 | 0.548 | 10 | 8 | 7 | 11 | 0.6364 | 0.7000 | 0.8750 | D | 3 |
| oligos_6nt_mkv1_m1 | MA0037.5 | oligos_6nt_mkv1_m1 | Gata3 | 0.860 | 0.547 | 10 | 8 | 7 | 11 | 0.6364 | 0.7000 | 0.8750 | D | 3 |
| oligos_6nt_mkv1_m1 | MA1104.3 | oligos_6nt_mkv1_m1 | GATA6 | 0.855 | 0.544 | 10 | 8 | 7 | 11 | 0.6364 | 0.7000 | 0.8750 | D | 3 |
| oligos_6nt_mkv1_m1 | MA1970.2 | oligos_6nt_mkv1_m1 | TRPS1 | 0.854 | 0.544 | 10 | 8 | 7 | 11 | 0.6364 | 0.7000 | 0.8750 | D | 3 |
| oligos_6nt_mkv1_m1 | MA0036.4 | oligos_6nt_mkv1_m1 | GATA2 | 0.992 | 0.541 | 10 | 7 | 6 | 11 | 0.5455 | 0.6000 | 0.8571 | D | 4 |
| oligos_6nt_mkv1_m1 | MA0124.3 | oligos_6nt_mkv1_m1 | Nkx3-1 | 0.773 | 0.541 | 10 | 7 | 7 | 10 | 0.7000 | 0.7000 | 1.0000 | D | 1 |
| oligos_6nt_mkv1_m1 | MA0766.3 | oligos_6nt_mkv1_m1 | GATA5 | 0.845 | 0.537 | 10 | 8 | 7 | 11 | 0.6364 | 0.7000 | 0.8750 | R | 3 |
| oligos_6nt_mkv1_m1 | MA0767.2 | oligos_6nt_mkv1_m1 | GCM2 | 0.783 | 0.498 | 10 | 8 | 7 | 11 | 0.6364 | 0.7000 | 0.8750 | R | -1 |
| oligos_6nt_mkv1_m1 | MA0035.5 | oligos_6nt_mkv1_m1 | GATA1 | 0.878 | 0.479 | 10 | 7 | 6 | 11 | 0.5455 | 0.6000 | 0.8571 | D | 4 |
| oligos_6nt_mkv1_m1 | MA0877.4 | oligos_6nt_mkv1_m1 | BARHL1 | 0.790 | 0.474 | 10 | 6 | 6 | 10 | 0.6000 | 0.6000 | 1.0000 | D | 2 |
| oligos_6nt_mkv1_m1 | MA0635.2 | oligos_6nt_mkv1_m1 | BARHL2 | 0.773 | 0.464 | 10 | 6 | 6 | 10 | 0.6000 | 0.6000 | 1.0000 | R | 2 |
| oligos_6nt_mkv1_m1 | MA1122.2 | oligos_6nt_mkv1_m1 | TFDP1 | 0.867 | 0.433 | 10 | 8 | 6 | 12 | 0.5000 | 0.6000 | 0.7500 | R | -2 |
| oligos_6nt_mkv1_m1 | MA0914.2 | oligos_6nt_mkv1_m1 | ISL2 | 0.709 | 0.426 | 10 | 6 | 6 | 10 | 0.6000 | 0.6000 | 1.0000 | D | 2 |
| oligos_6nt_mkv1_m1 | MA0646.2 | oligos_6nt_mkv1_m1 | GCM1 | 0.775 | 0.417 | 10 | 10 | 7 | 13 | 0.5385 | 0.7000 | 0.7000 | R | -3 |
Host name rsat Job started 2026-02-26.234334 Job done 2026-02-26.234343 Seconds 1.88 user 1.88 system 0.43 cuser 6.86 ; csystem 0.65