One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m1_shift3 ; 15 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m1_shift3 (oligos_6nt_mkv1_m1)
; oligos_6nt_mkv1_m1; m=0 (reference); ncol1=10; shift=3; ncol=13; ---CCCGCTTATC ; Alignment reference a 0 0 0 0 0 0 0 0 0 0 1 0 0 c 0 0 0 1 1 1 0 1 0 0 0 0 1 g 0 0 0 0 0 0 1 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 1 1 0 1 0

MA0482.3_shift6 (GATA4)
; oligos_6nt_mkv1_m1 versus MA0482.3 (GATA4); m=1/14; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.548131; ------cCTTATC ; cor=; Ncor= a 0 0 0 0 0 0 3977.0 3150.0 1586.0 1650.0 54420.0 770.0 480.0 c 0 0 0 0 0 0 38289.0 50062.0 1429.0 1377.0 1703.0 582.0 56544.0 g 0 0 0 0 0 0 5099.0 1103.0 749.0 808.0 1245.0 539.0 568.0 t 0 0 0 0 0 0 11649.0 4699.0 55250.0 55179.0 1646.0 57123.0 1422.0

MA0037.5_shift6 (Gata3)
; oligos_6nt_mkv1_m1 versus MA0037.5 (Gata3); m=2/14; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.547248; ------tCTTATC ; cor=; Ncor= a 0 0 0 0 0 0 2016.0 946.0 794.0 984.0 22974.0 427.0 294.0 c 0 0 0 0 0 0 3859.0 19702.0 928.0 758.0 566.0 282.0 23839.0 g 0 0 0 0 0 0 2551.0 2165.0 280.0 960.0 528.0 291.0 255.0 t 0 0 0 0 0 0 16442.0 2055.0 22866.0 22166.0 800.0 23868.0 480.0

MA1104.3_shift6 (GATA6)
; oligos_6nt_mkv1_m1 versus MA1104.3 (GATA6); m=3/14; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.544143; ------TCTTATC ; cor=; Ncor= a 0 0 0 0 0 0 5912.0 4535.0 2560.0 5044.0 76686.0 1507.0 1096.0 c 0 0 0 0 0 0 11831.0 62936.0 1439.0 1393.0 815.0 852.0 75930.0 g 0 0 0 0 0 0 7066.0 6459.0 580.0 615.0 819.0 456.0 712.0 t 0 0 0 0 0 0 54635.0 5514.0 74865.0 72392.0 1124.0 76629.0 1706.0

MA1970.2_shift6 (TRPS1)
; oligos_6nt_mkv1_m1 versus MA1970.2 (TRPS1); m=4/14; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.543685; ------TCTTATC ; cor=; Ncor= a 0 0 0 0 0 0 1359.0 941.0 645.0 874.0 17440.0 312.0 252.0 c 0 0 0 0 0 0 2547.0 14262.0 560.0 462.0 215.0 265.0 17146.0 g 0 0 0 0 0 0 1749.0 1426.0 320.0 449.0 329.0 179.0 263.0 t 0 0 0 0 0 0 12628.0 1654.0 16758.0 16498.0 299.0 17527.0 622.0

MA0036.4_shift7 (GATA2)
; oligos_6nt_mkv1_m1 versus MA0036.4 (GATA2); m=5/14; ncol2=7; w=0; offset=4; strand=D; shift=7; score=0.541189; -------CTTATC ; cor=; Ncor= a 0 0 0 0 0 0 0 940.0 444.0 417.0 14098.0 145.0 96.0 c 0 0 0 0 0 0 0 10607.0 259.0 34.0 14.0 77.0 13786.0 g 0 0 0 0 0 0 0 1223.0 150.0 21.0 43.0 48.0 126.0 t 0 0 0 0 0 0 0 1443.0 13360.0 13741.0 58.0 13943.0 205.0

MA0124.3_shift4 (Nkx3-1)
; oligos_6nt_mkv1_m1 versus MA0124.3 (Nkx3-1); m=6/14; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.54102; ----cCACTTA-- ; cor=; Ncor= a 0 0 0 0 981.0 0.0 5335.0 59.0 0.0 0.0 5335.0 0 0 c 0 0 0 0 5335.0 5335.0 28.0 5335.0 1.0 254.0 273.0 0 0 g 0 0 0 0 1776.0 10.0 10.0 9.0 0.0 0.0 173.0 0 0 t 0 0 0 0 275.0 336.0 88.0 9.0 5335.0 5335.0 523.0 0 0

MA0766.3_rc_shift6 (GATA5_rc)
; oligos_6nt_mkv1_m1 versus MA0766.3_rc (GATA5_rc); m=7/14; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.537429; ------ysTTATC ; cor=; Ncor= a 0 0 0 0 0 0 668.0 586.0 204.0 331.0 15369.0 0.0 0.0 c 0 0 0 0 0 0 8179.0 7774.0 200.0 0.0 0.0 0.0 15369.0 g 0 0 0 0 0 0 3215.0 7594.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 0 7190.0 212.0 15369.0 15369.0 0.0 15369.0 0.0

MA0767.2_rc_shift2 (GCM2_rc)
; oligos_6nt_mkv1_m1 versus MA0767.2_rc (GCM2_rc); m=8/14; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.497998; --rCCCGCAT--- ; cor=; Ncor= a 0 0 1320.0 0.0 13.0 66.0 127.0 0.0 1320.0 45.0 0 0 0 c 0 0 91.0 1320.0 1320.0 1320.0 138.0 1320.0 24.0 299.0 0 0 0 g 0 0 533.0 0.0 0.0 1.0 1320.0 32.0 41.0 77.0 0 0 0 t 0 0 92.0 1.0 0.0 51.0 84.0 263.0 23.0 1320.0 0 0 0

MA0035.5_shift7 (GATA1)
; oligos_6nt_mkv1_m1 versus MA0035.5 (GATA1); m=9/14; ncol2=7; w=0; offset=4; strand=D; shift=7; score=0.47893; -------CTWATC ; cor=; Ncor= a 0 0 0 0 0 0 0 3953.0 1314.0 49692.0 67550.0 2206.0 2567.0 c 0 0 0 0 0 0 0 62419.0 595.0 710.0 1292.0 1238.0 65937.0 g 0 0 0 0 0 0 0 2712.0 652.0 856.0 988.0 618.0 1471.0 t 0 0 0 0 0 0 0 2744.0 69267.0 20570.0 1998.0 67766.0 1853.0

MA0877.4_shift5 (BARHL1)
; oligos_6nt_mkv1_m1 versus MA0877.4 (BARHL1); m=10/14; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.47409; -----CGTTTA-- ; cor=; Ncor= a 0 0 0 0 0 202.0 833.0 281.0 0.0 96.0 3960.0 0 0 c 0 0 0 0 0 3960.0 34.0 223.0 4.0 9.0 16.0 0 0 g 0 0 0 0 0 3.0 3960.0 33.0 0.0 0.0 26.0 0 0 t 0 0 0 0 0 26.0 46.0 3960.0 3960.0 3960.0 125.0 0 0

MA0635.2_rc_shift5 (BARHL2_rc)
; oligos_6nt_mkv1_m1 versus MA0635.2_rc (BARHL2_rc); m=11/14; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.463612; -----CrTTTA-- ; cor=; Ncor= a 0 0 0 0 0 1335.0 7756.0 4032.0 0.0 1969.0 12855.0 0 0 c 0 0 0 0 0 12855.0 127.0 1086.0 0.0 0.0 0.0 0 0 g 0 0 0 0 0 0.0 12855.0 116.0 0.0 0.0 0.0 0 0 t 0 0 0 0 0 1570.0 443.0 12855.0 12855.0 12855.0 643.0 0 0

MA1122.2_rc_shift1 (TFDP1_rc)
; oligos_6nt_mkv1_m1 versus MA1122.2_rc (TFDP1_rc); m=12/14; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.433458; -TTCCCGCs---- ; cor=; Ncor= a 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 0 c 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 0 g 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 0 t 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0 0

MA0914.2_shift5 (ISL2)
; oligos_6nt_mkv1_m1 versus MA0914.2 (ISL2); m=13/14; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.425612; -----CAmTTA-- ; cor=; Ncor= a 0 0 0 0 0 160.0 5631.0 3161.0 218.0 278.0 5631.0 0 0 c 0 0 0 0 0 5631.0 162.0 5631.0 130.0 718.0 206.0 0 0 g 0 0 0 0 0 126.0 134.0 171.0 169.0 13.0 59.0 0 0 t 0 0 0 0 0 1019.0 248.0 398.0 5631.0 5631.0 1354.0 0 0

MA0646.2_rc_shift0 (GCM1_rc)
; oligos_6nt_mkv1_m1 versus MA0646.2_rc (GCM1_rc); m=14/14; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.417404; gtACCCGCAT--- ; cor=; Ncor= a 2409.0 2014.0 21439.0 10.0 35.0 3815.0 880.0 15.0 21439.0 261.0 0 0 0 c 4829.0 7971.0 147.0 21439.0 21439.0 21439.0 572.0 21439.0 96.0 4010.0 0 0 0 g 13412.0 2905.0 4992.0 18.0 4.0 255.0 21439.0 274.0 154.0 1811.0 0 0 0 t 789.0 21439.0 146.0 0.0 0.0 594.0 1002.0 4371.0 161.0 21439.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m1_shift3 (oligos_6nt_mkv1_m1)				; oligos_6nt_mkv1_m1; m=0 (reference); ncol1=10; shift=3; ncol=13; ---CCCGCTTATC ; Alignment reference a 0 0 0 0 0 0 0 0 0 0 1 0 0 c 0 0 0 1 1 1 0 1 0 0 0 0 1 g 0 0 0 0 0 0 1 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 1 1 0 1 0
MA0482.3_shift6 (GATA4)				; oligos_6nt_mkv1_m1 versus MA0482.3 (GATA4); m=1/14; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.548131; ------cCTTATC ; cor=; Ncor= a 0 0 0 0 0 0 3977.0 3150.0 1586.0 1650.0 54420.0 770.0 480.0 c 0 0 0 0 0 0 38289.0 50062.0 1429.0 1377.0 1703.0 582.0 56544.0 g 0 0 0 0 0 0 5099.0 1103.0 749.0 808.0 1245.0 539.0 568.0 t 0 0 0 0 0 0 11649.0 4699.0 55250.0 55179.0 1646.0 57123.0 1422.0
MA0037.5_shift6 (Gata3)				; oligos_6nt_mkv1_m1 versus MA0037.5 (Gata3); m=2/14; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.547248; ------tCTTATC ; cor=; Ncor= a 0 0 0 0 0 0 2016.0 946.0 794.0 984.0 22974.0 427.0 294.0 c 0 0 0 0 0 0 3859.0 19702.0 928.0 758.0 566.0 282.0 23839.0 g 0 0 0 0 0 0 2551.0 2165.0 280.0 960.0 528.0 291.0 255.0 t 0 0 0 0 0 0 16442.0 2055.0 22866.0 22166.0 800.0 23868.0 480.0
MA1104.3_shift6 (GATA6)				; oligos_6nt_mkv1_m1 versus MA1104.3 (GATA6); m=3/14; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.544143; ------TCTTATC ; cor=; Ncor= a 0 0 0 0 0 0 5912.0 4535.0 2560.0 5044.0 76686.0 1507.0 1096.0 c 0 0 0 0 0 0 11831.0 62936.0 1439.0 1393.0 815.0 852.0 75930.0 g 0 0 0 0 0 0 7066.0 6459.0 580.0 615.0 819.0 456.0 712.0 t 0 0 0 0 0 0 54635.0 5514.0 74865.0 72392.0 1124.0 76629.0 1706.0
MA1970.2_shift6 (TRPS1)				; oligos_6nt_mkv1_m1 versus MA1970.2 (TRPS1); m=4/14; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.543685; ------TCTTATC ; cor=; Ncor= a 0 0 0 0 0 0 1359.0 941.0 645.0 874.0 17440.0 312.0 252.0 c 0 0 0 0 0 0 2547.0 14262.0 560.0 462.0 215.0 265.0 17146.0 g 0 0 0 0 0 0 1749.0 1426.0 320.0 449.0 329.0 179.0 263.0 t 0 0 0 0 0 0 12628.0 1654.0 16758.0 16498.0 299.0 17527.0 622.0
MA0036.4_shift7 (GATA2)				; oligos_6nt_mkv1_m1 versus MA0036.4 (GATA2); m=5/14; ncol2=7; w=0; offset=4; strand=D; shift=7; score=0.541189; -------CTTATC ; cor=; Ncor= a 0 0 0 0 0 0 0 940.0 444.0 417.0 14098.0 145.0 96.0 c 0 0 0 0 0 0 0 10607.0 259.0 34.0 14.0 77.0 13786.0 g 0 0 0 0 0 0 0 1223.0 150.0 21.0 43.0 48.0 126.0 t 0 0 0 0 0 0 0 1443.0 13360.0 13741.0 58.0 13943.0 205.0
MA0124.3_shift4 (Nkx3-1)				; oligos_6nt_mkv1_m1 versus MA0124.3 (Nkx3-1); m=6/14; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.54102; ----cCACTTA-- ; cor=; Ncor= a 0 0 0 0 981.0 0.0 5335.0 59.0 0.0 0.0 5335.0 0 0 c 0 0 0 0 5335.0 5335.0 28.0 5335.0 1.0 254.0 273.0 0 0 g 0 0 0 0 1776.0 10.0 10.0 9.0 0.0 0.0 173.0 0 0 t 0 0 0 0 275.0 336.0 88.0 9.0 5335.0 5335.0 523.0 0 0
MA0766.3_rc_shift6 (GATA5_rc)				; oligos_6nt_mkv1_m1 versus MA0766.3_rc (GATA5_rc); m=7/14; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.537429; ------ysTTATC ; cor=; Ncor= a 0 0 0 0 0 0 668.0 586.0 204.0 331.0 15369.0 0.0 0.0 c 0 0 0 0 0 0 8179.0 7774.0 200.0 0.0 0.0 0.0 15369.0 g 0 0 0 0 0 0 3215.0 7594.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 0 7190.0 212.0 15369.0 15369.0 0.0 15369.0 0.0
MA0767.2_rc_shift2 (GCM2_rc)				; oligos_6nt_mkv1_m1 versus MA0767.2_rc (GCM2_rc); m=8/14; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.497998; --rCCCGCAT--- ; cor=; Ncor= a 0 0 1320.0 0.0 13.0 66.0 127.0 0.0 1320.0 45.0 0 0 0 c 0 0 91.0 1320.0 1320.0 1320.0 138.0 1320.0 24.0 299.0 0 0 0 g 0 0 533.0 0.0 0.0 1.0 1320.0 32.0 41.0 77.0 0 0 0 t 0 0 92.0 1.0 0.0 51.0 84.0 263.0 23.0 1320.0 0 0 0
MA0035.5_shift7 (GATA1)				; oligos_6nt_mkv1_m1 versus MA0035.5 (GATA1); m=9/14; ncol2=7; w=0; offset=4; strand=D; shift=7; score=0.47893; -------CTWATC ; cor=; Ncor= a 0 0 0 0 0 0 0 3953.0 1314.0 49692.0 67550.0 2206.0 2567.0 c 0 0 0 0 0 0 0 62419.0 595.0 710.0 1292.0 1238.0 65937.0 g 0 0 0 0 0 0 0 2712.0 652.0 856.0 988.0 618.0 1471.0 t 0 0 0 0 0 0 0 2744.0 69267.0 20570.0 1998.0 67766.0 1853.0
MA0877.4_shift5 (BARHL1)				; oligos_6nt_mkv1_m1 versus MA0877.4 (BARHL1); m=10/14; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.47409; -----CGTTTA-- ; cor=; Ncor= a 0 0 0 0 0 202.0 833.0 281.0 0.0 96.0 3960.0 0 0 c 0 0 0 0 0 3960.0 34.0 223.0 4.0 9.0 16.0 0 0 g 0 0 0 0 0 3.0 3960.0 33.0 0.0 0.0 26.0 0 0 t 0 0 0 0 0 26.0 46.0 3960.0 3960.0 3960.0 125.0 0 0
MA0635.2_rc_shift5 (BARHL2_rc)				; oligos_6nt_mkv1_m1 versus MA0635.2_rc (BARHL2_rc); m=11/14; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.463612; -----CrTTTA-- ; cor=; Ncor= a 0 0 0 0 0 1335.0 7756.0 4032.0 0.0 1969.0 12855.0 0 0 c 0 0 0 0 0 12855.0 127.0 1086.0 0.0 0.0 0.0 0 0 g 0 0 0 0 0 0.0 12855.0 116.0 0.0 0.0 0.0 0 0 t 0 0 0 0 0 1570.0 443.0 12855.0 12855.0 12855.0 643.0 0 0
MA1122.2_rc_shift1 (TFDP1_rc)				; oligos_6nt_mkv1_m1 versus MA1122.2_rc (TFDP1_rc); m=12/14; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.433458; -TTCCCGCs---- ; cor=; Ncor= a 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 0 c 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 0 g 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 0 t 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0 0
MA0914.2_shift5 (ISL2)				; oligos_6nt_mkv1_m1 versus MA0914.2 (ISL2); m=13/14; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.425612; -----CAmTTA-- ; cor=; Ncor= a 0 0 0 0 0 160.0 5631.0 3161.0 218.0 278.0 5631.0 0 0 c 0 0 0 0 0 5631.0 162.0 5631.0 130.0 718.0 206.0 0 0 g 0 0 0 0 0 126.0 134.0 171.0 169.0 13.0 59.0 0 0 t 0 0 0 0 0 1019.0 248.0 398.0 5631.0 5631.0 1354.0 0 0
MA0646.2_rc_shift0 (GCM1_rc)				; oligos_6nt_mkv1_m1 versus MA0646.2_rc (GCM1_rc); m=14/14; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.417404; gtACCCGCAT--- ; cor=; Ncor= a 2409.0 2014.0 21439.0 10.0 35.0 3815.0 880.0 15.0 21439.0 261.0 0 0 0 c 4829.0 7971.0 147.0 21439.0 21439.0 21439.0 572.0 21439.0 96.0 4010.0 0 0 0 g 13412.0 2905.0 4992.0 18.0 4.0 255.0 21439.0 274.0 154.0 1811.0 0 0 0 t 789.0 21439.0 146.0 0.0 0.0 594.0 1002.0 4371.0 161.0 21439.0 0 0 0