compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2.tf file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt Output files alignments_1ton_html $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html match_table_txt $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab alignments_1ton $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab match_table_html $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html html_index $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html prefix $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2.tf file1 1 13 1 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_7nt_mkv1_m2 | MA0766.3 | oligos_7nt_mkv1_m2 | GATA5 | 0.809 | 0.498 | 13 | 8 | 8 | 13 | 0.6154 | 0.6154 | 1.0000 | D | 1 |
| oligos_7nt_mkv1_m2 | MA0036.4 | oligos_7nt_mkv1_m2 | GATA2 | 0.858 | 0.462 | 13 | 7 | 7 | 13 | 0.5385 | 0.5385 | 1.0000 | R | 1 |
| oligos_7nt_mkv1_m2 | MA1104.3 | oligos_7nt_mkv1_m2 | GATA6 | 0.747 | 0.460 | 13 | 8 | 8 | 13 | 0.6154 | 0.6154 | 1.0000 | R | 1 |
| oligos_7nt_mkv1_m2 | MA1970.2 | oligos_7nt_mkv1_m2 | TRPS1 | 0.744 | 0.458 | 13 | 8 | 8 | 13 | 0.6154 | 0.6154 | 1.0000 | R | 1 |
| oligos_7nt_mkv1_m2 | MA0482.3 | oligos_7nt_mkv1_m2 | GATA4 | 0.741 | 0.456 | 13 | 8 | 8 | 13 | 0.6154 | 0.6154 | 1.0000 | R | 1 |
| oligos_7nt_mkv1_m2 | MA0037.5 | oligos_7nt_mkv1_m2 | Gata3 | 0.736 | 0.453 | 13 | 8 | 8 | 13 | 0.6154 | 0.6154 | 1.0000 | R | 1 |
| oligos_7nt_mkv1_m2 | MA0124.3 | oligos_7nt_mkv1_m2 | Nkx3-1 | 0.773 | 0.416 | 13 | 7 | 7 | 13 | 0.5385 | 0.5385 | 1.0000 | R | 4 |
| oligos_7nt_mkv1_m2 | MA2097.1 | oligos_7nt_mkv1_m2 | ZNF75A | 0.715 | 0.402 | 13 | 12 | 9 | 16 | 0.5625 | 0.6923 | 0.7500 | R | -3 |
Host name rsat Job started 2026-02-26.234402 Job done 2026-02-26.234409 Seconds 1.49 user 1.5 system 0.34 cuser 4.99 ; csystem 0.41