One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m2/peak-motifs_oligos_7nt_mkv1_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m2_shift3 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m2_shift3 (oligos_7nt_mkv1_m2)
; oligos_7nt_mkv1_m2; m=0 (reference); ncol1=13; shift=3; ncol=16; ---GTGATAAGCGGGG ; Alignment reference a 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 g 0 0 0 1 0 1 0 0 0 0 1 0 1 1 1 1 t 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0

MA0766.3_shift4 (GATA5)
; oligos_7nt_mkv1_m2 versus MA0766.3 (GATA5); m=1/8; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.497949; ----wGATAAsr---- ; cor=; Ncor= a 0 0 0 0 8021.0 0.0 15369.0 0.0 15369.0 15369.0 212.0 7190.0 0 0 0 0 c 0 0 0 0 2328.0 0.0 0.0 0.0 0.0 0.0 7594.0 3215.0 0 0 0 0 g 0 0 0 0 52.0 15369.0 0.0 0.0 0.0 200.0 7774.0 8179.0 0 0 0 0 t 0 0 0 0 7348.0 0.0 0.0 15369.0 331.0 204.0 586.0 668.0 0 0 0 0

MA0036.4_rc_shift4 (GATA2_rc)
; oligos_7nt_mkv1_m2 versus MA0036.4_rc (GATA2_rc); m=2/8; ncol2=7; w=0; offset=1; strand=R; shift=4; score=0.462155; ----AGATAAG----- ; cor=; Ncor= a 0 0 0 0 10981.0 205.0 13943.0 58.0 13741.0 13360.0 1443.0 0 0 0 0 0 c 0 0 0 0 367.0 126.0 48.0 43.0 21.0 150.0 1223.0 0 0 0 0 0 g 0 0 0 0 492.0 13786.0 77.0 14.0 34.0 259.0 10607.0 0 0 0 0 0 t 0 0 0 0 2373.0 96.0 145.0 14098.0 417.0 444.0 940.0 0 0 0 0 0

MA1104.3_rc_shift4 (GATA6_rc)
; oligos_7nt_mkv1_m2 versus MA1104.3_rc (GATA6_rc); m=3/8; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.459932; ----AGATAAGA---- ; cor=; Ncor= a 0 0 0 0 61257.0 1706.0 76629.0 1124.0 72392.0 74865.0 5514.0 54635.0 0 0 0 0 c 0 0 0 0 1810.0 712.0 456.0 819.0 615.0 580.0 6459.0 7066.0 0 0 0 0 g 0 0 0 0 3228.0 75930.0 852.0 815.0 1393.0 1439.0 62936.0 11831.0 0 0 0 0 t 0 0 0 0 13149.0 1096.0 1507.0 76686.0 5044.0 2560.0 4535.0 5912.0 0 0 0 0

MA1970.2_rc_shift4 (TRPS1_rc)
; oligos_7nt_mkv1_m2 versus MA1970.2_rc (TRPS1_rc); m=4/8; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.45766; ----AGATAAGA---- ; cor=; Ncor= a 0 0 0 0 13985.0 622.0 17527.0 299.0 16498.0 16758.0 1654.0 12628.0 0 0 0 0 c 0 0 0 0 716.0 263.0 179.0 329.0 449.0 320.0 1426.0 1749.0 0 0 0 0 g 0 0 0 0 792.0 17146.0 265.0 215.0 462.0 560.0 14262.0 2547.0 0 0 0 0 t 0 0 0 0 2790.0 252.0 312.0 17440.0 874.0 645.0 941.0 1359.0 0 0 0 0

MA0482.3_rc_shift4 (GATA4_rc)
; oligos_7nt_mkv1_m2 versus MA0482.3_rc (GATA4_rc); m=5/8; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.455887; ----AGATAAGg---- ; cor=; Ncor= a 0 0 0 0 48187.0 1422.0 57123.0 1646.0 55179.0 55250.0 4699.0 11649.0 0 0 0 0 c 0 0 0 0 1376.0 568.0 539.0 1245.0 808.0 749.0 1103.0 5099.0 0 0 0 0 g 0 0 0 0 1792.0 56544.0 582.0 1703.0 1377.0 1429.0 50062.0 38289.0 0 0 0 0 t 0 0 0 0 7659.0 480.0 770.0 54420.0 1650.0 1586.0 3150.0 3977.0 0 0 0 0

MA0037.5_rc_shift4 (Gata3_rc)
; oligos_7nt_mkv1_m2 versus MA0037.5_rc (Gata3_rc); m=6/8; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.453128; ----AGATAAGa---- ; cor=; Ncor= a 0 0 0 0 20257.0 480.0 23868.0 800.0 22166.0 22866.0 2055.0 16442.0 0 0 0 0 c 0 0 0 0 608.0 255.0 291.0 528.0 960.0 280.0 2165.0 2551.0 0 0 0 0 g 0 0 0 0 903.0 23839.0 282.0 566.0 758.0 928.0 19702.0 3859.0 0 0 0 0 t 0 0 0 0 3100.0 294.0 427.0 22974.0 984.0 794.0 946.0 2016.0 0 0 0 0

MA0124.3_rc_shift7 (Nkx3-1_rc)
; oligos_7nt_mkv1_m2 versus MA0124.3_rc (Nkx3-1_rc); m=7/8; ncol2=7; w=0; offset=4; strand=R; shift=7; score=0.416169; -------TAAGTGg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 523.0 5335.0 5335.0 9.0 88.0 336.0 275.0 0 0 c 0 0 0 0 0 0 0 173.0 0.0 0.0 9.0 10.0 10.0 1776.0 0 0 g 0 0 0 0 0 0 0 273.0 254.0 1.0 5335.0 28.0 5335.0 5335.0 0 0 t 0 0 0 0 0 0 0 5335.0 0.0 0.0 59.0 5335.0 0.0 981.0 0 0

MA2097.1_rc_shift0 (ZNF75A_rc)
; oligos_7nt_mkv1_m2 versus MA2097.1_rc (ZNF75A_rc); m=8/8; ncol2=12; w=-3; offset=-3; strand=R; shift=0; score=0.402049; tGTGGGAAAAgC---- ; cor=; Ncor= a 174.0 0.0 7.0 0.0 44.0 19.0 1331.0 1331.0 1331.0 1331.0 61.0 259.0 0 0 0 0 c 253.0 0.0 7.0 0.0 7.0 0.0 0.0 149.0 0.0 27.0 426.0 1331.0 0 0 0 0 g 333.0 1331.0 9.0 1331.0 1331.0 1331.0 1.0 174.0 1.0 122.0 1331.0 147.0 0 0 0 0 t 998.0 4.0 1331.0 1.0 165.0 0.0 2.0 109.0 0.0 57.0 498.0 133.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m2_shift3 (oligos_7nt_mkv1_m2)				; oligos_7nt_mkv1_m2; m=0 (reference); ncol1=13; shift=3; ncol=16; ---GTGATAAGCGGGG ; Alignment reference a 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 g 0 0 0 1 0 1 0 0 0 0 1 0 1 1 1 1 t 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0
MA0766.3_shift4 (GATA5)				; oligos_7nt_mkv1_m2 versus MA0766.3 (GATA5); m=1/8; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.497949; ----wGATAAsr---- ; cor=; Ncor= a 0 0 0 0 8021.0 0.0 15369.0 0.0 15369.0 15369.0 212.0 7190.0 0 0 0 0 c 0 0 0 0 2328.0 0.0 0.0 0.0 0.0 0.0 7594.0 3215.0 0 0 0 0 g 0 0 0 0 52.0 15369.0 0.0 0.0 0.0 200.0 7774.0 8179.0 0 0 0 0 t 0 0 0 0 7348.0 0.0 0.0 15369.0 331.0 204.0 586.0 668.0 0 0 0 0
MA0036.4_rc_shift4 (GATA2_rc)				; oligos_7nt_mkv1_m2 versus MA0036.4_rc (GATA2_rc); m=2/8; ncol2=7; w=0; offset=1; strand=R; shift=4; score=0.462155; ----AGATAAG----- ; cor=; Ncor= a 0 0 0 0 10981.0 205.0 13943.0 58.0 13741.0 13360.0 1443.0 0 0 0 0 0 c 0 0 0 0 367.0 126.0 48.0 43.0 21.0 150.0 1223.0 0 0 0 0 0 g 0 0 0 0 492.0 13786.0 77.0 14.0 34.0 259.0 10607.0 0 0 0 0 0 t 0 0 0 0 2373.0 96.0 145.0 14098.0 417.0 444.0 940.0 0 0 0 0 0
MA1104.3_rc_shift4 (GATA6_rc)				; oligos_7nt_mkv1_m2 versus MA1104.3_rc (GATA6_rc); m=3/8; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.459932; ----AGATAAGA---- ; cor=; Ncor= a 0 0 0 0 61257.0 1706.0 76629.0 1124.0 72392.0 74865.0 5514.0 54635.0 0 0 0 0 c 0 0 0 0 1810.0 712.0 456.0 819.0 615.0 580.0 6459.0 7066.0 0 0 0 0 g 0 0 0 0 3228.0 75930.0 852.0 815.0 1393.0 1439.0 62936.0 11831.0 0 0 0 0 t 0 0 0 0 13149.0 1096.0 1507.0 76686.0 5044.0 2560.0 4535.0 5912.0 0 0 0 0
MA1970.2_rc_shift4 (TRPS1_rc)				; oligos_7nt_mkv1_m2 versus MA1970.2_rc (TRPS1_rc); m=4/8; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.45766; ----AGATAAGA---- ; cor=; Ncor= a 0 0 0 0 13985.0 622.0 17527.0 299.0 16498.0 16758.0 1654.0 12628.0 0 0 0 0 c 0 0 0 0 716.0 263.0 179.0 329.0 449.0 320.0 1426.0 1749.0 0 0 0 0 g 0 0 0 0 792.0 17146.0 265.0 215.0 462.0 560.0 14262.0 2547.0 0 0 0 0 t 0 0 0 0 2790.0 252.0 312.0 17440.0 874.0 645.0 941.0 1359.0 0 0 0 0
MA0482.3_rc_shift4 (GATA4_rc)				; oligos_7nt_mkv1_m2 versus MA0482.3_rc (GATA4_rc); m=5/8; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.455887; ----AGATAAGg---- ; cor=; Ncor= a 0 0 0 0 48187.0 1422.0 57123.0 1646.0 55179.0 55250.0 4699.0 11649.0 0 0 0 0 c 0 0 0 0 1376.0 568.0 539.0 1245.0 808.0 749.0 1103.0 5099.0 0 0 0 0 g 0 0 0 0 1792.0 56544.0 582.0 1703.0 1377.0 1429.0 50062.0 38289.0 0 0 0 0 t 0 0 0 0 7659.0 480.0 770.0 54420.0 1650.0 1586.0 3150.0 3977.0 0 0 0 0
MA0037.5_rc_shift4 (Gata3_rc)				; oligos_7nt_mkv1_m2 versus MA0037.5_rc (Gata3_rc); m=6/8; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.453128; ----AGATAAGa---- ; cor=; Ncor= a 0 0 0 0 20257.0 480.0 23868.0 800.0 22166.0 22866.0 2055.0 16442.0 0 0 0 0 c 0 0 0 0 608.0 255.0 291.0 528.0 960.0 280.0 2165.0 2551.0 0 0 0 0 g 0 0 0 0 903.0 23839.0 282.0 566.0 758.0 928.0 19702.0 3859.0 0 0 0 0 t 0 0 0 0 3100.0 294.0 427.0 22974.0 984.0 794.0 946.0 2016.0 0 0 0 0
MA0124.3_rc_shift7 (Nkx3-1_rc)				; oligos_7nt_mkv1_m2 versus MA0124.3_rc (Nkx3-1_rc); m=7/8; ncol2=7; w=0; offset=4; strand=R; shift=7; score=0.416169; -------TAAGTGg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 523.0 5335.0 5335.0 9.0 88.0 336.0 275.0 0 0 c 0 0 0 0 0 0 0 173.0 0.0 0.0 9.0 10.0 10.0 1776.0 0 0 g 0 0 0 0 0 0 0 273.0 254.0 1.0 5335.0 28.0 5335.0 5335.0 0 0 t 0 0 0 0 0 0 0 5335.0 0.0 0.0 59.0 5335.0 0.0 981.0 0 0
MA2097.1_rc_shift0 (ZNF75A_rc)				; oligos_7nt_mkv1_m2 versus MA2097.1_rc (ZNF75A_rc); m=8/8; ncol2=12; w=-3; offset=-3; strand=R; shift=0; score=0.402049; tGTGGGAAAAgC---- ; cor=; Ncor= a 174.0 0.0 7.0 0.0 44.0 19.0 1331.0 1331.0 1331.0 1331.0 61.0 259.0 0 0 0 0 c 253.0 0.0 7.0 0.0 7.0 0.0 0.0 149.0 0.0 27.0 426.0 1331.0 0 0 0 0 g 333.0 1331.0 9.0 1331.0 1331.0 1331.0 1.0 174.0 1.0 122.0 1331.0 147.0 0 0 0 0 t 998.0 4.0 1331.0 1.0 165.0 0.0 2.0 109.0 0.0 57.0 498.0 133.0 0 0 0 0