/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3.tf
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m3/peak-motifs_oligos_7nt_mkv1_m3.tf
		file1	1	11	5
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv1_m3 MA0599.1 oligos_7nt_mkv1_m3 KLF5 0.707 0.643 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv1_m3 MA0742.2 oligos_7nt_mkv1_m3 KLF12 0.769 0.629 11 9 9 11 0.8182 0.8182 1.0000 R 2
oligos_7nt_mkv1_m3 MA2125.1 oligos_7nt_mkv1_m3 Zfp809 0.766 0.627 11 9 9 11 0.8182 0.8182 1.0000 D 0
oligos_7nt_mkv1_m3 MA0740.2 oligos_7nt_mkv1_m3 KLF14 0.742 0.607 11 9 9 11 0.8182 0.8182 1.0000 R 2
oligos_7nt_mkv1_m3 MA0685.2 oligos_7nt_mkv1_m3 SP4 0.740 0.605 11 9 9 11 0.8182 0.8182 1.0000 R 2
oligos_7nt_mkv1_m3 MA0516.3 oligos_7nt_mkv1_m3 SP2 0.739 0.605 11 9 9 11 0.8182 0.8182 1.0000 R 2
oligos_7nt_mkv1_m3 MA0597.3 oligos_7nt_mkv1_m3 THAP1 0.814 0.592 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_7nt_mkv1_m3 MA1513.2 oligos_7nt_mkv1_m3 KLF15 0.811 0.590 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv1_m3 MA1511.2 oligos_7nt_mkv1_m3 KLF10 0.716 0.586 11 9 9 11 0.8182 0.8182 1.0000 R 2
oligos_7nt_mkv1_m3 MA1961.2 oligos_7nt_mkv1_m3 PATZ1 0.701 0.584 11 11 10 12 0.8333 0.9091 0.9091 R 1
oligos_7nt_mkv1_m3 MA1959.2 oligos_7nt_mkv1_m3 KLF7 0.784 0.570 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv1_m3 MA0493.3 oligos_7nt_mkv1_m3 KLF1 0.766 0.557 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv1_m3 MA2341.1 oligos_7nt_mkv1_m3 FEZF2 0.761 0.554 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv1_m3 MA1102.3 oligos_7nt_mkv1_m3 CTCFL 0.771 0.450 11 8 7 12 0.5833 0.6364 0.8750 R -1
oligos_7nt_mkv1_m3 MA0670.2 oligos_7nt_mkv1_m3 NFIA 0.747 0.408 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv1_m3 MA1965.2 oligos_7nt_mkv1_m3 SP5 0.741 0.404 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv1_m3 MA0738.2 oligos_7nt_mkv1_m3 HIC2 0.739 0.403 11 6 6 11 0.5455 0.5455 1.0000 D 4
oligos_7nt_mkv1_m3 MA2337.1 oligos_7nt_mkv1_m3 Nr1h3 0.738 0.402 11 6 6 11 0.5455 0.5455 1.0000 R 5 
 Host name	rsat
 Job started	2026-02-26.234410
 Job done	2026-02-26.234417
 Seconds	1.25
	user	1.25
	system	0.35
	cuser	4.99
;	csystem	0.59