One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m4/peak-motifs_oligos_7nt_mkv1_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m4/peak-motifs_oligos_7nt_mkv1_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m4_shift2 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv1_m4_shift2 (oligos_7nt_mkv1_m4) |
 |
|
|
; oligos_7nt_mkv1_m4; m=0 (reference); ncol1=15; shift=2; ncol=17; --TCTCCATAACACAAG
; Alignment reference
a 0 0 0 0 0 0 0 1 0 1 1 0 1 0 1 1 0
c 0 0 0 1 0 1 1 0 0 0 0 1 0 1 0 0 0
g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
t 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0
|
| MA1579.2_shift3 (ZBTB26) |
 |
|
|
; oligos_7nt_mkv1_m4 versus MA1579.2 (ZBTB26); m=1/2; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.417372; ---cTCCAGAA------
; cor=; Ncor=
a 0 0 0 274.0 9.0 20.0 5.0 1535.0 27.0 1582.0 1134.0 0 0 0 0 0 0
c 0 0 0 872.0 5.0 1592.0 1503.0 17.0 3.0 22.0 138.0 0 0 0 0 0 0
g 0 0 0 123.0 5.0 12.0 13.0 49.0 1581.0 9.0 223.0 0 0 0 0 0 0
t 0 0 0 358.0 1608.0 3.0 106.0 26.0 16.0 14.0 132.0 0 0 0 0 0 0
|
| MA1999.2_shift0 (Prdm5) |
 |
|
|
; oligos_7nt_mkv1_m4 versus MA1999.2 (Prdm5); m=2/2; ncol2=11; w=-2; offset=-2; strand=D; shift=0; score=0.403141; GTTCTCCATCt------
; cor=; Ncor=
a 36.0 59.0 18.0 20.0 39.0 16.0 22.0 575.0 18.0 43.0 88.0 0 0 0 0 0 0
c 60.0 86.0 43.0 677.0 31.0 677.0 685.0 81.0 59.0 518.0 145.0 0 0 0 0 0 0
g 580.0 50.0 37.0 13.0 20.0 30.0 18.0 40.0 128.0 86.0 67.0 0 0 0 0 0 0
t 64.0 545.0 642.0 30.0 650.0 17.0 15.0 44.0 535.0 93.0 440.0 0 0 0 0 0 0
|