One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m5/peak-motifs_oligos_7nt_mkv1_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/oligos_7nt_mkv1_m5/peak-motifs_oligos_7nt_mkv1_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m5_shift2 ; 17 matrices ; sort_field=Ncor

Matrix nameAligned logoscor Ncor Aligned matrices
oligos_7nt_mkv1_m5_shift2 (oligos_7nt_mkv1_m5)    
; oligos_7nt_mkv1_m5; m=0 (reference); ncol1=11; shift=2; ncol=13; --AGCGGGGTAGG
; Alignment reference
a	0	0	1	0	0	0	0	0	0	0	1	0	0
c	0	0	0	0	1	0	0	0	0	0	0	0	0
g	0	0	0	1	0	1	1	1	1	0	0	1	1
t	0	0	0	0	0	0	0	0	0	1	0	0	0
MA1627.2_rc_shift3 (Wt1_rc)
; oligos_7nt_mkv1_m5 versus MA1627.2_rc (Wt1_rc); m=1/16; ncol2=10; w=0; offset=1; strand=R; shift=3; score=0.673099; ---GTGGGGGAGg
; cor=; Ncor=
a	0	0	0	348.0	354.0	41.0	104.0	276.0	222.0	26.0	4183.0	39.0	500.0
c	0	0	0	436.0	990.0	46.0	101.0	120.0	75.0	42.0	319.0	58.0	404.0
g	0	0	0	3749.0	53.0	4573.0	3636.0	4252.0	4354.0	4602.0	69.0	4546.0	2948.0
t	0	0	0	158.0	3294.0	31.0	850.0	43.0	40.0	21.0	120.0	48.0	839.0
MA1630.3_shift5 (ZNF281)
; oligos_7nt_mkv1_m5 versus MA1630.3 (ZNF281); m=2/16; ncol2=10; w=0; offset=3; strand=D; shift=5; score=0.49527; -----GGGGGAGG
; cor=; Ncor=
a	0	0	0	0	0	1.0	1.0	35.0	1.0	1.0	720.0	122.0	1.0
c	0	0	0	0	0	1.0	1.0	1.0	1.0	1.0	183.0	1.0	1.0
g	0	0	0	0	0	998.0	998.0	963.0	998.0	998.0	1.0	772.0	998.0
t	0	0	0	0	0	1.0	1.0	1.0	1.0	1.0	96.0	105.0	1.0
MA1717.2_rc_shift6 (ZNF784_rc)
; oligos_7nt_mkv1_m5 versus MA1717.2_rc (ZNF784_rc); m=3/16; ncol2=8; w=0; offset=4; strand=R; shift=6; score=0.48931; ------cGGTArG
; cor=; Ncor=
a	0	0	0	0	0	0	1746.0	154.0	124.0	22.0	6529.0	2182.0	69.0
c	0	0	0	0	0	0	4783.0	555.0	10.0	42.0	96.0	77.0	0.0
g	0	0	0	0	0	0	559.0	6529.0	6529.0	35.0	229.0	4347.0	6529.0
t	0	0	0	0	0	0	680.0	135.0	39.0	6529.0	206.0	71.0	26.0
MA1653.2_rc_shift5 (ZNF148_rc)
; oligos_7nt_mkv1_m5 versus MA1653.2_rc (ZNF148_rc); m=4/16; ncol2=10; w=0; offset=3; strand=R; shift=5; score=0.478274; -----ggGGGAGG
; cor=; Ncor=
a	0	0	0	0	0	1180.0	1190.0	1082.0	465.0	67.0	10040.0	66.0	136.0
c	0	0	0	0	0	2064.0	1924.0	392.0	460.0	112.0	1012.0	211.0	401.0
g	0	0	0	0	0	7114.0	7239.0	9283.0	9922.0	10954.0	14.0	10833.0	10526.0
t	0	0	0	0	0	841.0	846.0	442.0	352.0	66.0	133.0	89.0	136.0
MA0039.5_rc_shift6 (KLF4_rc)
; oligos_7nt_mkv1_m5 versus MA0039.5_rc (KLF4_rc); m=5/16; ncol2=8; w=0; offset=4; strand=R; shift=6; score=0.45908; ------GGGTGGG
; cor=; Ncor=
a	0	0	0	0	0	0	2565.0	1218.0	1129.0	3456.0	976.0	1969.0	4633.0
c	0	0	0	0	0	0	1005.0	1870.0	1470.0	6598.0	793.0	1422.0	1214.0
g	0	0	0	0	0	0	51045.0	51112.0	52366.0	161.0	52875.0	45405.0	47865.0
t	0	0	0	0	0	0	1202.0	1617.0	852.0	45602.0	1173.0	7021.0	2105.0
MA1513.2_rc_shift1 (KLF15_rc)
; oligos_7nt_mkv1_m5 versus MA1513.2_rc (KLF15_rc); m=6/16; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score=0.453902; -GGGCGGGg----
; cor=; Ncor=
a	0	3.0	1.0	11.0	0.0	0.0	3.0	9.0	1809.0	0	0	0	0
c	0	100.0	359.0	2.0	11369.0	1.0	333.0	86.0	2117.0	0	0	0	0
g	0	11254.0	10954.0	11345.0	0.0	11368.0	10940.0	11234.0	6506.0	0	0	0	0
t	0	12.0	55.0	11.0	0.0	0.0	93.0	40.0	937.0	0	0	0	0
MA1959.2_shift1 (KLF7)
; oligos_7nt_mkv1_m5 versus MA1959.2 (KLF7); m=7/16; ncol2=8; w=-1; offset=-1; strand=D; shift=1; score=0.435839; -GGGCGKgG----
; cor=; Ncor=
a	0	1.0	1.0	1.0	45.0	1.0	1.0	150.0	1.0	0	0	0	0
c	0	1.0	1.0	1.0	788.0	1.0	25.0	42.0	1.0	0	0	0	0
g	0	997.0	997.0	997.0	1.0	997.0	720.0	642.0	997.0	0	0	0	0
t	0	1.0	1.0	1.0	167.0	1.0	254.0	167.0	1.0	0	0	0	0
MA0493.3_shift1 (KLF1)
; oligos_7nt_mkv1_m5 versus MA0493.3 (KLF1); m=8/16; ncol2=8; w=-1; offset=-1; strand=D; shift=1; score=0.424739; -GGGyGkGG----
; cor=; Ncor=
a	0	1.0	1.0	1.0	125.0	1.0	1.0	82.0	1.0	0	0	0	0
c	0	1.0	1.0	1.0	529.0	1.0	1.0	1.0	1.0	0	0	0	0
g	0	998.0	998.0	998.0	1.0	998.0	675.0	896.0	998.0	0	0	0	0
t	0	1.0	1.0	1.0	346.0	1.0	324.0	21.0	1.0	0	0	0	0
MA1965.2_rc_shift7 (SP5_rc)
; oligos_7nt_mkv1_m5 versus MA1965.2_rc (SP5_rc); m=9/16; ncol2=6; w=0; offset=5; strand=R; shift=7; score=0.423395; -------GGGAGG
; cor=; Ncor=
a	0	0	0	0	0	0	0	0.0	0.0	0.0	20465.0	0.0	4.0
c	0	0	0	0	0	0	0	92.0	234.0	0.0	231.0	403.0	3.0
g	0	0	0	0	0	0	0	20604.0	20451.0	20649.0	0.0	20286.0	20683.0
t	0	0	0	0	0	0	0	0.0	11.0	47.0	0.0	7.0	6.0
MA0742.2_shift0 (KLF12)
; oligos_7nt_mkv1_m5 versus MA0742.2 (KLF12); m=10/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.422375; GGGGCGGGG----
; cor=; Ncor=
a	101.948	86.3636	0.649351	0.649351	47.4026	0.649351	5.84416	68.1818	0.649351	0	0	0	0
c	0.649351	0.649351	0.649351	0.649351	951.299	0.649351	78.5714	0.649351	0.649351	0	0	0	0
g	709.74	912.338	998.052	998.052	0.649351	998.052	725.325	930.519	969.481	0	0	0	0
t	187.662	0.649351	0.649351	0.649351	0.649351	0.649351	190.26	0.649351	29.2208	0	0	0	0
MA1578.2_rc_shift3 (VEZF1_rc)
; oligos_7nt_mkv1_m5 versus MA1578.2_rc (VEZF1_rc); m=11/16; ncol2=6; w=0; offset=1; strand=R; shift=3; score=0.415686; ---GGGGGG----
; cor=; Ncor=
a	0	0	0	8.0	4.0	0.0	0.0	0.0	0.0	0	0	0	0
c	0	0	0	3.0	0.0	0.0	0.0	0.0	137.0	0	0	0	0
g	0	0	0	977.0	989.0	997.0	995.0	997.0	790.0	0	0	0	0
t	0	0	0	10.0	6.0	2.0	4.0	1.0	71.0	0	0	0	0
MA1511.2_shift0 (KLF10)
; oligos_7nt_mkv1_m5 versus MA1511.2 (KLF10); m=12/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.411659; GGGGCGKGG----
; cor=; Ncor=
a	75.2427	0.809061	0.809061	0.809061	42.8803	0.809061	0.809061	65.534	65.534	0	0	0	0
c	0.809061	0.809061	0.809061	0.809061	803.398	0.809061	52.589	0.809061	0.809061	0	0	0	0
g	819.579	997.573	997.573	997.573	0.809061	997.573	693.366	906.958	884.304	0	0	0	0
t	104.369	0.809061	0.809061	0.809061	152.913	0.809061	253.236	26.699	49.3528	0	0	0	0
MA0516.3_shift0 (SP2)
; oligos_7nt_mkv1_m5 versus MA0516.3 (SP2); m=13/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.411654; GGGGCGGGg----
; cor=; Ncor=
a	153.226	167.889	0.733138	0.733138	112.17	0.733138	0.733138	120.968	206.012	0	0	0	0
c	0.733138	0.733138	0.733138	0.733138	886.364	0.733138	0.733138	0.733138	164.956	0	0	0	0
g	766.129	830.645	997.801	997.801	0.733138	997.801	974.34	877.566	610.704	0	0	0	0
t	79.912	0.733138	0.733138	0.733138	0.733138	0.733138	24.1935	0.733138	18.3284	0	0	0	0
MA0685.2_shift0 (SP4)
; oligos_7nt_mkv1_m5 versus MA0685.2 (SP4); m=14/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.406527; gGGGMGGrG----
; cor=; Ncor=
a	149.038	0.686813	0.686813	0.686813	275.412	0.686813	0.686813	289.148	0.686813	0	0	0	0
c	0.686813	0.686813	0.686813	0.686813	723.214	0.686813	0.686813	0.686813	0.686813	0	0	0	0
g	654.533	997.94	997.94	997.94	0.686813	997.94	921.016	660.027	997.94	0	0	0	0
t	195.742	0.686813	0.686813	0.686813	0.686813	0.686813	77.6099	50.1374	0.686813	0	0	0	0
MA0740.2_shift0 (KLF14)
; oligos_7nt_mkv1_m5 versus MA0740.2 (KLF14); m=15/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.405247; kGGGCGKGG----
; cor=; Ncor=
a	31.158	0.635877	0.635877	0.635877	94.9046	0.635877	0.635877	107.705	198.614	0	0	0	0
c	0.635877	0.635877	0.635877	0.635877	814.392	0.635877	0.635877	0.635877	62.0884	0	0	0	0
g	619.525	998.092	998.092	998.092	0.635877	998.092	717.898	891.023	738.662	0	0	0	0
t	348.681	0.635877	0.635877	0.635877	90.067	0.635877	280.83	0.635877	0.635877	0	0	0	0
MA0079.5_shift0 (SP1)
; oligos_7nt_mkv1_m5 versus MA0079.5 (SP1); m=16/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.402406; GGGGMGGrG----
; cor=; Ncor=
a	1.05485	1.05485	1.05485	1.05485	266.878	1.05485	1.05485	254.219	161.392	0	0	0	0
c	1.05485	1.05485	1.05485	1.05485	731.013	1.05485	85.443	51.6878	1.05485	0	0	0	0
g	950.422	996.835	996.835	996.835	1.05485	996.835	912.447	659.283	836.498	0	0	0	0
t	47.4684	1.05485	1.05485	1.05485	1.05485	1.05485	1.05485	34.8101	1.05485	0	0	0	0