One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m5_shift2 ; 17 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m5_shift2 (oligos_7nt_mkv1_m5)
; oligos_7nt_mkv1_m5; m=0 (reference); ncol1=11; shift=2; ncol=13; --AGCGGGGTAGG ; Alignment reference a 0 0 1 0 0 0 0 0 0 0 1 0 0 c 0 0 0 0 1 0 0 0 0 0 0 0 0 g 0 0 0 1 0 1 1 1 1 0 0 1 1 t 0 0 0 0 0 0 0 0 0 1 0 0 0

MA1627.2_rc_shift3 (Wt1_rc)
; oligos_7nt_mkv1_m5 versus MA1627.2_rc (Wt1_rc); m=1/16; ncol2=10; w=0; offset=1; strand=R; shift=3; score=0.673099; ---GTGGGGGAGg ; cor=; Ncor= a 0 0 0 348.0 354.0 41.0 104.0 276.0 222.0 26.0 4183.0 39.0 500.0 c 0 0 0 436.0 990.0 46.0 101.0 120.0 75.0 42.0 319.0 58.0 404.0 g 0 0 0 3749.0 53.0 4573.0 3636.0 4252.0 4354.0 4602.0 69.0 4546.0 2948.0 t 0 0 0 158.0 3294.0 31.0 850.0 43.0 40.0 21.0 120.0 48.0 839.0

MA1630.3_shift5 (ZNF281)
; oligos_7nt_mkv1_m5 versus MA1630.3 (ZNF281); m=2/16; ncol2=10; w=0; offset=3; strand=D; shift=5; score=0.49527; -----GGGGGAGG ; cor=; Ncor= a 0 0 0 0 0 1.0 1.0 35.0 1.0 1.0 720.0 122.0 1.0 c 0 0 0 0 0 1.0 1.0 1.0 1.0 1.0 183.0 1.0 1.0 g 0 0 0 0 0 998.0 998.0 963.0 998.0 998.0 1.0 772.0 998.0 t 0 0 0 0 0 1.0 1.0 1.0 1.0 1.0 96.0 105.0 1.0

MA1717.2_rc_shift6 (ZNF784_rc)
; oligos_7nt_mkv1_m5 versus MA1717.2_rc (ZNF784_rc); m=3/16; ncol2=8; w=0; offset=4; strand=R; shift=6; score=0.48931; ------cGGTArG ; cor=; Ncor= a 0 0 0 0 0 0 1746.0 154.0 124.0 22.0 6529.0 2182.0 69.0 c 0 0 0 0 0 0 4783.0 555.0 10.0 42.0 96.0 77.0 0.0 g 0 0 0 0 0 0 559.0 6529.0 6529.0 35.0 229.0 4347.0 6529.0 t 0 0 0 0 0 0 680.0 135.0 39.0 6529.0 206.0 71.0 26.0

MA1653.2_rc_shift5 (ZNF148_rc)
; oligos_7nt_mkv1_m5 versus MA1653.2_rc (ZNF148_rc); m=4/16; ncol2=10; w=0; offset=3; strand=R; shift=5; score=0.478274; -----ggGGGAGG ; cor=; Ncor= a 0 0 0 0 0 1180.0 1190.0 1082.0 465.0 67.0 10040.0 66.0 136.0 c 0 0 0 0 0 2064.0 1924.0 392.0 460.0 112.0 1012.0 211.0 401.0 g 0 0 0 0 0 7114.0 7239.0 9283.0 9922.0 10954.0 14.0 10833.0 10526.0 t 0 0 0 0 0 841.0 846.0 442.0 352.0 66.0 133.0 89.0 136.0

MA0039.5_rc_shift6 (KLF4_rc)
; oligos_7nt_mkv1_m5 versus MA0039.5_rc (KLF4_rc); m=5/16; ncol2=8; w=0; offset=4; strand=R; shift=6; score=0.45908; ------GGGTGGG ; cor=; Ncor= a 0 0 0 0 0 0 2565.0 1218.0 1129.0 3456.0 976.0 1969.0 4633.0 c 0 0 0 0 0 0 1005.0 1870.0 1470.0 6598.0 793.0 1422.0 1214.0 g 0 0 0 0 0 0 51045.0 51112.0 52366.0 161.0 52875.0 45405.0 47865.0 t 0 0 0 0 0 0 1202.0 1617.0 852.0 45602.0 1173.0 7021.0 2105.0

MA1513.2_rc_shift1 (KLF15_rc)
; oligos_7nt_mkv1_m5 versus MA1513.2_rc (KLF15_rc); m=6/16; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score=0.453902; -GGGCGGGg---- ; cor=; Ncor= a 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 0 0 0 0 c 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 0 0 0 0 g 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 0 0 0 0 t 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 0 0 0 0

MA1959.2_shift1 (KLF7)
; oligos_7nt_mkv1_m5 versus MA1959.2 (KLF7); m=7/16; ncol2=8; w=-1; offset=-1; strand=D; shift=1; score=0.435839; -GGGCGKgG---- ; cor=; Ncor= a 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 1.0 0 0 0 0 c 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 1.0 0 0 0 0 g 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 997.0 0 0 0 0 t 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0 1.0 0 0 0 0

MA0493.3_shift1 (KLF1)
; oligos_7nt_mkv1_m5 versus MA0493.3 (KLF1); m=8/16; ncol2=8; w=-1; offset=-1; strand=D; shift=1; score=0.424739; -GGGyGkGG---- ; cor=; Ncor= a 0 1.0 1.0 1.0 125.0 1.0 1.0 82.0 1.0 0 0 0 0 c 0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 1.0 0 0 0 0 g 0 998.0 998.0 998.0 1.0 998.0 675.0 896.0 998.0 0 0 0 0 t 0 1.0 1.0 1.0 346.0 1.0 324.0 21.0 1.0 0 0 0 0

MA1965.2_rc_shift7 (SP5_rc)
; oligos_7nt_mkv1_m5 versus MA1965.2_rc (SP5_rc); m=9/16; ncol2=6; w=0; offset=5; strand=R; shift=7; score=0.423395; -------GGGAGG ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 0.0 0.0 20465.0 0.0 4.0 c 0 0 0 0 0 0 0 92.0 234.0 0.0 231.0 403.0 3.0 g 0 0 0 0 0 0 0 20604.0 20451.0 20649.0 0.0 20286.0 20683.0 t 0 0 0 0 0 0 0 0.0 11.0 47.0 0.0 7.0 6.0

MA0742.2_shift0 (KLF12)
; oligos_7nt_mkv1_m5 versus MA0742.2 (KLF12); m=10/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.422375; GGGGCGGGG---- ; cor=; Ncor= a 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 0.649351 0 0 0 0 c 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 0.649351 0 0 0 0 g 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 969.481 0 0 0 0 t 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351 29.2208 0 0 0 0

MA1578.2_rc_shift3 (VEZF1_rc)
; oligos_7nt_mkv1_m5 versus MA1578.2_rc (VEZF1_rc); m=11/16; ncol2=6; w=0; offset=1; strand=R; shift=3; score=0.415686; ---GGGGGG---- ; cor=; Ncor= a 0 0 0 8.0 4.0 0.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 3.0 0.0 0.0 0.0 0.0 137.0 0 0 0 0 g 0 0 0 977.0 989.0 997.0 995.0 997.0 790.0 0 0 0 0 t 0 0 0 10.0 6.0 2.0 4.0 1.0 71.0 0 0 0 0

MA1511.2_shift0 (KLF10)
; oligos_7nt_mkv1_m5 versus MA1511.2 (KLF10); m=12/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.411659; GGGGCGKGG---- ; cor=; Ncor= a 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 65.534 0 0 0 0 c 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 0.809061 0 0 0 0 g 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 884.304 0 0 0 0 t 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699 49.3528 0 0 0 0

MA0516.3_shift0 (SP2)
; oligos_7nt_mkv1_m5 versus MA0516.3 (SP2); m=13/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.411654; GGGGCGGGg---- ; cor=; Ncor= a 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 206.012 0 0 0 0 c 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 164.956 0 0 0 0 g 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 610.704 0 0 0 0 t 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138 18.3284 0 0 0 0

MA0685.2_shift0 (SP4)
; oligos_7nt_mkv1_m5 versus MA0685.2 (SP4); m=14/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.406527; gGGGMGGrG---- ; cor=; Ncor= a 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 0.686813 0 0 0 0 c 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 0 g 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 997.94 0 0 0 0 t 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374 0.686813 0 0 0 0

MA0740.2_shift0 (KLF14)
; oligos_7nt_mkv1_m5 versus MA0740.2 (KLF14); m=15/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.405247; kGGGCGKGG---- ; cor=; Ncor= a 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 198.614 0 0 0 0 c 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 62.0884 0 0 0 0 g 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 738.662 0 0 0 0 t 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877 0.635877 0 0 0 0

MA0079.5_shift0 (SP1)
; oligos_7nt_mkv1_m5 versus MA0079.5 (SP1); m=16/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.402406; GGGGMGGrG---- ; cor=; Ncor= a 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 161.392 0 0 0 0 c 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 1.05485 0 0 0 0 g 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 836.498 0 0 0 0 t 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101 1.05485 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m3_shift1 ; 19 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m3_shift1 (oligos_7nt_mkv1_m3)
; oligos_7nt_mkv1_m3; m=0 (reference); ncol1=11; shift=1; ncol=12; -ttCCCTGCCyw ; Alignment reference a 0 1 1 0 0 0 0 0 0 0 0 3 c 0 1 1 5 5 5 1 0 5 4 3 0 g 0 1 1 0 0 0 0 5 0 0 0 0 t 0 2 2 0 0 0 4 0 0 1 2 2

MA0599.1_shift2 (KLF5)
; oligos_7nt_mkv1_m3 versus MA0599.1 (KLF5); m=1/18; ncol2=10; w=0; offset=1; strand=D; shift=2; score=0.642991; --gCCMCrCCCh ; cor=; Ncor= a 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 c 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 g 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 t 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0

MA0742.2_rc_shift3 (KLF12_rc)
; oligos_7nt_mkv1_m3 versus MA0742.2_rc (KLF12_rc); m=2/18; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.628862; ---CCCCGCCCC ; cor=; Ncor= a 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 c 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 g 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 t 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948

MA2125.1_shift1 (Zfp809)
; oligos_7nt_mkv1_m3 versus MA2125.1 (Zfp809); m=3/18; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.626992; -wTCCCAGCc-- ; cor=; Ncor= a 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 217.0 0 0 c 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 1091.0 0 0 g 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 115.0 0 0 t 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0 242.0 0 0

MA0740.2_rc_shift3 (KLF14_rc)
; oligos_7nt_mkv1_m3 versus MA0740.2_rc (KLF14_rc); m=4/18; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.606817; ---CCMCGCCCm ; cor=; Ncor= a 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 c 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 g 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 t 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158

MA0685.2_rc_shift3 (SP4_rc)
; oligos_7nt_mkv1_m3 versus MA0685.2_rc (SP4_rc); m=5/18; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.605118; ---CyCCKCCCc ; cor=; Ncor= a 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 c 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 g 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 t 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038

MA0516.3_rc_shift3 (SP2_rc)
; oligos_7nt_mkv1_m3 versus MA0516.3_rc (SP2_rc); m=6/18; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.604997; ---cCCCGCCCC ; cor=; Ncor= a 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 c 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 g 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 t 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226

MA0597.3_rc_shift1 (THAP1_rc)
; oligos_7nt_mkv1_m3 versus MA0597.3_rc (THAP1_rc); m=7/18; ncol2=8; w=0; offset=0; strand=R; shift=1; score=0.591962; -TGCCCTgc--- ; cor=; Ncor= a 0 11.0 115.0 78.0 62.0 71.0 8.0 341.0 549.0 0 0 0 c 0 172.0 104.0 4942.0 4893.0 4958.0 220.0 933.0 3186.0 0 0 0 g 0 95.0 4861.0 67.0 183.0 127.0 219.0 3351.0 966.0 0 0 0 t 0 4900.0 98.0 91.0 40.0 22.0 4731.0 553.0 477.0 0 0 0

MA1513.2_shift3 (KLF15)
; oligos_7nt_mkv1_m3 versus MA1513.2 (KLF15); m=8/18; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.589675; ---cCCCGCCC- ; cor=; Ncor= a 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 c 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 g 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 t 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0

MA1511.2_rc_shift3 (KLF10_rc)
; oligos_7nt_mkv1_m3 versus MA1511.2_rc (KLF10_rc); m=9/18; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.586022; ---CCMCGCCCC ; cor=; Ncor= a 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 c 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 g 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 t 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427

MA1961.2_rc_shift2 (PATZ1_rc)
; oligos_7nt_mkv1_m3 versus MA1961.2_rc (PATZ1_rc); m=10/18; ncol2=11; w=0; offset=1; strand=R; shift=2; score=0.584008; --sCCCCkCCCC ; cor=; Ncor= a 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 c 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 g 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 t 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0

MA1959.2_rc_shift3 (KLF7_rc)
; oligos_7nt_mkv1_m3 versus MA1959.2_rc (KLF7_rc); m=11/18; ncol2=8; w=0; offset=2; strand=R; shift=3; score=0.569856; ---CcMCGCCC- ; cor=; Ncor= a 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 c 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 g 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 t 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0

MA0493.3_rc_shift3 (KLF1_rc)
; oligos_7nt_mkv1_m3 versus MA0493.3_rc (KLF1_rc); m=12/18; ncol2=8; w=0; offset=2; strand=R; shift=3; score=0.557081; ---CCmCrCCC- ; cor=; Ncor= a 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 c 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 g 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 t 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0

MA2341.1_shift3 (FEZF2)
; oligos_7nt_mkv1_m3 versus MA2341.1 (FEZF2); m=13/18; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.553771; ---CCCAGCCT- ; cor=; Ncor= a 0 0 0 17.0 5.0 4.0 231.0 6.0 8.0 7.0 14.0 0 c 0 0 0 202.0 206.0 258.0 15.0 8.0 224.0 247.0 10.0 0 g 0 0 0 10.0 9.0 0.0 14.0 251.0 28.0 2.0 8.0 0 t 0 0 0 36.0 45.0 3.0 5.0 0.0 5.0 9.0 233.0 0

MA1102.3_rc_shift0 (CTCFL_rc)
; oligos_7nt_mkv1_m3 versus MA1102.3_rc (CTCFL_rc); m=14/18; ncol2=8; w=-1; offset=-1; strand=R; shift=0; score=0.449703; GCCCCCTG---- ; cor=; Ncor= a 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 0 0 0 0 c 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 0 0 0 0 g 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 0 0 0 0 t 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 0 0 0 0

MA0670.2_shift6 (NFIA)
; oligos_7nt_mkv1_m3 versus MA0670.2 (NFIA); m=15/18; ncol2=6; w=0; offset=5; strand=D; shift=6; score=0.407678; ------TGCCAA ; cor=; Ncor= a 0 0 0 0 0 0 0.0 0.0 0.0 0.0 89071.0 89418.0 c 0 0 0 0 0 0 0.0 0.0 93597.0 93394.0 0.0 0.0 g 0 0 0 0 0 0 0.0 98253.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 0 95496.0 0.0 0.0 0.0 0.0 0.0

MA1965.2_shift4 (SP5)
; oligos_7nt_mkv1_m3 versus MA1965.2 (SP5); m=16/18; ncol2=6; w=0; offset=3; strand=D; shift=4; score=0.404327; ----CCTCCC-- ; cor=; Ncor= a 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 c 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 g 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 t 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0

MA0738.2_shift5 (HIC2)
; oligos_7nt_mkv1_m3 versus MA0738.2 (HIC2); m=17/18; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.40293; -----rTGCCM- ; cor=; Ncor= a 0 0 0 0 0 2606.0 0.0 494.0 23.0 435.0 1466.0 0 c 0 0 0 0 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 0 g 0 0 0 0 0 2285.0 0.0 4891.0 14.0 0.0 0.0 0 t 0 0 0 0 0 367.0 4891.0 151.0 0.0 59.0 0.0 0

MA2337.1_rc_shift6 (Nr1h3_rc)
; oligos_7nt_mkv1_m3 versus MA2337.1_rc (Nr1h3_rc); m=18/18; ncol2=6; w=0; offset=5; strand=R; shift=6; score=0.402451; ------TGmCCT ; cor=; Ncor= a 0 0 0 0 0 0 1.0 5.0 2247.0 4.0 3.0 0.0 c 0 0 0 0 0 0 19.0 1.0 1600.0 3839.0 3832.0 35.0 g 0 0 0 0 0 0 6.0 3851.0 5.0 17.0 27.0 31.0 t 0 0 0 0 0 0 3836.0 5.0 10.0 2.0 0.0 3796.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m1_shift0 ; 13 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)
; oligos_7nt_mkv1_m1; m=0 (reference); ncol1=12; shift=0; ncol=12; srAGAGTCAAmw ; Alignment reference a 0 1 2 0 2 0 0 0 2 2 1 1 c 1 0 0 0 0 0 0 2 0 0 1 0 g 1 1 0 2 0 2 0 0 0 0 0 0 t 0 0 0 0 0 0 2 0 0 0 0 1

MA0676.1_shift1 (Nr2e1)
; oligos_7nt_mkv1_m1 versus MA0676.1 (Nr2e1); m=1/12; ncol2=9; w=0; offset=1; strand=D; shift=1; score=0.594694; -aaAAGTCAA-- ; cor=; Ncor= a 0 1118.0 1118.0 1118.0 1118.0 40.0 0.0 11.0 1118.0 1118.0 0 0 c 0 244.0 89.0 1.0 0.0 0.0 58.0 1118.0 0.0 131.0 0 0 g 0 191.0 448.0 101.0 74.0 1118.0 0.0 12.0 0.0 117.0 0 0 t 0 401.0 369.0 19.0 5.0 8.0 1118.0 112.0 0.0 247.0 0 0

MA1657.2_shift1 (ZNF652)
; oligos_7nt_mkv1_m1 versus MA1657.2 (ZNF652); m=2/12; ncol2=9; w=0; offset=1; strand=D; shift=1; score=0.576976; -AAGrGTTAA-- ; cor=; Ncor= a 0 11418.0 11220.0 267.0 7606.0 178.0 220.0 240.0 11708.0 9189.0 0 0 c 0 372.0 89.0 573.0 106.0 109.0 155.0 274.0 215.0 1216.0 0 0 g 0 317.0 660.0 10998.0 4279.0 11940.0 182.0 249.0 205.0 1032.0 0 0 t 0 266.0 404.0 535.0 382.0 146.0 11816.0 11610.0 245.0 936.0 0 0

MA0489.3_rc_shift1 (Jun_rc)
; oligos_7nt_mkv1_m1 versus MA0489.3_rc (Jun_rc); m=3/12; ncol2=8; w=0; offset=1; strand=R; shift=1; score=0.526491; -aTGAGTCA--- ; cor=; Ncor= a 0 61451.0 1633.0 969.0 89140.0 4185.0 1648.0 2739.0 91503.0 0 0 0 c 0 13040.0 1147.0 1228.0 1009.0 14953.0 1717.0 88928.0 718.0 0 0 0 g 0 14637.0 1827.0 88215.0 920.0 71105.0 1493.0 1468.0 716.0 0 0 0 t 0 4975.0 89496.0 3691.0 3034.0 3860.0 89245.0 968.0 1166.0 0 0 0

MA0476.2_rc_shift1 (FOS_rc)
; oligos_7nt_mkv1_m1 versus MA0476.2_rc (FOS_rc); m=4/12; ncol2=8; w=0; offset=1; strand=R; shift=1; score=0.500416; -ATGAsTCA--- ; cor=; Ncor= a 0 21777.0 0.0 0.0 29396.0 3113.0 0.0 2288.0 29396.0 0 0 0 c 0 1538.0 0.0 0.0 0.0 11206.0 0.0 27108.0 0.0 0 0 0 g 0 5823.0 0.0 29396.0 0.0 14079.0 0.0 0.0 0.0 0 0 0 t 0 258.0 29396.0 0.0 0.0 998.0 29396.0 0.0 0.0 0 0 0

MA0835.3_rc_shift2 (BATF3_rc)
; oligos_7nt_mkv1_m1 versus MA0835.3_rc (BATF3_rc); m=5/12; ncol2=7; w=0; offset=2; strand=R; shift=2; score=0.465653; --TGAGTCA--- ; cor=; Ncor= a 0 0 235.0 282.0 11502.0 408.0 116.0 1238.0 11737.0 0 0 0 c 0 0 117.0 88.0 117.0 560.0 87.0 10420.0 37.0 0 0 0 g 0 0 84.0 10347.0 79.0 10589.0 92.0 62.0 59.0 0 0 0 t 0 0 11529.0 1248.0 267.0 408.0 11670.0 245.0 132.0 0 0 0

MA1928.2_shift2 (BNC2)
; oligos_7nt_mkv1_m1 versus MA1928.2 (BNC2); m=6/12; ncol2=7; w=0; offset=2; strand=D; shift=2; score=0.465373; --TGAGTCA--- ; cor=; Ncor= a 0 0 147.0 134.0 5303.0 227.0 86.0 216.0 5483.0 0 0 0 c 0 0 66.0 72.0 117.0 838.0 106.0 5238.0 54.0 0 0 0 g 0 0 96.0 5184.0 61.0 4332.0 80.0 112.0 56.0 0 0 0 t 0 0 5363.0 282.0 191.0 275.0 5400.0 106.0 79.0 0 0 0

MA1988.2_rc_shift2 (Atf3_rc)
; oligos_7nt_mkv1_m1 versus MA1988.2_rc (Atf3_rc); m=7/12; ncol2=7; w=0; offset=2; strand=R; shift=2; score=0.464102; --TGAGTCA--- ; cor=; Ncor= a 0 0 887.0 2087.0 50485.0 2262.0 547.0 3914.0 53085.0 0 0 0 c 0 0 1086.0 574.0 1365.0 4498.0 471.0 48774.0 357.0 0 0 0 g 0 0 673.0 46610.0 504.0 45670.0 356.0 443.0 669.0 0 0 0 t 0 0 52046.0 5421.0 2338.0 2262.0 53318.0 1561.0 581.0 0 0 0

MA0462.3_rc_shift2 (BATF::JUN_rc)
; oligos_7nt_mkv1_m1 versus MA0462.3_rc (BATF::JUN_rc); m=8/12; ncol2=7; w=0; offset=2; strand=R; shift=2; score=0.461896; --TGAGTCA--- ; cor=; Ncor= a 0 0 558.0 907.0 36619.0 1399.0 320.0 3785.0 37330.0 0 0 0 c 0 0 424.0 522.0 539.0 4188.0 350.0 33135.0 182.0 0 0 0 g 0 0 318.0 32770.0 241.0 31168.0 204.0 400.0 275.0 0 0 0 t 0 0 36854.0 3955.0 755.0 1399.0 37280.0 834.0 367.0 0 0 0

MA1634.2_rc_shift2 (BATF_rc)
; oligos_7nt_mkv1_m1 versus MA1634.2_rc (BATF_rc); m=9/12; ncol2=7; w=0; offset=2; strand=R; shift=2; score=0.460907; --TGAGTCA--- ; cor=; Ncor= a 0 0 754.0 1276.0 44736.0 2051.0 471.0 4682.0 45887.0 0 0 0 c 0 0 507.0 711.0 836.0 5573.0 341.0 40617.0 283.0 0 0 0 g 0 0 431.0 40279.0 306.0 37333.0 250.0 570.0 355.0 0 0 0 t 0 0 45316.0 4742.0 1130.0 2051.0 45946.0 1139.0 483.0 0 0 0

MA0848.1_shift5 (FOXO4)
; oligos_7nt_mkv1_m1 versus MA0848.1 (FOXO4); m=10/12; ncol2=7; w=0; offset=5; strand=D; shift=5; score=0.421496; -----GTAAACA ; cor=; Ncor= a 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 c 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 g 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 t 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0

MA0849.1_shift5 (FOXO6)
; oligos_7nt_mkv1_m1 versus MA0849.1 (FOXO6); m=11/12; ncol2=7; w=0; offset=5; strand=D; shift=5; score=0.41787; -----GTAAACA ; cor=; Ncor= a 0 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 c 0 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 g 0 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 t 0 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0

MA0042.2_shift5 (FOXI1)
; oligos_7nt_mkv1_m1 versus MA0042.2 (FOXI1); m=12/12; ncol2=7; w=0; offset=5; strand=D; shift=5; score=0.415589; -----GTAAACA ; cor=; Ncor= a 0 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 c 0 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 g 0 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 t 0 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m2_shift2 ; 15 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m2_shift2 (oligos_6nt_mkv1_m2)
; oligos_6nt_mkv1_m2; m=0 (reference); ncol1=10; shift=2; ncol=12; --AGAGTCAAmw ; Alignment reference a 0 0 2 0 2 0 0 0 2 2 1 1 c 0 0 0 0 0 0 0 2 0 0 1 0 g 0 0 0 2 0 2 0 0 0 0 0 0 t 0 0 0 0 0 0 2 0 0 0 0 1

MA0676.1_shift1 (Nr2e1)
; oligos_6nt_mkv1_m2 versus MA0676.1 (Nr2e1); m=1/14; ncol2=9; w=-1; offset=-1; strand=D; shift=1; score=0.586274; -aaAAGTCAA-- ; cor=; Ncor= a 0 1118.0 1118.0 1118.0 1118.0 40.0 0.0 11.0 1118.0 1118.0 0 0 c 0 244.0 89.0 1.0 0.0 0.0 58.0 1118.0 0.0 131.0 0 0 g 0 191.0 448.0 101.0 74.0 1118.0 0.0 12.0 0.0 117.0 0 0 t 0 401.0 369.0 19.0 5.0 8.0 1118.0 112.0 0.0 247.0 0 0

MA1657.2_shift1 (ZNF652)
; oligos_6nt_mkv1_m2 versus MA1657.2 (ZNF652); m=2/14; ncol2=9; w=-1; offset=-1; strand=D; shift=1; score=0.57761; -AAGrGTTAA-- ; cor=; Ncor= a 0 11418.0 11220.0 267.0 7606.0 178.0 220.0 240.0 11708.0 9189.0 0 0 c 0 372.0 89.0 573.0 106.0 109.0 155.0 274.0 215.0 1216.0 0 0 g 0 317.0 660.0 10998.0 4279.0 11940.0 182.0 249.0 205.0 1032.0 0 0 t 0 266.0 404.0 535.0 382.0 146.0 11816.0 11610.0 245.0 936.0 0 0

MA0835.3_rc_shift2 (BATF3_rc)
; oligos_6nt_mkv1_m2 versus MA0835.3_rc (BATF3_rc); m=3/14; ncol2=7; w=0; offset=0; strand=R; shift=2; score=0.558784; --TGAGTCA--- ; cor=; Ncor= a 0 0 235.0 282.0 11502.0 408.0 116.0 1238.0 11737.0 0 0 0 c 0 0 117.0 88.0 117.0 560.0 87.0 10420.0 37.0 0 0 0 g 0 0 84.0 10347.0 79.0 10589.0 92.0 62.0 59.0 0 0 0 t 0 0 11529.0 1248.0 267.0 408.0 11670.0 245.0 132.0 0 0 0

MA1928.2_shift2 (BNC2)
; oligos_6nt_mkv1_m2 versus MA1928.2 (BNC2); m=4/14; ncol2=7; w=0; offset=0; strand=D; shift=2; score=0.558448; --TGAGTCA--- ; cor=; Ncor= a 0 0 147.0 134.0 5303.0 227.0 86.0 216.0 5483.0 0 0 0 c 0 0 66.0 72.0 117.0 838.0 106.0 5238.0 54.0 0 0 0 g 0 0 96.0 5184.0 61.0 4332.0 80.0 112.0 56.0 0 0 0 t 0 0 5363.0 282.0 191.0 275.0 5400.0 106.0 79.0 0 0 0

MA1988.2_rc_shift2 (Atf3_rc)
; oligos_6nt_mkv1_m2 versus MA1988.2_rc (Atf3_rc); m=5/14; ncol2=7; w=0; offset=0; strand=R; shift=2; score=0.556923; --TGAGTCA--- ; cor=; Ncor= a 0 0 887.0 2087.0 50485.0 2262.0 547.0 3914.0 53085.0 0 0 0 c 0 0 1086.0 574.0 1365.0 4498.0 471.0 48774.0 357.0 0 0 0 g 0 0 673.0 46610.0 504.0 45670.0 356.0 443.0 669.0 0 0 0 t 0 0 52046.0 5421.0 2338.0 2262.0 53318.0 1561.0 581.0 0 0 0

MA0462.3_rc_shift2 (BATF::JUN_rc)
; oligos_6nt_mkv1_m2 versus MA0462.3_rc (BATF::JUN_rc); m=6/14; ncol2=7; w=0; offset=0; strand=R; shift=2; score=0.554275; --TGAGTCA--- ; cor=; Ncor= a 0 0 558.0 907.0 36619.0 1399.0 320.0 3785.0 37330.0 0 0 0 c 0 0 424.0 522.0 539.0 4188.0 350.0 33135.0 182.0 0 0 0 g 0 0 318.0 32770.0 241.0 31168.0 204.0 400.0 275.0 0 0 0 t 0 0 36854.0 3955.0 755.0 1399.0 37280.0 834.0 367.0 0 0 0

MA1634.2_rc_shift2 (BATF_rc)
; oligos_6nt_mkv1_m2 versus MA1634.2_rc (BATF_rc); m=7/14; ncol2=7; w=0; offset=0; strand=R; shift=2; score=0.553088; --TGAGTCA--- ; cor=; Ncor= a 0 0 754.0 1276.0 44736.0 2051.0 471.0 4682.0 45887.0 0 0 0 c 0 0 507.0 711.0 836.0 5573.0 341.0 40617.0 283.0 0 0 0 g 0 0 431.0 40279.0 306.0 37333.0 250.0 570.0 355.0 0 0 0 t 0 0 45316.0 4742.0 1130.0 2051.0 45946.0 1139.0 483.0 0 0 0

MA0489.3_rc_shift1 (Jun_rc)
; oligos_6nt_mkv1_m2 versus MA0489.3_rc (Jun_rc); m=8/14; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score=0.506886; -aTGAGTCA--- ; cor=; Ncor= a 0 61451.0 1633.0 969.0 89140.0 4185.0 1648.0 2739.0 91503.0 0 0 0 c 0 13040.0 1147.0 1228.0 1009.0 14953.0 1717.0 88928.0 718.0 0 0 0 g 0 14637.0 1827.0 88215.0 920.0 71105.0 1493.0 1468.0 716.0 0 0 0 t 0 4975.0 89496.0 3691.0 3034.0 3860.0 89245.0 968.0 1166.0 0 0 0

MA0848.1_shift5 (FOXO4)
; oligos_6nt_mkv1_m2 versus MA0848.1 (FOXO4); m=9/14; ncol2=7; w=0; offset=3; strand=D; shift=5; score=0.505796; -----GTAAACA ; cor=; Ncor= a 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 c 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 g 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 t 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0

MA0849.1_shift5 (FOXO6)
; oligos_6nt_mkv1_m2 versus MA0849.1 (FOXO6); m=10/14; ncol2=7; w=0; offset=3; strand=D; shift=5; score=0.501444; -----GTAAACA ; cor=; Ncor= a 0 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 c 0 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 g 0 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 t 0 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0

MA0042.2_shift5 (FOXI1)
; oligos_6nt_mkv1_m2 versus MA0042.2 (FOXI1); m=11/14; ncol2=7; w=0; offset=3; strand=D; shift=5; score=0.498706; -----GTAAACA ; cor=; Ncor= a 0 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 c 0 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 g 0 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 t 0 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0

MA0476.2_rc_shift1 (FOS_rc)
; oligos_6nt_mkv1_m2 versus MA0476.2_rc (FOS_rc); m=12/14; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score=0.478362; -ATGAsTCA--- ; cor=; Ncor= a 0 21777.0 0.0 0.0 29396.0 3113.0 0.0 2288.0 29396.0 0 0 0 c 0 1538.0 0.0 0.0 0.0 11206.0 0.0 27108.0 0.0 0 0 0 g 0 5823.0 0.0 29396.0 0.0 14079.0 0.0 0.0 0.0 0 0 0 t 0 258.0 29396.0 0.0 0.0 998.0 29396.0 0.0 0.0 0 0 0

MA0496.4_rc_shift0 (MAFK_rc)
; oligos_6nt_mkv1_m2 versus MA0496.4_rc (MAFK_rc); m=13/14; ncol2=10; w=-2; offset=-2; strand=R; shift=0; score=0.467401; GCTGAGTCAk-- ; cor=; Ncor= a 2285.0 4361.0 1910.0 1087.0 46798.0 2544.0 1274.0 2565.0 47492.0 3939.0 0 0 c 3327.0 44013.0 1267.0 957.0 1081.0 7573.0 1306.0 46695.0 1058.0 6706.0 0 0 g 43458.0 1921.0 882.0 47872.0 1133.0 39125.0 1670.0 1366.0 1568.0 27000.0 0 0 t 2664.0 1439.0 47675.0 1818.0 2722.0 2492.0 47484.0 1108.0 1616.0 14089.0 0 0

MA1994.2_rc_shift6 (Nkx2-1_rc)
; oligos_6nt_mkv1_m2 versus MA1994.2_rc (Nkx2-1_rc); m=14/14; ncol2=7; w=0; offset=4; strand=R; shift=6; score=0.404028; ------TCAAGT ; cor=; Ncor= a 0 0 0 0 0 0 541.0 518.0 15157.0 15106.0 316.0 343.0 c 0 0 0 0 0 0 213.0 14172.0 315.0 605.0 118.0 146.0 g 0 0 0 0 0 0 243.0 657.0 518.0 162.0 15640.0 275.0 t 0 0 0 0 0 0 15245.0 895.0 252.0 369.0 168.0 15478.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m1_shift3 ; 15 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m1_shift3 (oligos_6nt_mkv1_m1)
; oligos_6nt_mkv1_m1; m=0 (reference); ncol1=10; shift=3; ncol=13; ---CCCGCTTATC ; Alignment reference a 0 0 0 0 0 0 0 0 0 0 1 0 0 c 0 0 0 1 1 1 0 1 0 0 0 0 1 g 0 0 0 0 0 0 1 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 1 1 0 1 0

MA0482.3_shift6 (GATA4)
; oligos_6nt_mkv1_m1 versus MA0482.3 (GATA4); m=1/14; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.548131; ------cCTTATC ; cor=; Ncor= a 0 0 0 0 0 0 3977.0 3150.0 1586.0 1650.0 54420.0 770.0 480.0 c 0 0 0 0 0 0 38289.0 50062.0 1429.0 1377.0 1703.0 582.0 56544.0 g 0 0 0 0 0 0 5099.0 1103.0 749.0 808.0 1245.0 539.0 568.0 t 0 0 0 0 0 0 11649.0 4699.0 55250.0 55179.0 1646.0 57123.0 1422.0

MA0037.5_shift6 (Gata3)
; oligos_6nt_mkv1_m1 versus MA0037.5 (Gata3); m=2/14; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.547248; ------tCTTATC ; cor=; Ncor= a 0 0 0 0 0 0 2016.0 946.0 794.0 984.0 22974.0 427.0 294.0 c 0 0 0 0 0 0 3859.0 19702.0 928.0 758.0 566.0 282.0 23839.0 g 0 0 0 0 0 0 2551.0 2165.0 280.0 960.0 528.0 291.0 255.0 t 0 0 0 0 0 0 16442.0 2055.0 22866.0 22166.0 800.0 23868.0 480.0

MA1104.3_shift6 (GATA6)
; oligos_6nt_mkv1_m1 versus MA1104.3 (GATA6); m=3/14; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.544143; ------TCTTATC ; cor=; Ncor= a 0 0 0 0 0 0 5912.0 4535.0 2560.0 5044.0 76686.0 1507.0 1096.0 c 0 0 0 0 0 0 11831.0 62936.0 1439.0 1393.0 815.0 852.0 75930.0 g 0 0 0 0 0 0 7066.0 6459.0 580.0 615.0 819.0 456.0 712.0 t 0 0 0 0 0 0 54635.0 5514.0 74865.0 72392.0 1124.0 76629.0 1706.0

MA1970.2_shift6 (TRPS1)
; oligos_6nt_mkv1_m1 versus MA1970.2 (TRPS1); m=4/14; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.543685; ------TCTTATC ; cor=; Ncor= a 0 0 0 0 0 0 1359.0 941.0 645.0 874.0 17440.0 312.0 252.0 c 0 0 0 0 0 0 2547.0 14262.0 560.0 462.0 215.0 265.0 17146.0 g 0 0 0 0 0 0 1749.0 1426.0 320.0 449.0 329.0 179.0 263.0 t 0 0 0 0 0 0 12628.0 1654.0 16758.0 16498.0 299.0 17527.0 622.0

MA0036.4_shift7 (GATA2)
; oligos_6nt_mkv1_m1 versus MA0036.4 (GATA2); m=5/14; ncol2=7; w=0; offset=4; strand=D; shift=7; score=0.541189; -------CTTATC ; cor=; Ncor= a 0 0 0 0 0 0 0 940.0 444.0 417.0 14098.0 145.0 96.0 c 0 0 0 0 0 0 0 10607.0 259.0 34.0 14.0 77.0 13786.0 g 0 0 0 0 0 0 0 1223.0 150.0 21.0 43.0 48.0 126.0 t 0 0 0 0 0 0 0 1443.0 13360.0 13741.0 58.0 13943.0 205.0

MA0124.3_shift4 (Nkx3-1)
; oligos_6nt_mkv1_m1 versus MA0124.3 (Nkx3-1); m=6/14; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.54102; ----cCACTTA-- ; cor=; Ncor= a 0 0 0 0 981.0 0.0 5335.0 59.0 0.0 0.0 5335.0 0 0 c 0 0 0 0 5335.0 5335.0 28.0 5335.0 1.0 254.0 273.0 0 0 g 0 0 0 0 1776.0 10.0 10.0 9.0 0.0 0.0 173.0 0 0 t 0 0 0 0 275.0 336.0 88.0 9.0 5335.0 5335.0 523.0 0 0

MA0766.3_rc_shift6 (GATA5_rc)
; oligos_6nt_mkv1_m1 versus MA0766.3_rc (GATA5_rc); m=7/14; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.537429; ------ysTTATC ; cor=; Ncor= a 0 0 0 0 0 0 668.0 586.0 204.0 331.0 15369.0 0.0 0.0 c 0 0 0 0 0 0 8179.0 7774.0 200.0 0.0 0.0 0.0 15369.0 g 0 0 0 0 0 0 3215.0 7594.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 0 7190.0 212.0 15369.0 15369.0 0.0 15369.0 0.0

MA0767.2_rc_shift2 (GCM2_rc)
; oligos_6nt_mkv1_m1 versus MA0767.2_rc (GCM2_rc); m=8/14; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.497998; --rCCCGCAT--- ; cor=; Ncor= a 0 0 1320.0 0.0 13.0 66.0 127.0 0.0 1320.0 45.0 0 0 0 c 0 0 91.0 1320.0 1320.0 1320.0 138.0 1320.0 24.0 299.0 0 0 0 g 0 0 533.0 0.0 0.0 1.0 1320.0 32.0 41.0 77.0 0 0 0 t 0 0 92.0 1.0 0.0 51.0 84.0 263.0 23.0 1320.0 0 0 0

MA0035.5_shift7 (GATA1)
; oligos_6nt_mkv1_m1 versus MA0035.5 (GATA1); m=9/14; ncol2=7; w=0; offset=4; strand=D; shift=7; score=0.47893; -------CTWATC ; cor=; Ncor= a 0 0 0 0 0 0 0 3953.0 1314.0 49692.0 67550.0 2206.0 2567.0 c 0 0 0 0 0 0 0 62419.0 595.0 710.0 1292.0 1238.0 65937.0 g 0 0 0 0 0 0 0 2712.0 652.0 856.0 988.0 618.0 1471.0 t 0 0 0 0 0 0 0 2744.0 69267.0 20570.0 1998.0 67766.0 1853.0

MA0877.4_shift5 (BARHL1)
; oligos_6nt_mkv1_m1 versus MA0877.4 (BARHL1); m=10/14; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.47409; -----CGTTTA-- ; cor=; Ncor= a 0 0 0 0 0 202.0 833.0 281.0 0.0 96.0 3960.0 0 0 c 0 0 0 0 0 3960.0 34.0 223.0 4.0 9.0 16.0 0 0 g 0 0 0 0 0 3.0 3960.0 33.0 0.0 0.0 26.0 0 0 t 0 0 0 0 0 26.0 46.0 3960.0 3960.0 3960.0 125.0 0 0

MA0635.2_rc_shift5 (BARHL2_rc)
; oligos_6nt_mkv1_m1 versus MA0635.2_rc (BARHL2_rc); m=11/14; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.463612; -----CrTTTA-- ; cor=; Ncor= a 0 0 0 0 0 1335.0 7756.0 4032.0 0.0 1969.0 12855.0 0 0 c 0 0 0 0 0 12855.0 127.0 1086.0 0.0 0.0 0.0 0 0 g 0 0 0 0 0 0.0 12855.0 116.0 0.0 0.0 0.0 0 0 t 0 0 0 0 0 1570.0 443.0 12855.0 12855.0 12855.0 643.0 0 0

MA1122.2_rc_shift1 (TFDP1_rc)
; oligos_6nt_mkv1_m1 versus MA1122.2_rc (TFDP1_rc); m=12/14; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.433458; -TTCCCGCs---- ; cor=; Ncor= a 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 0 c 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 0 g 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 0 t 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0 0

MA0914.2_shift5 (ISL2)
; oligos_6nt_mkv1_m1 versus MA0914.2 (ISL2); m=13/14; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.425612; -----CAmTTA-- ; cor=; Ncor= a 0 0 0 0 0 160.0 5631.0 3161.0 218.0 278.0 5631.0 0 0 c 0 0 0 0 0 5631.0 162.0 5631.0 130.0 718.0 206.0 0 0 g 0 0 0 0 0 126.0 134.0 171.0 169.0 13.0 59.0 0 0 t 0 0 0 0 0 1019.0 248.0 398.0 5631.0 5631.0 1354.0 0 0

MA0646.2_rc_shift0 (GCM1_rc)
; oligos_6nt_mkv1_m1 versus MA0646.2_rc (GCM1_rc); m=14/14; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.417404; gtACCCGCAT--- ; cor=; Ncor= a 2409.0 2014.0 21439.0 10.0 35.0 3815.0 880.0 15.0 21439.0 261.0 0 0 0 c 4829.0 7971.0 147.0 21439.0 21439.0 21439.0 572.0 21439.0 96.0 4010.0 0 0 0 g 13412.0 2905.0 4992.0 18.0 4.0 255.0 21439.0 274.0 154.0 1811.0 0 0 0 t 789.0 21439.0 146.0 0.0 0.0 594.0 1002.0 4371.0 161.0 21439.0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m2_shift3 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m2_shift3 (oligos_7nt_mkv1_m2)
; oligos_7nt_mkv1_m2; m=0 (reference); ncol1=13; shift=3; ncol=16; ---GTGATAAGCGGGG ; Alignment reference a 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 g 0 0 0 1 0 1 0 0 0 0 1 0 1 1 1 1 t 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0

MA0766.3_shift4 (GATA5)
; oligos_7nt_mkv1_m2 versus MA0766.3 (GATA5); m=1/8; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.497949; ----wGATAAsr---- ; cor=; Ncor= a 0 0 0 0 8021.0 0.0 15369.0 0.0 15369.0 15369.0 212.0 7190.0 0 0 0 0 c 0 0 0 0 2328.0 0.0 0.0 0.0 0.0 0.0 7594.0 3215.0 0 0 0 0 g 0 0 0 0 52.0 15369.0 0.0 0.0 0.0 200.0 7774.0 8179.0 0 0 0 0 t 0 0 0 0 7348.0 0.0 0.0 15369.0 331.0 204.0 586.0 668.0 0 0 0 0

MA0036.4_rc_shift4 (GATA2_rc)
; oligos_7nt_mkv1_m2 versus MA0036.4_rc (GATA2_rc); m=2/8; ncol2=7; w=0; offset=1; strand=R; shift=4; score=0.462155; ----AGATAAG----- ; cor=; Ncor= a 0 0 0 0 10981.0 205.0 13943.0 58.0 13741.0 13360.0 1443.0 0 0 0 0 0 c 0 0 0 0 367.0 126.0 48.0 43.0 21.0 150.0 1223.0 0 0 0 0 0 g 0 0 0 0 492.0 13786.0 77.0 14.0 34.0 259.0 10607.0 0 0 0 0 0 t 0 0 0 0 2373.0 96.0 145.0 14098.0 417.0 444.0 940.0 0 0 0 0 0

MA1104.3_rc_shift4 (GATA6_rc)
; oligos_7nt_mkv1_m2 versus MA1104.3_rc (GATA6_rc); m=3/8; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.459932; ----AGATAAGA---- ; cor=; Ncor= a 0 0 0 0 61257.0 1706.0 76629.0 1124.0 72392.0 74865.0 5514.0 54635.0 0 0 0 0 c 0 0 0 0 1810.0 712.0 456.0 819.0 615.0 580.0 6459.0 7066.0 0 0 0 0 g 0 0 0 0 3228.0 75930.0 852.0 815.0 1393.0 1439.0 62936.0 11831.0 0 0 0 0 t 0 0 0 0 13149.0 1096.0 1507.0 76686.0 5044.0 2560.0 4535.0 5912.0 0 0 0 0

MA1970.2_rc_shift4 (TRPS1_rc)
; oligos_7nt_mkv1_m2 versus MA1970.2_rc (TRPS1_rc); m=4/8; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.45766; ----AGATAAGA---- ; cor=; Ncor= a 0 0 0 0 13985.0 622.0 17527.0 299.0 16498.0 16758.0 1654.0 12628.0 0 0 0 0 c 0 0 0 0 716.0 263.0 179.0 329.0 449.0 320.0 1426.0 1749.0 0 0 0 0 g 0 0 0 0 792.0 17146.0 265.0 215.0 462.0 560.0 14262.0 2547.0 0 0 0 0 t 0 0 0 0 2790.0 252.0 312.0 17440.0 874.0 645.0 941.0 1359.0 0 0 0 0

MA0482.3_rc_shift4 (GATA4_rc)
; oligos_7nt_mkv1_m2 versus MA0482.3_rc (GATA4_rc); m=5/8; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.455887; ----AGATAAGg---- ; cor=; Ncor= a 0 0 0 0 48187.0 1422.0 57123.0 1646.0 55179.0 55250.0 4699.0 11649.0 0 0 0 0 c 0 0 0 0 1376.0 568.0 539.0 1245.0 808.0 749.0 1103.0 5099.0 0 0 0 0 g 0 0 0 0 1792.0 56544.0 582.0 1703.0 1377.0 1429.0 50062.0 38289.0 0 0 0 0 t 0 0 0 0 7659.0 480.0 770.0 54420.0 1650.0 1586.0 3150.0 3977.0 0 0 0 0

MA0037.5_rc_shift4 (Gata3_rc)
; oligos_7nt_mkv1_m2 versus MA0037.5_rc (Gata3_rc); m=6/8; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.453128; ----AGATAAGa---- ; cor=; Ncor= a 0 0 0 0 20257.0 480.0 23868.0 800.0 22166.0 22866.0 2055.0 16442.0 0 0 0 0 c 0 0 0 0 608.0 255.0 291.0 528.0 960.0 280.0 2165.0 2551.0 0 0 0 0 g 0 0 0 0 903.0 23839.0 282.0 566.0 758.0 928.0 19702.0 3859.0 0 0 0 0 t 0 0 0 0 3100.0 294.0 427.0 22974.0 984.0 794.0 946.0 2016.0 0 0 0 0

MA0124.3_rc_shift7 (Nkx3-1_rc)
; oligos_7nt_mkv1_m2 versus MA0124.3_rc (Nkx3-1_rc); m=7/8; ncol2=7; w=0; offset=4; strand=R; shift=7; score=0.416169; -------TAAGTGg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 523.0 5335.0 5335.0 9.0 88.0 336.0 275.0 0 0 c 0 0 0 0 0 0 0 173.0 0.0 0.0 9.0 10.0 10.0 1776.0 0 0 g 0 0 0 0 0 0 0 273.0 254.0 1.0 5335.0 28.0 5335.0 5335.0 0 0 t 0 0 0 0 0 0 0 5335.0 0.0 0.0 59.0 5335.0 0.0 981.0 0 0

MA2097.1_rc_shift0 (ZNF75A_rc)
; oligos_7nt_mkv1_m2 versus MA2097.1_rc (ZNF75A_rc); m=8/8; ncol2=12; w=-3; offset=-3; strand=R; shift=0; score=0.402049; tGTGGGAAAAgC---- ; cor=; Ncor= a 174.0 0.0 7.0 0.0 44.0 19.0 1331.0 1331.0 1331.0 1331.0 61.0 259.0 0 0 0 0 c 253.0 0.0 7.0 0.0 7.0 0.0 0.0 149.0 0.0 27.0 426.0 1331.0 0 0 0 0 g 333.0 1331.0 9.0 1331.0 1331.0 1331.0 1.0 174.0 1.0 122.0 1331.0 147.0 0 0 0 0 t 998.0 4.0 1331.0 1.0 165.0 0.0 2.0 109.0 0.0 57.0 498.0 133.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m4_shift2 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m4_shift2 (oligos_7nt_mkv1_m4)
; oligos_7nt_mkv1_m4; m=0 (reference); ncol1=15; shift=2; ncol=17; --TCTCCATAACACAAG ; Alignment reference a 0 0 0 0 0 0 0 1 0 1 1 0 1 0 1 1 0 c 0 0 0 1 0 1 1 0 0 0 0 1 0 1 0 0 0 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 t 0 0 1 0 1 0 0 0 1 0 0 0 0 0 0 0 0

MA1579.2_shift3 (ZBTB26)
; oligos_7nt_mkv1_m4 versus MA1579.2 (ZBTB26); m=1/2; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.417372; ---cTCCAGAA------ ; cor=; Ncor= a 0 0 0 274.0 9.0 20.0 5.0 1535.0 27.0 1582.0 1134.0 0 0 0 0 0 0 c 0 0 0 872.0 5.0 1592.0 1503.0 17.0 3.0 22.0 138.0 0 0 0 0 0 0 g 0 0 0 123.0 5.0 12.0 13.0 49.0 1581.0 9.0 223.0 0 0 0 0 0 0 t 0 0 0 358.0 1608.0 3.0 106.0 26.0 16.0 14.0 132.0 0 0 0 0 0 0

MA1999.2_shift0 (Prdm5)
; oligos_7nt_mkv1_m4 versus MA1999.2 (Prdm5); m=2/2; ncol2=11; w=-2; offset=-2; strand=D; shift=0; score=0.403141; GTTCTCCATCt------ ; cor=; Ncor= a 36.0 59.0 18.0 20.0 39.0 16.0 22.0 575.0 18.0 43.0 88.0 0 0 0 0 0 0 c 60.0 86.0 43.0 677.0 31.0 677.0 685.0 81.0 59.0 518.0 145.0 0 0 0 0 0 0 g 580.0 50.0 37.0 13.0 20.0 30.0 18.0 40.0 128.0 86.0 67.0 0 0 0 0 0 0 t 64.0 545.0 642.0 30.0 650.0 17.0 15.0 44.0 535.0 93.0 440.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m5_shift2 (oligos_7nt_mkv1_m5)				; oligos_7nt_mkv1_m5; m=0 (reference); ncol1=11; shift=2; ncol=13; --AGCGGGGTAGG ; Alignment reference a 0 0 1 0 0 0 0 0 0 0 1 0 0 c 0 0 0 0 1 0 0 0 0 0 0 0 0 g 0 0 0 1 0 1 1 1 1 0 0 1 1 t 0 0 0 0 0 0 0 0 0 1 0 0 0
MA1627.2_rc_shift3 (Wt1_rc)				; oligos_7nt_mkv1_m5 versus MA1627.2_rc (Wt1_rc); m=1/16; ncol2=10; w=0; offset=1; strand=R; shift=3; score=0.673099; ---GTGGGGGAGg ; cor=; Ncor= a 0 0 0 348.0 354.0 41.0 104.0 276.0 222.0 26.0 4183.0 39.0 500.0 c 0 0 0 436.0 990.0 46.0 101.0 120.0 75.0 42.0 319.0 58.0 404.0 g 0 0 0 3749.0 53.0 4573.0 3636.0 4252.0 4354.0 4602.0 69.0 4546.0 2948.0 t 0 0 0 158.0 3294.0 31.0 850.0 43.0 40.0 21.0 120.0 48.0 839.0
MA1630.3_shift5 (ZNF281)				; oligos_7nt_mkv1_m5 versus MA1630.3 (ZNF281); m=2/16; ncol2=10; w=0; offset=3; strand=D; shift=5; score=0.49527; -----GGGGGAGG ; cor=; Ncor= a 0 0 0 0 0 1.0 1.0 35.0 1.0 1.0 720.0 122.0 1.0 c 0 0 0 0 0 1.0 1.0 1.0 1.0 1.0 183.0 1.0 1.0 g 0 0 0 0 0 998.0 998.0 963.0 998.0 998.0 1.0 772.0 998.0 t 0 0 0 0 0 1.0 1.0 1.0 1.0 1.0 96.0 105.0 1.0
MA1717.2_rc_shift6 (ZNF784_rc)				; oligos_7nt_mkv1_m5 versus MA1717.2_rc (ZNF784_rc); m=3/16; ncol2=8; w=0; offset=4; strand=R; shift=6; score=0.48931; ------cGGTArG ; cor=; Ncor= a 0 0 0 0 0 0 1746.0 154.0 124.0 22.0 6529.0 2182.0 69.0 c 0 0 0 0 0 0 4783.0 555.0 10.0 42.0 96.0 77.0 0.0 g 0 0 0 0 0 0 559.0 6529.0 6529.0 35.0 229.0 4347.0 6529.0 t 0 0 0 0 0 0 680.0 135.0 39.0 6529.0 206.0 71.0 26.0
MA1653.2_rc_shift5 (ZNF148_rc)				; oligos_7nt_mkv1_m5 versus MA1653.2_rc (ZNF148_rc); m=4/16; ncol2=10; w=0; offset=3; strand=R; shift=5; score=0.478274; -----ggGGGAGG ; cor=; Ncor= a 0 0 0 0 0 1180.0 1190.0 1082.0 465.0 67.0 10040.0 66.0 136.0 c 0 0 0 0 0 2064.0 1924.0 392.0 460.0 112.0 1012.0 211.0 401.0 g 0 0 0 0 0 7114.0 7239.0 9283.0 9922.0 10954.0 14.0 10833.0 10526.0 t 0 0 0 0 0 841.0 846.0 442.0 352.0 66.0 133.0 89.0 136.0
MA0039.5_rc_shift6 (KLF4_rc)				; oligos_7nt_mkv1_m5 versus MA0039.5_rc (KLF4_rc); m=5/16; ncol2=8; w=0; offset=4; strand=R; shift=6; score=0.45908; ------GGGTGGG ; cor=; Ncor= a 0 0 0 0 0 0 2565.0 1218.0 1129.0 3456.0 976.0 1969.0 4633.0 c 0 0 0 0 0 0 1005.0 1870.0 1470.0 6598.0 793.0 1422.0 1214.0 g 0 0 0 0 0 0 51045.0 51112.0 52366.0 161.0 52875.0 45405.0 47865.0 t 0 0 0 0 0 0 1202.0 1617.0 852.0 45602.0 1173.0 7021.0 2105.0
MA1513.2_rc_shift1 (KLF15_rc)				; oligos_7nt_mkv1_m5 versus MA1513.2_rc (KLF15_rc); m=6/16; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score=0.453902; -GGGCGGGg---- ; cor=; Ncor= a 0 3.0 1.0 11.0 0.0 0.0 3.0 9.0 1809.0 0 0 0 0 c 0 100.0 359.0 2.0 11369.0 1.0 333.0 86.0 2117.0 0 0 0 0 g 0 11254.0 10954.0 11345.0 0.0 11368.0 10940.0 11234.0 6506.0 0 0 0 0 t 0 12.0 55.0 11.0 0.0 0.0 93.0 40.0 937.0 0 0 0 0
MA1959.2_shift1 (KLF7)				; oligos_7nt_mkv1_m5 versus MA1959.2 (KLF7); m=7/16; ncol2=8; w=-1; offset=-1; strand=D; shift=1; score=0.435839; -GGGCGKgG---- ; cor=; Ncor= a 0 1.0 1.0 1.0 45.0 1.0 1.0 150.0 1.0 0 0 0 0 c 0 1.0 1.0 1.0 788.0 1.0 25.0 42.0 1.0 0 0 0 0 g 0 997.0 997.0 997.0 1.0 997.0 720.0 642.0 997.0 0 0 0 0 t 0 1.0 1.0 1.0 167.0 1.0 254.0 167.0 1.0 0 0 0 0
MA0493.3_shift1 (KLF1)				; oligos_7nt_mkv1_m5 versus MA0493.3 (KLF1); m=8/16; ncol2=8; w=-1; offset=-1; strand=D; shift=1; score=0.424739; -GGGyGkGG---- ; cor=; Ncor= a 0 1.0 1.0 1.0 125.0 1.0 1.0 82.0 1.0 0 0 0 0 c 0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 1.0 0 0 0 0 g 0 998.0 998.0 998.0 1.0 998.0 675.0 896.0 998.0 0 0 0 0 t 0 1.0 1.0 1.0 346.0 1.0 324.0 21.0 1.0 0 0 0 0
MA1965.2_rc_shift7 (SP5_rc)				; oligos_7nt_mkv1_m5 versus MA1965.2_rc (SP5_rc); m=9/16; ncol2=6; w=0; offset=5; strand=R; shift=7; score=0.423395; -------GGGAGG ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 0.0 0.0 20465.0 0.0 4.0 c 0 0 0 0 0 0 0 92.0 234.0 0.0 231.0 403.0 3.0 g 0 0 0 0 0 0 0 20604.0 20451.0 20649.0 0.0 20286.0 20683.0 t 0 0 0 0 0 0 0 0.0 11.0 47.0 0.0 7.0 6.0
MA0742.2_shift0 (KLF12)				; oligos_7nt_mkv1_m5 versus MA0742.2 (KLF12); m=10/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.422375; GGGGCGGGG---- ; cor=; Ncor= a 101.948 86.3636 0.649351 0.649351 47.4026 0.649351 5.84416 68.1818 0.649351 0 0 0 0 c 0.649351 0.649351 0.649351 0.649351 951.299 0.649351 78.5714 0.649351 0.649351 0 0 0 0 g 709.74 912.338 998.052 998.052 0.649351 998.052 725.325 930.519 969.481 0 0 0 0 t 187.662 0.649351 0.649351 0.649351 0.649351 0.649351 190.26 0.649351 29.2208 0 0 0 0
MA1578.2_rc_shift3 (VEZF1_rc)				; oligos_7nt_mkv1_m5 versus MA1578.2_rc (VEZF1_rc); m=11/16; ncol2=6; w=0; offset=1; strand=R; shift=3; score=0.415686; ---GGGGGG---- ; cor=; Ncor= a 0 0 0 8.0 4.0 0.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 3.0 0.0 0.0 0.0 0.0 137.0 0 0 0 0 g 0 0 0 977.0 989.0 997.0 995.0 997.0 790.0 0 0 0 0 t 0 0 0 10.0 6.0 2.0 4.0 1.0 71.0 0 0 0 0
MA1511.2_shift0 (KLF10)				; oligos_7nt_mkv1_m5 versus MA1511.2 (KLF10); m=12/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.411659; GGGGCGKGG---- ; cor=; Ncor= a 75.2427 0.809061 0.809061 0.809061 42.8803 0.809061 0.809061 65.534 65.534 0 0 0 0 c 0.809061 0.809061 0.809061 0.809061 803.398 0.809061 52.589 0.809061 0.809061 0 0 0 0 g 819.579 997.573 997.573 997.573 0.809061 997.573 693.366 906.958 884.304 0 0 0 0 t 104.369 0.809061 0.809061 0.809061 152.913 0.809061 253.236 26.699 49.3528 0 0 0 0
MA0516.3_shift0 (SP2)				; oligos_7nt_mkv1_m5 versus MA0516.3 (SP2); m=13/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.411654; GGGGCGGGg---- ; cor=; Ncor= a 153.226 167.889 0.733138 0.733138 112.17 0.733138 0.733138 120.968 206.012 0 0 0 0 c 0.733138 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 164.956 0 0 0 0 g 766.129 830.645 997.801 997.801 0.733138 997.801 974.34 877.566 610.704 0 0 0 0 t 79.912 0.733138 0.733138 0.733138 0.733138 0.733138 24.1935 0.733138 18.3284 0 0 0 0
MA0685.2_shift0 (SP4)				; oligos_7nt_mkv1_m5 versus MA0685.2 (SP4); m=14/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.406527; gGGGMGGrG---- ; cor=; Ncor= a 149.038 0.686813 0.686813 0.686813 275.412 0.686813 0.686813 289.148 0.686813 0 0 0 0 c 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 0 0 g 654.533 997.94 997.94 997.94 0.686813 997.94 921.016 660.027 997.94 0 0 0 0 t 195.742 0.686813 0.686813 0.686813 0.686813 0.686813 77.6099 50.1374 0.686813 0 0 0 0
MA0740.2_shift0 (KLF14)				; oligos_7nt_mkv1_m5 versus MA0740.2 (KLF14); m=15/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.405247; kGGGCGKGG---- ; cor=; Ncor= a 31.158 0.635877 0.635877 0.635877 94.9046 0.635877 0.635877 107.705 198.614 0 0 0 0 c 0.635877 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 62.0884 0 0 0 0 g 619.525 998.092 998.092 998.092 0.635877 998.092 717.898 891.023 738.662 0 0 0 0 t 348.681 0.635877 0.635877 0.635877 90.067 0.635877 280.83 0.635877 0.635877 0 0 0 0
MA0079.5_shift0 (SP1)				; oligos_7nt_mkv1_m5 versus MA0079.5 (SP1); m=16/16; ncol2=9; w=-2; offset=-2; strand=D; shift=0; score=0.402406; GGGGMGGrG---- ; cor=; Ncor= a 1.05485 1.05485 1.05485 1.05485 266.878 1.05485 1.05485 254.219 161.392 0 0 0 0 c 1.05485 1.05485 1.05485 1.05485 731.013 1.05485 85.443 51.6878 1.05485 0 0 0 0 g 950.422 996.835 996.835 996.835 1.05485 996.835 912.447 659.283 836.498 0 0 0 0 t 47.4684 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 34.8101 1.05485 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m3_shift1 (oligos_7nt_mkv1_m3)				; oligos_7nt_mkv1_m3; m=0 (reference); ncol1=11; shift=1; ncol=12; -ttCCCTGCCyw ; Alignment reference a 0 1 1 0 0 0 0 0 0 0 0 3 c 0 1 1 5 5 5 1 0 5 4 3 0 g 0 1 1 0 0 0 0 5 0 0 0 0 t 0 2 2 0 0 0 4 0 0 1 2 2
MA0599.1_shift2 (KLF5)				; oligos_7nt_mkv1_m3 versus MA0599.1 (KLF5); m=1/18; ncol2=10; w=0; offset=1; strand=D; shift=2; score=0.642991; --gCCMCrCCCh ; cor=; Ncor= a 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 c 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 g 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 t 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0
MA0742.2_rc_shift3 (KLF12_rc)				; oligos_7nt_mkv1_m3 versus MA0742.2_rc (KLF12_rc); m=2/18; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.628862; ---CCCCGCCCC ; cor=; Ncor= a 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 c 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 g 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 t 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948
MA2125.1_shift1 (Zfp809)				; oligos_7nt_mkv1_m3 versus MA2125.1 (Zfp809); m=3/18; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.626992; -wTCCCAGCc-- ; cor=; Ncor= a 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 217.0 0 0 c 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 1091.0 0 0 g 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 115.0 0 0 t 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0 242.0 0 0
MA0740.2_rc_shift3 (KLF14_rc)				; oligos_7nt_mkv1_m3 versus MA0740.2_rc (KLF14_rc); m=4/18; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.606817; ---CCMCGCCCm ; cor=; Ncor= a 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 c 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 g 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 t 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158
MA0685.2_rc_shift3 (SP4_rc)				; oligos_7nt_mkv1_m3 versus MA0685.2_rc (SP4_rc); m=5/18; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.605118; ---CyCCKCCCc ; cor=; Ncor= a 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 c 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 g 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 t 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038
MA0516.3_rc_shift3 (SP2_rc)				; oligos_7nt_mkv1_m3 versus MA0516.3_rc (SP2_rc); m=6/18; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.604997; ---cCCCGCCCC ; cor=; Ncor= a 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 c 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 g 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 t 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226
MA0597.3_rc_shift1 (THAP1_rc)				; oligos_7nt_mkv1_m3 versus MA0597.3_rc (THAP1_rc); m=7/18; ncol2=8; w=0; offset=0; strand=R; shift=1; score=0.591962; -TGCCCTgc--- ; cor=; Ncor= a 0 11.0 115.0 78.0 62.0 71.0 8.0 341.0 549.0 0 0 0 c 0 172.0 104.0 4942.0 4893.0 4958.0 220.0 933.0 3186.0 0 0 0 g 0 95.0 4861.0 67.0 183.0 127.0 219.0 3351.0 966.0 0 0 0 t 0 4900.0 98.0 91.0 40.0 22.0 4731.0 553.0 477.0 0 0 0
MA1513.2_shift3 (KLF15)				; oligos_7nt_mkv1_m3 versus MA1513.2 (KLF15); m=8/18; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.589675; ---cCCCGCCC- ; cor=; Ncor= a 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 c 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 g 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 t 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0
MA1511.2_rc_shift3 (KLF10_rc)				; oligos_7nt_mkv1_m3 versus MA1511.2_rc (KLF10_rc); m=9/18; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.586022; ---CCMCGCCCC ; cor=; Ncor= a 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 c 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 g 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 t 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427
MA1961.2_rc_shift2 (PATZ1_rc)				; oligos_7nt_mkv1_m3 versus MA1961.2_rc (PATZ1_rc); m=10/18; ncol2=11; w=0; offset=1; strand=R; shift=2; score=0.584008; --sCCCCkCCCC ; cor=; Ncor= a 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 c 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 g 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 t 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0
MA1959.2_rc_shift3 (KLF7_rc)				; oligos_7nt_mkv1_m3 versus MA1959.2_rc (KLF7_rc); m=11/18; ncol2=8; w=0; offset=2; strand=R; shift=3; score=0.569856; ---CcMCGCCC- ; cor=; Ncor= a 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 c 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 g 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 t 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0
MA0493.3_rc_shift3 (KLF1_rc)				; oligos_7nt_mkv1_m3 versus MA0493.3_rc (KLF1_rc); m=12/18; ncol2=8; w=0; offset=2; strand=R; shift=3; score=0.557081; ---CCmCrCCC- ; cor=; Ncor= a 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 c 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 g 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 t 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0
MA2341.1_shift3 (FEZF2)				; oligos_7nt_mkv1_m3 versus MA2341.1 (FEZF2); m=13/18; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.553771; ---CCCAGCCT- ; cor=; Ncor= a 0 0 0 17.0 5.0 4.0 231.0 6.0 8.0 7.0 14.0 0 c 0 0 0 202.0 206.0 258.0 15.0 8.0 224.0 247.0 10.0 0 g 0 0 0 10.0 9.0 0.0 14.0 251.0 28.0 2.0 8.0 0 t 0 0 0 36.0 45.0 3.0 5.0 0.0 5.0 9.0 233.0 0
MA1102.3_rc_shift0 (CTCFL_rc)				; oligos_7nt_mkv1_m3 versus MA1102.3_rc (CTCFL_rc); m=14/18; ncol2=8; w=-1; offset=-1; strand=R; shift=0; score=0.449703; GCCCCCTG---- ; cor=; Ncor= a 195.0 415.0 258.0 1122.0 242.0 185.0 25.0 1836.0 0 0 0 0 c 68.0 17001.0 16819.0 15425.0 16511.0 17285.0 329.0 2033.0 0 0 0 0 g 17593.0 270.0 767.0 1141.0 600.0 481.0 413.0 12867.0 0 0 0 0 t 181.0 351.0 193.0 349.0 684.0 86.0 17270.0 1301.0 0 0 0 0
MA0670.2_shift6 (NFIA)				; oligos_7nt_mkv1_m3 versus MA0670.2 (NFIA); m=15/18; ncol2=6; w=0; offset=5; strand=D; shift=6; score=0.407678; ------TGCCAA ; cor=; Ncor= a 0 0 0 0 0 0 0.0 0.0 0.0 0.0 89071.0 89418.0 c 0 0 0 0 0 0 0.0 0.0 93597.0 93394.0 0.0 0.0 g 0 0 0 0 0 0 0.0 98253.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 0 95496.0 0.0 0.0 0.0 0.0 0.0
MA1965.2_shift4 (SP5)				; oligos_7nt_mkv1_m3 versus MA1965.2 (SP5); m=16/18; ncol2=6; w=0; offset=3; strand=D; shift=4; score=0.404327; ----CCTCCC-- ; cor=; Ncor= a 0 0 0 0 6.0 7.0 0.0 47.0 11.0 0.0 0 0 c 0 0 0 0 20683.0 20286.0 0.0 20649.0 20451.0 20604.0 0 0 g 0 0 0 0 3.0 403.0 231.0 0.0 234.0 92.0 0 0 t 0 0 0 0 4.0 0.0 20465.0 0.0 0.0 0.0 0 0
MA0738.2_shift5 (HIC2)				; oligos_7nt_mkv1_m3 versus MA0738.2 (HIC2); m=17/18; ncol2=6; w=0; offset=4; strand=D; shift=5; score=0.40293; -----rTGCCM- ; cor=; Ncor= a 0 0 0 0 0 2606.0 0.0 494.0 23.0 435.0 1466.0 0 c 0 0 0 0 0 394.0 117.0 354.0 4891.0 4891.0 3425.0 0 g 0 0 0 0 0 2285.0 0.0 4891.0 14.0 0.0 0.0 0 t 0 0 0 0 0 367.0 4891.0 151.0 0.0 59.0 0.0 0
MA2337.1_rc_shift6 (Nr1h3_rc)				; oligos_7nt_mkv1_m3 versus MA2337.1_rc (Nr1h3_rc); m=18/18; ncol2=6; w=0; offset=5; strand=R; shift=6; score=0.402451; ------TGmCCT ; cor=; Ncor= a 0 0 0 0 0 0 1.0 5.0 2247.0 4.0 3.0 0.0 c 0 0 0 0 0 0 19.0 1.0 1600.0 3839.0 3832.0 35.0 g 0 0 0 0 0 0 6.0 3851.0 5.0 17.0 27.0 31.0 t 0 0 0 0 0 0 3836.0 5.0 10.0 2.0 0.0 3796.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m1_shift0 (oligos_7nt_mkv1_m1)				; oligos_7nt_mkv1_m1; m=0 (reference); ncol1=12; shift=0; ncol=12; srAGAGTCAAmw ; Alignment reference a 0 1 2 0 2 0 0 0 2 2 1 1 c 1 0 0 0 0 0 0 2 0 0 1 0 g 1 1 0 2 0 2 0 0 0 0 0 0 t 0 0 0 0 0 0 2 0 0 0 0 1
MA0676.1_shift1 (Nr2e1)				; oligos_7nt_mkv1_m1 versus MA0676.1 (Nr2e1); m=1/12; ncol2=9; w=0; offset=1; strand=D; shift=1; score=0.594694; -aaAAGTCAA-- ; cor=; Ncor= a 0 1118.0 1118.0 1118.0 1118.0 40.0 0.0 11.0 1118.0 1118.0 0 0 c 0 244.0 89.0 1.0 0.0 0.0 58.0 1118.0 0.0 131.0 0 0 g 0 191.0 448.0 101.0 74.0 1118.0 0.0 12.0 0.0 117.0 0 0 t 0 401.0 369.0 19.0 5.0 8.0 1118.0 112.0 0.0 247.0 0 0
MA1657.2_shift1 (ZNF652)				; oligos_7nt_mkv1_m1 versus MA1657.2 (ZNF652); m=2/12; ncol2=9; w=0; offset=1; strand=D; shift=1; score=0.576976; -AAGrGTTAA-- ; cor=; Ncor= a 0 11418.0 11220.0 267.0 7606.0 178.0 220.0 240.0 11708.0 9189.0 0 0 c 0 372.0 89.0 573.0 106.0 109.0 155.0 274.0 215.0 1216.0 0 0 g 0 317.0 660.0 10998.0 4279.0 11940.0 182.0 249.0 205.0 1032.0 0 0 t 0 266.0 404.0 535.0 382.0 146.0 11816.0 11610.0 245.0 936.0 0 0
MA0489.3_rc_shift1 (Jun_rc)				; oligos_7nt_mkv1_m1 versus MA0489.3_rc (Jun_rc); m=3/12; ncol2=8; w=0; offset=1; strand=R; shift=1; score=0.526491; -aTGAGTCA--- ; cor=; Ncor= a 0 61451.0 1633.0 969.0 89140.0 4185.0 1648.0 2739.0 91503.0 0 0 0 c 0 13040.0 1147.0 1228.0 1009.0 14953.0 1717.0 88928.0 718.0 0 0 0 g 0 14637.0 1827.0 88215.0 920.0 71105.0 1493.0 1468.0 716.0 0 0 0 t 0 4975.0 89496.0 3691.0 3034.0 3860.0 89245.0 968.0 1166.0 0 0 0
MA0476.2_rc_shift1 (FOS_rc)				; oligos_7nt_mkv1_m1 versus MA0476.2_rc (FOS_rc); m=4/12; ncol2=8; w=0; offset=1; strand=R; shift=1; score=0.500416; -ATGAsTCA--- ; cor=; Ncor= a 0 21777.0 0.0 0.0 29396.0 3113.0 0.0 2288.0 29396.0 0 0 0 c 0 1538.0 0.0 0.0 0.0 11206.0 0.0 27108.0 0.0 0 0 0 g 0 5823.0 0.0 29396.0 0.0 14079.0 0.0 0.0 0.0 0 0 0 t 0 258.0 29396.0 0.0 0.0 998.0 29396.0 0.0 0.0 0 0 0
MA0835.3_rc_shift2 (BATF3_rc)				; oligos_7nt_mkv1_m1 versus MA0835.3_rc (BATF3_rc); m=5/12; ncol2=7; w=0; offset=2; strand=R; shift=2; score=0.465653; --TGAGTCA--- ; cor=; Ncor= a 0 0 235.0 282.0 11502.0 408.0 116.0 1238.0 11737.0 0 0 0 c 0 0 117.0 88.0 117.0 560.0 87.0 10420.0 37.0 0 0 0 g 0 0 84.0 10347.0 79.0 10589.0 92.0 62.0 59.0 0 0 0 t 0 0 11529.0 1248.0 267.0 408.0 11670.0 245.0 132.0 0 0 0
MA1928.2_shift2 (BNC2)				; oligos_7nt_mkv1_m1 versus MA1928.2 (BNC2); m=6/12; ncol2=7; w=0; offset=2; strand=D; shift=2; score=0.465373; --TGAGTCA--- ; cor=; Ncor= a 0 0 147.0 134.0 5303.0 227.0 86.0 216.0 5483.0 0 0 0 c 0 0 66.0 72.0 117.0 838.0 106.0 5238.0 54.0 0 0 0 g 0 0 96.0 5184.0 61.0 4332.0 80.0 112.0 56.0 0 0 0 t 0 0 5363.0 282.0 191.0 275.0 5400.0 106.0 79.0 0 0 0
MA1988.2_rc_shift2 (Atf3_rc)				; oligos_7nt_mkv1_m1 versus MA1988.2_rc (Atf3_rc); m=7/12; ncol2=7; w=0; offset=2; strand=R; shift=2; score=0.464102; --TGAGTCA--- ; cor=; Ncor= a 0 0 887.0 2087.0 50485.0 2262.0 547.0 3914.0 53085.0 0 0 0 c 0 0 1086.0 574.0 1365.0 4498.0 471.0 48774.0 357.0 0 0 0 g 0 0 673.0 46610.0 504.0 45670.0 356.0 443.0 669.0 0 0 0 t 0 0 52046.0 5421.0 2338.0 2262.0 53318.0 1561.0 581.0 0 0 0
MA0462.3_rc_shift2 (BATF::JUN_rc)				; oligos_7nt_mkv1_m1 versus MA0462.3_rc (BATF::JUN_rc); m=8/12; ncol2=7; w=0; offset=2; strand=R; shift=2; score=0.461896; --TGAGTCA--- ; cor=; Ncor= a 0 0 558.0 907.0 36619.0 1399.0 320.0 3785.0 37330.0 0 0 0 c 0 0 424.0 522.0 539.0 4188.0 350.0 33135.0 182.0 0 0 0 g 0 0 318.0 32770.0 241.0 31168.0 204.0 400.0 275.0 0 0 0 t 0 0 36854.0 3955.0 755.0 1399.0 37280.0 834.0 367.0 0 0 0
MA1634.2_rc_shift2 (BATF_rc)				; oligos_7nt_mkv1_m1 versus MA1634.2_rc (BATF_rc); m=9/12; ncol2=7; w=0; offset=2; strand=R; shift=2; score=0.460907; --TGAGTCA--- ; cor=; Ncor= a 0 0 754.0 1276.0 44736.0 2051.0 471.0 4682.0 45887.0 0 0 0 c 0 0 507.0 711.0 836.0 5573.0 341.0 40617.0 283.0 0 0 0 g 0 0 431.0 40279.0 306.0 37333.0 250.0 570.0 355.0 0 0 0 t 0 0 45316.0 4742.0 1130.0 2051.0 45946.0 1139.0 483.0 0 0 0
MA0848.1_shift5 (FOXO4)				; oligos_7nt_mkv1_m1 versus MA0848.1 (FOXO4); m=10/12; ncol2=7; w=0; offset=5; strand=D; shift=5; score=0.421496; -----GTAAACA ; cor=; Ncor= a 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 c 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 g 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 t 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0
MA0849.1_shift5 (FOXO6)				; oligos_7nt_mkv1_m1 versus MA0849.1 (FOXO6); m=11/12; ncol2=7; w=0; offset=5; strand=D; shift=5; score=0.41787; -----GTAAACA ; cor=; Ncor= a 0 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 c 0 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 g 0 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 t 0 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0
MA0042.2_shift5 (FOXI1)				; oligos_7nt_mkv1_m1 versus MA0042.2 (FOXI1); m=12/12; ncol2=7; w=0; offset=5; strand=D; shift=5; score=0.415589; -----GTAAACA ; cor=; Ncor= a 0 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 c 0 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 g 0 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 t 0 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m2_shift2 (oligos_6nt_mkv1_m2)				; oligos_6nt_mkv1_m2; m=0 (reference); ncol1=10; shift=2; ncol=12; --AGAGTCAAmw ; Alignment reference a 0 0 2 0 2 0 0 0 2 2 1 1 c 0 0 0 0 0 0 0 2 0 0 1 0 g 0 0 0 2 0 2 0 0 0 0 0 0 t 0 0 0 0 0 0 2 0 0 0 0 1
MA0676.1_shift1 (Nr2e1)				; oligos_6nt_mkv1_m2 versus MA0676.1 (Nr2e1); m=1/14; ncol2=9; w=-1; offset=-1; strand=D; shift=1; score=0.586274; -aaAAGTCAA-- ; cor=; Ncor= a 0 1118.0 1118.0 1118.0 1118.0 40.0 0.0 11.0 1118.0 1118.0 0 0 c 0 244.0 89.0 1.0 0.0 0.0 58.0 1118.0 0.0 131.0 0 0 g 0 191.0 448.0 101.0 74.0 1118.0 0.0 12.0 0.0 117.0 0 0 t 0 401.0 369.0 19.0 5.0 8.0 1118.0 112.0 0.0 247.0 0 0
MA1657.2_shift1 (ZNF652)				; oligos_6nt_mkv1_m2 versus MA1657.2 (ZNF652); m=2/14; ncol2=9; w=-1; offset=-1; strand=D; shift=1; score=0.57761; -AAGrGTTAA-- ; cor=; Ncor= a 0 11418.0 11220.0 267.0 7606.0 178.0 220.0 240.0 11708.0 9189.0 0 0 c 0 372.0 89.0 573.0 106.0 109.0 155.0 274.0 215.0 1216.0 0 0 g 0 317.0 660.0 10998.0 4279.0 11940.0 182.0 249.0 205.0 1032.0 0 0 t 0 266.0 404.0 535.0 382.0 146.0 11816.0 11610.0 245.0 936.0 0 0
MA0835.3_rc_shift2 (BATF3_rc)				; oligos_6nt_mkv1_m2 versus MA0835.3_rc (BATF3_rc); m=3/14; ncol2=7; w=0; offset=0; strand=R; shift=2; score=0.558784; --TGAGTCA--- ; cor=; Ncor= a 0 0 235.0 282.0 11502.0 408.0 116.0 1238.0 11737.0 0 0 0 c 0 0 117.0 88.0 117.0 560.0 87.0 10420.0 37.0 0 0 0 g 0 0 84.0 10347.0 79.0 10589.0 92.0 62.0 59.0 0 0 0 t 0 0 11529.0 1248.0 267.0 408.0 11670.0 245.0 132.0 0 0 0
MA1928.2_shift2 (BNC2)				; oligos_6nt_mkv1_m2 versus MA1928.2 (BNC2); m=4/14; ncol2=7; w=0; offset=0; strand=D; shift=2; score=0.558448; --TGAGTCA--- ; cor=; Ncor= a 0 0 147.0 134.0 5303.0 227.0 86.0 216.0 5483.0 0 0 0 c 0 0 66.0 72.0 117.0 838.0 106.0 5238.0 54.0 0 0 0 g 0 0 96.0 5184.0 61.0 4332.0 80.0 112.0 56.0 0 0 0 t 0 0 5363.0 282.0 191.0 275.0 5400.0 106.0 79.0 0 0 0
MA1988.2_rc_shift2 (Atf3_rc)				; oligos_6nt_mkv1_m2 versus MA1988.2_rc (Atf3_rc); m=5/14; ncol2=7; w=0; offset=0; strand=R; shift=2; score=0.556923; --TGAGTCA--- ; cor=; Ncor= a 0 0 887.0 2087.0 50485.0 2262.0 547.0 3914.0 53085.0 0 0 0 c 0 0 1086.0 574.0 1365.0 4498.0 471.0 48774.0 357.0 0 0 0 g 0 0 673.0 46610.0 504.0 45670.0 356.0 443.0 669.0 0 0 0 t 0 0 52046.0 5421.0 2338.0 2262.0 53318.0 1561.0 581.0 0 0 0
MA0462.3_rc_shift2 (BATF::JUN_rc)				; oligos_6nt_mkv1_m2 versus MA0462.3_rc (BATF::JUN_rc); m=6/14; ncol2=7; w=0; offset=0; strand=R; shift=2; score=0.554275; --TGAGTCA--- ; cor=; Ncor= a 0 0 558.0 907.0 36619.0 1399.0 320.0 3785.0 37330.0 0 0 0 c 0 0 424.0 522.0 539.0 4188.0 350.0 33135.0 182.0 0 0 0 g 0 0 318.0 32770.0 241.0 31168.0 204.0 400.0 275.0 0 0 0 t 0 0 36854.0 3955.0 755.0 1399.0 37280.0 834.0 367.0 0 0 0
MA1634.2_rc_shift2 (BATF_rc)				; oligos_6nt_mkv1_m2 versus MA1634.2_rc (BATF_rc); m=7/14; ncol2=7; w=0; offset=0; strand=R; shift=2; score=0.553088; --TGAGTCA--- ; cor=; Ncor= a 0 0 754.0 1276.0 44736.0 2051.0 471.0 4682.0 45887.0 0 0 0 c 0 0 507.0 711.0 836.0 5573.0 341.0 40617.0 283.0 0 0 0 g 0 0 431.0 40279.0 306.0 37333.0 250.0 570.0 355.0 0 0 0 t 0 0 45316.0 4742.0 1130.0 2051.0 45946.0 1139.0 483.0 0 0 0
MA0489.3_rc_shift1 (Jun_rc)				; oligos_6nt_mkv1_m2 versus MA0489.3_rc (Jun_rc); m=8/14; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score=0.506886; -aTGAGTCA--- ; cor=; Ncor= a 0 61451.0 1633.0 969.0 89140.0 4185.0 1648.0 2739.0 91503.0 0 0 0 c 0 13040.0 1147.0 1228.0 1009.0 14953.0 1717.0 88928.0 718.0 0 0 0 g 0 14637.0 1827.0 88215.0 920.0 71105.0 1493.0 1468.0 716.0 0 0 0 t 0 4975.0 89496.0 3691.0 3034.0 3860.0 89245.0 968.0 1166.0 0 0 0
MA0848.1_shift5 (FOXO4)				; oligos_6nt_mkv1_m2 versus MA0848.1 (FOXO4); m=9/14; ncol2=7; w=0; offset=3; strand=D; shift=5; score=0.505796; -----GTAAACA ; cor=; Ncor= a 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 c 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 g 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 t 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0
MA0849.1_shift5 (FOXO6)				; oligos_6nt_mkv1_m2 versus MA0849.1 (FOXO6); m=10/14; ncol2=7; w=0; offset=3; strand=D; shift=5; score=0.501444; -----GTAAACA ; cor=; Ncor= a 0 0 0 0 0 1445.0 154.0 7025.0 7025.0 7025.0 0.0 7025.0 c 0 0 0 0 0 0.0 0.0 1147.0 195.0 0.0 7025.0 0.0 g 0 0 0 0 0 7025.0 32.0 7.0 0.0 0.0 31.0 13.0 t 0 0 0 0 0 0.0 7025.0 0.0 26.0 0.0 385.0 0.0
MA0042.2_shift5 (FOXI1)				; oligos_6nt_mkv1_m2 versus MA0042.2 (FOXI1); m=11/14; ncol2=7; w=0; offset=3; strand=D; shift=5; score=0.498706; -----GTAAACA ; cor=; Ncor= a 0 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 c 0 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 g 0 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 t 0 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0
MA0476.2_rc_shift1 (FOS_rc)				; oligos_6nt_mkv1_m2 versus MA0476.2_rc (FOS_rc); m=12/14; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score=0.478362; -ATGAsTCA--- ; cor=; Ncor= a 0 21777.0 0.0 0.0 29396.0 3113.0 0.0 2288.0 29396.0 0 0 0 c 0 1538.0 0.0 0.0 0.0 11206.0 0.0 27108.0 0.0 0 0 0 g 0 5823.0 0.0 29396.0 0.0 14079.0 0.0 0.0 0.0 0 0 0 t 0 258.0 29396.0 0.0 0.0 998.0 29396.0 0.0 0.0 0 0 0
MA0496.4_rc_shift0 (MAFK_rc)				; oligos_6nt_mkv1_m2 versus MA0496.4_rc (MAFK_rc); m=13/14; ncol2=10; w=-2; offset=-2; strand=R; shift=0; score=0.467401; GCTGAGTCAk-- ; cor=; Ncor= a 2285.0 4361.0 1910.0 1087.0 46798.0 2544.0 1274.0 2565.0 47492.0 3939.0 0 0 c 3327.0 44013.0 1267.0 957.0 1081.0 7573.0 1306.0 46695.0 1058.0 6706.0 0 0 g 43458.0 1921.0 882.0 47872.0 1133.0 39125.0 1670.0 1366.0 1568.0 27000.0 0 0 t 2664.0 1439.0 47675.0 1818.0 2722.0 2492.0 47484.0 1108.0 1616.0 14089.0 0 0
MA1994.2_rc_shift6 (Nkx2-1_rc)				; oligos_6nt_mkv1_m2 versus MA1994.2_rc (Nkx2-1_rc); m=14/14; ncol2=7; w=0; offset=4; strand=R; shift=6; score=0.404028; ------TCAAGT ; cor=; Ncor= a 0 0 0 0 0 0 541.0 518.0 15157.0 15106.0 316.0 343.0 c 0 0 0 0 0 0 213.0 14172.0 315.0 605.0 118.0 146.0 g 0 0 0 0 0 0 243.0 657.0 518.0 162.0 15640.0 275.0 t 0 0 0 0 0 0 15245.0 895.0 252.0 369.0 168.0 15478.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m1_shift3 (oligos_6nt_mkv1_m1)				; oligos_6nt_mkv1_m1; m=0 (reference); ncol1=10; shift=3; ncol=13; ---CCCGCTTATC ; Alignment reference a 0 0 0 0 0 0 0 0 0 0 1 0 0 c 0 0 0 1 1 1 0 1 0 0 0 0 1 g 0 0 0 0 0 0 1 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 1 1 0 1 0
MA0482.3_shift6 (GATA4)				; oligos_6nt_mkv1_m1 versus MA0482.3 (GATA4); m=1/14; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.548131; ------cCTTATC ; cor=; Ncor= a 0 0 0 0 0 0 3977.0 3150.0 1586.0 1650.0 54420.0 770.0 480.0 c 0 0 0 0 0 0 38289.0 50062.0 1429.0 1377.0 1703.0 582.0 56544.0 g 0 0 0 0 0 0 5099.0 1103.0 749.0 808.0 1245.0 539.0 568.0 t 0 0 0 0 0 0 11649.0 4699.0 55250.0 55179.0 1646.0 57123.0 1422.0
MA0037.5_shift6 (Gata3)				; oligos_6nt_mkv1_m1 versus MA0037.5 (Gata3); m=2/14; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.547248; ------tCTTATC ; cor=; Ncor= a 0 0 0 0 0 0 2016.0 946.0 794.0 984.0 22974.0 427.0 294.0 c 0 0 0 0 0 0 3859.0 19702.0 928.0 758.0 566.0 282.0 23839.0 g 0 0 0 0 0 0 2551.0 2165.0 280.0 960.0 528.0 291.0 255.0 t 0 0 0 0 0 0 16442.0 2055.0 22866.0 22166.0 800.0 23868.0 480.0
MA1104.3_shift6 (GATA6)				; oligos_6nt_mkv1_m1 versus MA1104.3 (GATA6); m=3/14; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.544143; ------TCTTATC ; cor=; Ncor= a 0 0 0 0 0 0 5912.0 4535.0 2560.0 5044.0 76686.0 1507.0 1096.0 c 0 0 0 0 0 0 11831.0 62936.0 1439.0 1393.0 815.0 852.0 75930.0 g 0 0 0 0 0 0 7066.0 6459.0 580.0 615.0 819.0 456.0 712.0 t 0 0 0 0 0 0 54635.0 5514.0 74865.0 72392.0 1124.0 76629.0 1706.0
MA1970.2_shift6 (TRPS1)				; oligos_6nt_mkv1_m1 versus MA1970.2 (TRPS1); m=4/14; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.543685; ------TCTTATC ; cor=; Ncor= a 0 0 0 0 0 0 1359.0 941.0 645.0 874.0 17440.0 312.0 252.0 c 0 0 0 0 0 0 2547.0 14262.0 560.0 462.0 215.0 265.0 17146.0 g 0 0 0 0 0 0 1749.0 1426.0 320.0 449.0 329.0 179.0 263.0 t 0 0 0 0 0 0 12628.0 1654.0 16758.0 16498.0 299.0 17527.0 622.0
MA0036.4_shift7 (GATA2)				; oligos_6nt_mkv1_m1 versus MA0036.4 (GATA2); m=5/14; ncol2=7; w=0; offset=4; strand=D; shift=7; score=0.541189; -------CTTATC ; cor=; Ncor= a 0 0 0 0 0 0 0 940.0 444.0 417.0 14098.0 145.0 96.0 c 0 0 0 0 0 0 0 10607.0 259.0 34.0 14.0 77.0 13786.0 g 0 0 0 0 0 0 0 1223.0 150.0 21.0 43.0 48.0 126.0 t 0 0 0 0 0 0 0 1443.0 13360.0 13741.0 58.0 13943.0 205.0
MA0124.3_shift4 (Nkx3-1)				; oligos_6nt_mkv1_m1 versus MA0124.3 (Nkx3-1); m=6/14; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.54102; ----cCACTTA-- ; cor=; Ncor= a 0 0 0 0 981.0 0.0 5335.0 59.0 0.0 0.0 5335.0 0 0 c 0 0 0 0 5335.0 5335.0 28.0 5335.0 1.0 254.0 273.0 0 0 g 0 0 0 0 1776.0 10.0 10.0 9.0 0.0 0.0 173.0 0 0 t 0 0 0 0 275.0 336.0 88.0 9.0 5335.0 5335.0 523.0 0 0
MA0766.3_rc_shift6 (GATA5_rc)				; oligos_6nt_mkv1_m1 versus MA0766.3_rc (GATA5_rc); m=7/14; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.537429; ------ysTTATC ; cor=; Ncor= a 0 0 0 0 0 0 668.0 586.0 204.0 331.0 15369.0 0.0 0.0 c 0 0 0 0 0 0 8179.0 7774.0 200.0 0.0 0.0 0.0 15369.0 g 0 0 0 0 0 0 3215.0 7594.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 0 7190.0 212.0 15369.0 15369.0 0.0 15369.0 0.0
MA0767.2_rc_shift2 (GCM2_rc)				; oligos_6nt_mkv1_m1 versus MA0767.2_rc (GCM2_rc); m=8/14; ncol2=8; w=-1; offset=-1; strand=R; shift=2; score=0.497998; --rCCCGCAT--- ; cor=; Ncor= a 0 0 1320.0 0.0 13.0 66.0 127.0 0.0 1320.0 45.0 0 0 0 c 0 0 91.0 1320.0 1320.0 1320.0 138.0 1320.0 24.0 299.0 0 0 0 g 0 0 533.0 0.0 0.0 1.0 1320.0 32.0 41.0 77.0 0 0 0 t 0 0 92.0 1.0 0.0 51.0 84.0 263.0 23.0 1320.0 0 0 0
MA0035.5_shift7 (GATA1)				; oligos_6nt_mkv1_m1 versus MA0035.5 (GATA1); m=9/14; ncol2=7; w=0; offset=4; strand=D; shift=7; score=0.47893; -------CTWATC ; cor=; Ncor= a 0 0 0 0 0 0 0 3953.0 1314.0 49692.0 67550.0 2206.0 2567.0 c 0 0 0 0 0 0 0 62419.0 595.0 710.0 1292.0 1238.0 65937.0 g 0 0 0 0 0 0 0 2712.0 652.0 856.0 988.0 618.0 1471.0 t 0 0 0 0 0 0 0 2744.0 69267.0 20570.0 1998.0 67766.0 1853.0
MA0877.4_shift5 (BARHL1)				; oligos_6nt_mkv1_m1 versus MA0877.4 (BARHL1); m=10/14; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.47409; -----CGTTTA-- ; cor=; Ncor= a 0 0 0 0 0 202.0 833.0 281.0 0.0 96.0 3960.0 0 0 c 0 0 0 0 0 3960.0 34.0 223.0 4.0 9.0 16.0 0 0 g 0 0 0 0 0 3.0 3960.0 33.0 0.0 0.0 26.0 0 0 t 0 0 0 0 0 26.0 46.0 3960.0 3960.0 3960.0 125.0 0 0
MA0635.2_rc_shift5 (BARHL2_rc)				; oligos_6nt_mkv1_m1 versus MA0635.2_rc (BARHL2_rc); m=11/14; ncol2=6; w=0; offset=2; strand=R; shift=5; score=0.463612; -----CrTTTA-- ; cor=; Ncor= a 0 0 0 0 0 1335.0 7756.0 4032.0 0.0 1969.0 12855.0 0 0 c 0 0 0 0 0 12855.0 127.0 1086.0 0.0 0.0 0.0 0 0 g 0 0 0 0 0 0.0 12855.0 116.0 0.0 0.0 0.0 0 0 t 0 0 0 0 0 1570.0 443.0 12855.0 12855.0 12855.0 643.0 0 0
MA1122.2_rc_shift1 (TFDP1_rc)				; oligos_6nt_mkv1_m1 versus MA1122.2_rc (TFDP1_rc); m=12/14; ncol2=8; w=-2; offset=-2; strand=R; shift=1; score=0.433458; -TTCCCGCs---- ; cor=; Ncor= a 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 0 c 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 0 g 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 0 t 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0 0
MA0914.2_shift5 (ISL2)				; oligos_6nt_mkv1_m1 versus MA0914.2 (ISL2); m=13/14; ncol2=6; w=0; offset=2; strand=D; shift=5; score=0.425612; -----CAmTTA-- ; cor=; Ncor= a 0 0 0 0 0 160.0 5631.0 3161.0 218.0 278.0 5631.0 0 0 c 0 0 0 0 0 5631.0 162.0 5631.0 130.0 718.0 206.0 0 0 g 0 0 0 0 0 126.0 134.0 171.0 169.0 13.0 59.0 0 0 t 0 0 0 0 0 1019.0 248.0 398.0 5631.0 5631.0 1354.0 0 0
MA0646.2_rc_shift0 (GCM1_rc)				; oligos_6nt_mkv1_m1 versus MA0646.2_rc (GCM1_rc); m=14/14; ncol2=10; w=-3; offset=-3; strand=R; shift=0; score=0.417404; gtACCCGCAT--- ; cor=; Ncor= a 2409.0 2014.0 21439.0 10.0 35.0 3815.0 880.0 15.0 21439.0 261.0 0 0 0 c 4829.0 7971.0 147.0 21439.0 21439.0 21439.0 572.0 21439.0 96.0 4010.0 0 0 0 g 13412.0 2905.0 4992.0 18.0 4.0 255.0 21439.0 274.0 154.0 1811.0 0 0 0 t 789.0 21439.0 146.0 0.0 0.0 594.0 1002.0 4371.0 161.0 21439.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m2_shift3 (oligos_7nt_mkv1_m2)				; oligos_7nt_mkv1_m2; m=0 (reference); ncol1=13; shift=3; ncol=16; ---GTGATAAGCGGGG ; Alignment reference a 0 0 0 0 0 0 1 0 1 1 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 g 0 0 0 1 0 1 0 0 0 0 1 0 1 1 1 1 t 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0
MA0766.3_shift4 (GATA5)				; oligos_7nt_mkv1_m2 versus MA0766.3 (GATA5); m=1/8; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.497949; ----wGATAAsr---- ; cor=; Ncor= a 0 0 0 0 8021.0 0.0 15369.0 0.0 15369.0 15369.0 212.0 7190.0 0 0 0 0 c 0 0 0 0 2328.0 0.0 0.0 0.0 0.0 0.0 7594.0 3215.0 0 0 0 0 g 0 0 0 0 52.0 15369.0 0.0 0.0 0.0 200.0 7774.0 8179.0 0 0 0 0 t 0 0 0 0 7348.0 0.0 0.0 15369.0 331.0 204.0 586.0 668.0 0 0 0 0
MA0036.4_rc_shift4 (GATA2_rc)				; oligos_7nt_mkv1_m2 versus MA0036.4_rc (GATA2_rc); m=2/8; ncol2=7; w=0; offset=1; strand=R; shift=4; score=0.462155; ----AGATAAG----- ; cor=; Ncor= a 0 0 0 0 10981.0 205.0 13943.0 58.0 13741.0 13360.0 1443.0 0 0 0 0 0 c 0 0 0 0 367.0 126.0 48.0 43.0 21.0 150.0 1223.0 0 0 0 0 0 g 0 0 0 0 492.0 13786.0 77.0 14.0 34.0 259.0 10607.0 0 0 0 0 0 t 0 0 0 0 2373.0 96.0 145.0 14098.0 417.0 444.0 940.0 0 0 0 0 0
MA1104.3_rc_shift4 (GATA6_rc)				; oligos_7nt_mkv1_m2 versus MA1104.3_rc (GATA6_rc); m=3/8; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.459932; ----AGATAAGA---- ; cor=; Ncor= a 0 0 0 0 61257.0 1706.0 76629.0 1124.0 72392.0 74865.0 5514.0 54635.0 0 0 0 0 c 0 0 0 0 1810.0 712.0 456.0 819.0 615.0 580.0 6459.0 7066.0 0 0 0 0 g 0 0 0 0 3228.0 75930.0 852.0 815.0 1393.0 1439.0 62936.0 11831.0 0 0 0 0 t 0 0 0 0 13149.0 1096.0 1507.0 76686.0 5044.0 2560.0 4535.0 5912.0 0 0 0 0
MA1970.2_rc_shift4 (TRPS1_rc)				; oligos_7nt_mkv1_m2 versus MA1970.2_rc (TRPS1_rc); m=4/8; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.45766; ----AGATAAGA---- ; cor=; Ncor= a 0 0 0 0 13985.0 622.0 17527.0 299.0 16498.0 16758.0 1654.0 12628.0 0 0 0 0 c 0 0 0 0 716.0 263.0 179.0 329.0 449.0 320.0 1426.0 1749.0 0 0 0 0 g 0 0 0 0 792.0 17146.0 265.0 215.0 462.0 560.0 14262.0 2547.0 0 0 0 0 t 0 0 0 0 2790.0 252.0 312.0 17440.0 874.0 645.0 941.0 1359.0 0 0 0 0
MA0482.3_rc_shift4 (GATA4_rc)				; oligos_7nt_mkv1_m2 versus MA0482.3_rc (GATA4_rc); m=5/8; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.455887; ----AGATAAGg---- ; cor=; Ncor= a 0 0 0 0 48187.0 1422.0 57123.0 1646.0 55179.0 55250.0 4699.0 11649.0 0 0 0 0 c 0 0 0 0 1376.0 568.0 539.0 1245.0 808.0 749.0 1103.0 5099.0 0 0 0 0 g 0 0 0 0 1792.0 56544.0 582.0 1703.0 1377.0 1429.0 50062.0 38289.0 0 0 0 0 t 0 0 0 0 7659.0 480.0 770.0 54420.0 1650.0 1586.0 3150.0 3977.0 0 0 0 0
MA0037.5_rc_shift4 (Gata3_rc)				; oligos_7nt_mkv1_m2 versus MA0037.5_rc (Gata3_rc); m=6/8; ncol2=8; w=0; offset=1; strand=R; shift=4; score=0.453128; ----AGATAAGa---- ; cor=; Ncor= a 0 0 0 0 20257.0 480.0 23868.0 800.0 22166.0 22866.0 2055.0 16442.0 0 0 0 0 c 0 0 0 0 608.0 255.0 291.0 528.0 960.0 280.0 2165.0 2551.0 0 0 0 0 g 0 0 0 0 903.0 23839.0 282.0 566.0 758.0 928.0 19702.0 3859.0 0 0 0 0 t 0 0 0 0 3100.0 294.0 427.0 22974.0 984.0 794.0 946.0 2016.0 0 0 0 0
MA0124.3_rc_shift7 (Nkx3-1_rc)				; oligos_7nt_mkv1_m2 versus MA0124.3_rc (Nkx3-1_rc); m=7/8; ncol2=7; w=0; offset=4; strand=R; shift=7; score=0.416169; -------TAAGTGg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 523.0 5335.0 5335.0 9.0 88.0 336.0 275.0 0 0 c 0 0 0 0 0 0 0 173.0 0.0 0.0 9.0 10.0 10.0 1776.0 0 0 g 0 0 0 0 0 0 0 273.0 254.0 1.0 5335.0 28.0 5335.0 5335.0 0 0 t 0 0 0 0 0 0 0 5335.0 0.0 0.0 59.0 5335.0 0.0 981.0 0 0
MA2097.1_rc_shift0 (ZNF75A_rc)				; oligos_7nt_mkv1_m2 versus MA2097.1_rc (ZNF75A_rc); m=8/8; ncol2=12; w=-3; offset=-3; strand=R; shift=0; score=0.402049; tGTGGGAAAAgC---- ; cor=; Ncor= a 174.0 0.0 7.0 0.0 44.0 19.0 1331.0 1331.0 1331.0 1331.0 61.0 259.0 0 0 0 0 c 253.0 0.0 7.0 0.0 7.0 0.0 0.0 149.0 0.0 27.0 426.0 1331.0 0 0 0 0 g 333.0 1331.0 9.0 1331.0 1331.0 1331.0 1.0 174.0 1.0 122.0 1331.0 147.0 0 0 0 0 t 998.0 4.0 1331.0 1.0 165.0 0.0 2.0 109.0 0.0 57.0 498.0 133.0 0 0 0 0