; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	0	1	2	0	2	0	0	0	2	2	1	1
c	1	0	0	0	0	0	0	2	0	0	1	0
g	1	1	0	2	0	2	0	0	0	0	0	0
t	0	0	0	0	0	0	2	0	0	0	0	1
//
; Sites	2
>site_0
CAAGAGTCAAAT
>site_1
GGAGAGTCAACA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m1_rc.png
;
a	0	0	0	1	0	1	1	0	0	0	0	0	0
c	0	0	0	0	0	0	0	0	1	0	0	0	0
g	1	0	1	0	0	0	0	1	0	1	1	1	1
t	0	1	0	0	1	0	0	0	0	0	0	0	0
//
; Sites	1
>site_0
GTGATAAGCGGGG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m2_rc.png
;
a	1	1	0	0	0	0	0	0	0	0	3
c	1	1	5	5	5	1	0	5	4	3	0
g	1	1	0	0	0	0	5	0	0	0	0
t	2	2	0	0	0	4	0	0	1	2	2
//
; Sites	5
>site_0
GTCCCTGCCTA
>site_1
TACCCCGCTTA
>site_2
ACCCCTGCCCT
>site_3
TGCCCTGCCCA
>site_4
CTCCCTGCCCT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m3_rc.png
;
a	0	0	0	0	0	1	0	1	1	0	1	0	1	1	0
c	0	1	0	1	1	0	0	0	0	1	0	1	0	0	0
g	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
t	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0
//
; Sites	1
>site_0
TCTCCATAACACAAG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m4_rc.png
;
a	1	0	0	0	0	0	0	0	1	0	0
c	0	0	1	0	0	0	0	0	0	0	0
g	0	1	0	1	1	1	1	0	0	1	1
t	0	0	0	0	0	0	0	1	0	0	0
//
; Sites	1
>site_0
AGCGGGGTAGG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/02/26/peak-motifs.2026-02-26.234316_2026-02-26.234316_5Dj251/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m5_rc.png
;
; Host name	rsat
; Job started	2026-02-26.234326
; Job done	2026-02-26.234328
; Seconds	0.13
;	user	0.14
;	system	0.04
;	cuser	1.11
;	csystem	0.21
