; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2026/03/04/oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/03/04/oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/03/04/oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2026/03/04/oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2026/03/04/oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 918 910 1088 690 1120 535 471 503 1225 349 312 318 291 325 436 1436 825 1569 1724 1825 1063 2008 2103 2158 2131 2153 2002 992 1680 1123 1167 1155
c 269 285 244 221 180 154 161 152 152 93 78 77 107 105 151 144 145 182 134 103 110 102 107 83 87 77 107 130 140 182 251 255
g 279 257 247 180 184 144 135 120 127 103 72 65 66 97 108 126 147 171 174 151 156 133 122 84 83 89 119 151 196 275 307 284
t 1147 1161 1034 1522 1129 1780 1846 1838 1109 2068 2151 2153 2149 2086 1918 907 1496 691 581 534 1284 370 281 288 312 294 385 1340 597 1033 888 919
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m1_rc.png
;
a 420 405 525 373 538 340 579 580 368 584 595 243 270 258 285 613 660 334 339 728 801 830 807 815 792 394 751 739 711 662 309 291 595 201 188 180 191 171 224 557 295 246 535 329 589 548 599 364 596 410 441 442
c 118 112 86 85 88 82 82 92 69 70 63 52 52 55 64 68 62 76 44 53 39 37 50 44 46 47 50 52 62 64 65 63 57 49 42 34 40 49 50 62 60 73 77 80 74 66 73 78 71 102 106 100
g 104 122 57 95 86 69 64 56 66 60 73 62 42 54 82 63 45 70 60 52 42 38 32 36 39 41 51 52 71 56 77 52 63 41 44 37 46 31 41 41 73 62 72 67 60 82 70 77 91 95 112 117
t 418 421 392 507 348 569 335 332 557 346 329 703 696 693 629 316 293 580 617 227 178 155 171 165 183 578 208 217 216 278 609 654 345 769 786 809 783 809 745 400 632 679 376 584 337 364 318 541 302 453 401 401
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m2_rc.png
;
a 4371 4410 4563 4934 7336 7857 8060 8060 7810 5109 7922 8200 8341 8216 8101 7684 4914 4627 5392 4788 4547
c 1160 1174 1027 1437 456 262 185 199 231 295 174 138 118 122 178 248 659 770 791 925 976
g 867 870 785 768 345 255 243 251 312 494 342 266 187 230 261 404 1904 920 985 1115 1148
t 2569 2513 2592 1828 830 593 479 457 614 3069 529 363 321 399 427 631 1490 2650 1799 2139 2296
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m3_rc.png
;
a 1042 950 1163 749 1185 712 702 678 1300 1262 577 507 482 480 1228 408 408 337 373 407 601 1719 1980 1997 2057 2010 1986 1100 1874 1872 1862 1766 1030 944 1581 1508 1487 1020 1442 991 1118 1004
c 308 273 233 228 218 223 238 201 188 183 151 135 145 154 159 129 125 132 133 132 169 131 101 117 94 77 97 133 112 121 116 126 145 188 160 172 198 197 201 233 279 266
g 266 279 233 201 197 198 172 160 188 145 126 116 121 112 133 97 77 94 117 101 131 169 132 133 132 125 129 159 154 145 135 151 183 188 201 238 223 218 228 233 273 308
t 1004 1118 991 1442 1020 1487 1508 1581 944 1030 1766 1862 1872 1874 1100 1986 2010 2057 1997 1980 1719 601 407 373 337 408 408 1228 480 482 507 577 1262 1300 678 702 712 1185 749 1163 950 1042
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m4_rc.png
;
a 3107 3126 3439 3021 2754 5322 5735 5915 5948 5871 5605 3583 5554 5733 5663 5475 3276 3118 5151 5330 5317 5115 3402 3242 3209
c 819 809 761 749 488 317 187 155 117 118 182 279 166 160 164 217 338 390 330 294 281 340 848 722 756
g 614 689 600 967 383 263 192 143 141 180 251 388 254 190 194 255 489 490 346 291 287 379 779 794 813
t 2091 2007 1831 1894 3006 729 517 418 425 462 593 2381 657 548 610 684 2528 2633 804 716 746 797 1602 1873 1853
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m5_rc.png
;
a 503 477 608 460 666 403 713 676 421 658 714 383 412 590 395 353 665 409 743 649 689 369 458 743 840 822 867 409 861 858 928 851 929 804 368 250 315 243 670 209 205 176 212 205 256 669 661 326 336 314 616 370 648 433 483 456
c 135 126 113 109 101 86 85 85 93 97 77 74 73 80 85 83 85 80 96 81 67 57 54 74 58 57 63 59 58 63 58 53 45 60 80 86 66 64 67 58 45 38 41 50 66 82 79 78 86 96 87 78 100 103 113 126
g 115 101 105 84 91 69 77 89 90 83 82 87 78 91 86 86 79 84 72 78 80 78 77 73 53 59 50 55 46 37 58 54 53 54 73 74 61 66 61 57 46 61 61 41 70 52 83 71 69 85 91 102 89 108 130 128
t 466 515 393 566 361 661 344 369 615 381 346 675 656 458 653 697 390 646 308 411 383 715 630 329 268 281 239 696 254 261 175 261 192 301 698 809 777 846 421 895 923 944 905 923 827 416 396 744 728 724 425 669 382 575 493 509
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m6_rc.png
;
a 4727 4918 5358 7642 8150 8222 8301 8292 7976 5232 7981 8213 8204 8036 7613 4767 4871 5008 4742 4531
c 1132 1028 913 382 196 150 127 117 208 295 209 170 141 181 280 680 868 897 938 999
g 865 833 969 335 235 219 202 219 312 569 306 258 254 273 427 1929 1006 1085 1107 1152
t 2270 2215 1754 635 413 403 364 366 498 2898 498 353 395 504 674 1618 2249 2004 2207 2312
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m7_rc.png
;
a 4673 4712 4819 5057 7927 8421 8662 8680 8364 5486 8547 8811 8932 8848 8735 8199 5596 5349 5296
c 1282 1312 1218 1982 526 318 238 233 289 361 222 174 156 157 203 352 1316 1024 1016
g 947 934 839 776 317 256 234 245 322 507 308 259 207 221 266 429 977 1085 1154
t 2751 2695 2777 1838 883 658 519 495 678 3299 576 409 358 427 449 673 1764 2195 2187
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m8_rc.png
;
a 4652 4693 4752 5148 7817 8300 8607 8625 8350 5499 8491 8770 8907 8830 8738 8257 5463 6140 5962 5321 4998
c 1277 1291 1134 1672 528 364 254 245 275 351 188 177 147 135 165 284 695 788 841 972 1036
g 946 954 829 863 383 289 244 277 354 546 397 290 224 284 300 423 2017 947 1042 1173 1219
t 2782 2719 2942 1974 929 704 552 510 678 3261 581 420 379 408 454 693 1482 1782 1812 2191 2404
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m9_rc.png
;
a 885 906 987 695 1173 556 559 1203 369 327 304 307 296 438 1290 610 647 1669 1896 1942 1972 1928 1893 1027 1774 1772 1737 1727 936 841 1425 1357 1070 1085
c 250 293 244 215 188 183 152 127 104 94 98 90 115 151 152 139 149 129 95 97 75 68 87 112 103 97 107 105 147 169 174 202 225 267
g 228 242 206 166 172 139 120 108 78 77 84 101 80 105 134 141 121 143 89 85 94 96 84 138 120 136 112 124 166 185 183 182 272 266
t 1030 952 956 1317 860 1515 1562 955 1842 1895 1907 1895 1902 1699 817 1503 1476 452 313 269 252 301 329 1116 396 388 437 437 1144 1198 611 652 826 775
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m10_rc.png
;
a 192 134 572 46 28 9 13 19 59 261 183
c 129 185 10 480 15 15 3 18 478 111 114
g 92 134 15 35 534 13 572 515 28 97 139
t 194 154 10 46 30 570 19 55 42 138 171
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m11_rc.png
;
a 3127 3126 3137 2826 5359 5786 5968 6001 5919 5640 3583 5649 5850 5779 5613 3272 3104 5294 5464 5432 5252 3470 3291 3296
c 854 880 989 552 338 185 161 133 133 209 289 177 162 151 218 353 398 330 291 278 342 863 743 766
g 684 669 602 364 256 202 154 144 178 262 393 248 184 194 248 480 479 320 289 291 361 774 801 802
t 2073 2063 2010 2996 785 565 455 460 508 627 2473 664 542 614 659 2633 2757 794 694 737 783 1631 1903 1874
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m12_rc.png
;
a 50 46 0 0 0 0 151 151 56 67
c 26 41 151 0 0 0 0 0 22 21
g 20 18 0 151 0 0 0 0 26 13
t 55 46 0 0 151 151 0 0 47 50
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m13_rc.png
;
a 68 55 215 0 215 0 0 0 53 52
c 44 53 0 215 0 215 0 0 32 29
g 35 56 0 0 0 0 215 0 85 50
t 68 51 0 0 0 0 0 215 45 84
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m14_rc.png
;
a 38 28 132 0 0 0 0 132 29 35
c 52 69 0 132 0 0 132 0 29 45
g 11 16 0 0 132 0 0 0 29 18
t 31 19 0 0 0 132 0 0 45 34
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m15_rc.png
;
a 16 18 0 78 0 0 0 0 6 15
c 22 17 78 0 78 0 78 0 35 17
g 13 14 0 0 0 78 0 78 15 16
t 27 29 0 0 0 0 0 0 22 30
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.121100_t2emfV_pssm_count_matrices_logo_m16_rc.png
;
; Host name rsat
; Job started 2026-03-04.121123
; Job done 2026-03-04.121134
; Seconds 1.44
; user 1.44
; system 0.35
; cuser 8.24
; csystem 0.88