; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2026/03/04/oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/03/04/oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/03/04/oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2026/03/04/oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2026/03/04/oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 145 157 185 197 76 87 267 305 299 300 298 264 50 61 37 40 66 261 265 123 122 145 138
c 34 27 22 24 17 14 19 22 19 15 16 14 17 10 9 10 16 15 20 33 34 35 34
g 42 35 32 38 15 9 16 7 11 10 8 14 18 18 19 24 18 18 12 26 26 33 42
t 142 144 124 104 255 253 61 29 34 38 41 71 278 274 298 289 263 69 66 181 181 150 149
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m1_rc.png
;
a 135 132 150 179 86 102 248 266 272 277 264 267 245 238 61 55 55 54 63 235 240 133 106 124 119
c 38 38 22 22 13 13 8 8 14 10 14 10 11 11 13 14 11 14 13 11 13 29 32 25 30
g 24 32 27 20 21 13 18 11 8 6 6 5 12 12 15 20 19 13 12 14 16 21 22 30 33
t 123 118 121 99 200 192 46 35 26 27 36 38 52 59 231 231 235 239 232 60 51 137 160 141 138
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m2_rc.png
;
a 155 145 181 210 125 115 247 256 251 124 279 293 283 284 280 271 69 60 52 52 63 252 266 122 120 127 143
c 40 37 38 20 19 17 18 10 12 10 9 14 21 15 15 14 18 8 15 16 21 18 18 40 37 43 35
g 33 35 24 24 25 17 20 21 16 14 16 11 11 11 11 17 19 24 19 22 18 16 20 19 27 28 37
t 123 134 108 97 182 202 66 64 72 203 47 33 36 41 45 49 245 259 265 261 249 65 47 170 167 153 136
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m3_rc.png
;
a 14 21 12 7 65 5 1 5 67 62 7 26 27
c 17 11 29 59 1 58 68 0 1 3 52 15 11
g 13 6 13 0 1 4 0 0 0 4 1 10 10
t 25 31 15 3 2 2 0 64 1 0 9 18 21
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m4_rc.png
;
a 22 26 12 40 7 3 64 3 5 0 4 51 10 40 18 19
c 15 8 11 4 4 54 1 57 1 1 5 4 12 3 14 10
g 10 14 3 12 4 5 1 1 57 1 54 4 4 11 8 15
t 19 18 40 10 51 4 0 5 3 64 3 7 40 12 26 22
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m5_rc.png
;
a 367 354 479 497 141 139 701 779 757 761 743 202 502 232 346 345
c 76 93 53 66 30 25 30 12 25 18 17 33 44 58 81 75
g 84 107 67 55 40 35 39 9 7 9 20 30 67 61 122 106
t 307 280 235 216 623 635 64 34 45 46 54 569 221 483 285 308
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m6_rc.png
;
a 371 359 461 473 144 131 678 742 743 749 704 166 184 224 499 502 273 301 323 315
c 74 83 65 53 35 33 34 21 15 20 21 35 41 54 54 61 57 71 104 93
g 89 100 67 78 29 44 36 18 18 10 21 29 63 78 88 55 80 75 88 98
t 301 293 242 231 627 627 87 54 59 56 89 605 547 479 194 217 425 388 320 329
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m7_rc.png
;
a 256 250 284 321 106 90 397 444 450 456 443 108 67 83 116 388 392 157 179 201 189
c 50 46 51 29 19 20 31 25 21 19 15 37 17 18 22 24 32 38 55 63 73
g 56 61 44 39 25 22 32 17 20 13 14 19 24 23 42 27 34 38 39 59 57
t 179 184 162 152 391 409 81 55 50 53 69 377 433 417 361 102 83 308 268 218 222
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m8_rc.png
;
a 331 298 276 601 576 108 654 658 667 114 658 419 347 295
c 66 91 73 32 29 9 20 5 12 16 14 52 70 76
g 74 64 68 30 27 10 19 9 11 14 15 71 66 77
t 257 275 311 65 96 601 35 56 38 584 41 186 245 280
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m9_rc.png
;
a 136 144 302 334 321 323 56 17 7 15 110 135
c 43 46 8 4 5 2 27 5 8 10 52 34
g 41 49 14 1 5 8 211 3 11 13 70 57
t 124 105 20 5 13 11 50 319 318 306 112 118
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m10_rc.png
;
a 14 16 41 0 41 0 0 0 11 12
c 8 9 0 41 0 0 0 0 11 8
g 12 10 0 0 0 41 0 41 6 11
t 7 6 0 0 0 0 41 0 13 10
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m11_rc.png
;
a 154 176 148 241 105 312 332 320 326 325 306 62 65 41 52 64 282 293 134 129 143 150
c 34 34 25 23 14 21 22 27 13 11 18 17 10 15 13 19 13 19 47 36 41 33
g 40 46 33 25 13 16 11 14 9 15 16 19 17 25 20 16 18 18 23 25 37 41
t 168 140 190 107 264 47 31 35 48 45 56 298 304 315 311 297 83 66 192 206 175 172
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m12_rc.png
;
a 88 101 225 225 0 0 225 0 62 86
c 32 35 0 0 0 0 0 0 28 22
g 34 22 0 0 0 0 0 0 43 31
t 71 67 0 0 225 225 0 225 92 86
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m13_rc.png
;
a 155 163 184 231 132 143 236 273 312 90 70 53 47 57 79 321 356 370 371 373 338 115 140 186 181
c 42 43 35 34 35 42 49 29 19 20 9 14 17 17 27 27 18 16 22 15 17 18 16 38 35
g 52 48 34 27 32 31 23 20 19 17 8 17 16 21 30 28 12 16 13 16 16 21 34 62 55
t 205 200 201 162 255 238 146 132 104 327 367 370 374 359 318 78 68 52 48 50 83 300 264 168 183
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m14_rc.png
;
a 29 32 28 62 4 3 84 1 8 1 2 27 23 28
c 13 9 13 3 8 73 0 80 1 0 5 12 24 10
g 19 22 7 14 5 4 1 0 71 0 73 29 17 18
t 24 22 37 6 68 5 0 4 5 84 5 17 21 29
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/04//oligo-analysis_2026-03-04.123223_F5XVAZ_pssm_count_matrices_logo_m15_rc.png
;
; Host name rsat
; Job started 2026-03-04.123239
; Job done 2026-03-04.123244
; Seconds 0.36
; user 0.36
; system 0.16
; cuser 4.29
; csystem 0.75