| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv3_m3_shift0 (oligos_6nt_mkv3_m3) |
 |
  |
  |
; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=21; shift=0; ncol=21; yhcaTTTGCATaAcAAwgsmm
; Alignment reference
a 141 209 180 501 47 82 96 99 42 766 25 519 544 55 658 688 459 195 178 270 218
c 223 205 311 89 38 104 22 40 726 12 29 59 32 501 49 31 39 58 219 216 233
g 189 146 126 96 24 45 8 633 9 5 13 123 28 148 24 43 42 485 306 181 169
t 237 230 173 104 681 559 664 18 13 7 723 89 186 86 59 28 250 52 87 123 170
|
| MA1962.1_shift2 (POU2F1::SOX2) |
 |
|
|
; oligos_6nt_mkv3_m3 versus MA1962.1 (POU2F1::SOX2); m=1/11; ncol2=17; w=0; offset=2; strand=D; shift=2; score=0.754789; --mATTWrCATmACAAWrg--
; cor=; Ncor=
a 0 0 7886.0 15701.0 553.0 1136.0 5710.0 5841.0 1656.0 15595.0 32.0 7899.0 16152.0 376.0 16231.0 16210.0 5996.0 7139.0 2147.0 0 0
c 0 0 4993.0 528.0 216.0 552.0 471.0 812.0 15582.0 113.0 154.0 5483.0 518.0 15839.0 175.0 133.0 340.0 636.0 3768.0 0 0
g 0 0 2541.0 434.0 22.0 53.0 65.0 10408.0 70.0 501.0 49.0 2557.0 158.0 683.0 89.0 61.0 87.0 7984.0 8916.0 0 0
t 0 0 825.0 1325.0 16133.0 16109.0 14381.0 25.0 141.0 35.0 16010.0 306.0 629.0 2079.0 372.0 127.0 13866.0 1558.0 1414.0 0 0
|
| MA0142.1_rc_shift3 (Pou5f1::Sox2_rc) |
 |
|
|
; oligos_6nt_mkv3_m3 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=2/11; ncol2=15; w=0; offset=3; strand=R; shift=3; score=0.705446; ---aTtTGCATrwsAAwr---
; cor=; Ncor=
a 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 0
c 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 0
g 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 0
t 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0 0
|
| MA0507.3_rc_shift0 (POU2F2_rc) |
 |
|
|
; oligos_6nt_mkv3_m3 versus MA0507.3_rc (POU2F2_rc); m=3/11; ncol2=13; w=0; offset=0; strand=R; shift=0; score=0.566316; cTmATTTGCATAw--------
; cor=; Ncor=
a 788.0 1065.0 5505.0 9207.0 8.0 57.0 1929.0 1193.0 111.0 9207.0 0.0 9207.0 3315.0 0 0 0 0 0 0 0 0
c 5392.0 851.0 3703.0 35.0 0.0 23.0 0.0 127.0 9207.0 2.0 0.0 4.0 2020.0 0 0 0 0 0 0 0 0
g 1301.0 648.0 862.0 8.0 5.0 7.0 0.0 8014.0 0.0 13.0 0.0 100.0 435.0 0 0 0 0 0 0 0 0
t 1726.0 6644.0 1399.0 56.0 9207.0 9207.0 7279.0 2.0 0.0 0.0 9207.0 34.0 5892.0 0 0 0 0 0 0 0 0
|
| MA0784.3_shift0 (POU1F1) |
 |
|
|
; oligos_6nt_mkv3_m3 versus MA0784.3 (POU1F1); m=4/11; ncol2=14; w=0; offset=0; strand=D; shift=0; score=0.56559; CTmATTwGCATAwt-------
; cor=; Ncor=
a 131.0 106.0 2281.0 4127.0 0.0 91.0 1564.0 419.0 54.0 4127.0 3.0 4127.0 2323.0 849.0 0 0 0 0 0 0 0
c 3623.0 126.0 1846.0 7.0 0.0 13.0 0.0 67.0 4127.0 9.0 3.0 5.0 165.0 702.0 0 0 0 0 0 0 0
g 372.0 220.0 192.0 28.0 1.0 2.0 0.0 3708.0 1.0 5.0 0.0 5.0 57.0 384.0 0 0 0 0 0 0 0
t 504.0 3907.0 262.0 31.0 4127.0 4127.0 2563.0 16.0 3.0 17.0 4127.0 59.0 1804.0 3278.0 0 0 0 0 0 0 0
|
| MA0788.1_rc_shift1 (POU3F3_rc) |
 |
|
|
; oligos_6nt_mkv3_m3 versus MA0788.1_rc (POU3F3_rc); m=5/11; ncol2=13; w=0; offset=1; strand=R; shift=1; score=0.530106; -waATTwGCATAww-------
; cor=; Ncor=
a 0 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 0 0 0 0 0 0 0
c 0 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 0 0 0 0 0 0 0
g 0 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 0 0 0 0 0 0 0
t 0 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0 0 0 0 0 0 0 0
|
| MA0787.1_rc_shift1 (POU3F2_rc) |
 |
|
|
; oligos_6nt_mkv3_m3 versus MA0787.1_rc (POU3F2_rc); m=6/11; ncol2=12; w=0; offset=1; strand=R; shift=1; score=0.527342; -tmATTwGCATAw--------
; cor=; Ncor=
a 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 0 0 0 0 0 0 0
c 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 0 0 0 0 0 0 0
g 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 0 0 0 0 0 0 0
t 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0 0 0 0 0 0 0 0
|
| MA0786.2_rc_shift3 (POU3F1_rc) |
 |
|
|
; oligos_6nt_mkv3_m3 versus MA0786.2_rc (POU3F1_rc); m=7/11; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.453924; ---ATTwrCATAw--------
; cor=; Ncor=
a 0 0 0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 0 0
c 0 0 0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 0 0
g 0 0 0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 0 0
t 0 0 0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0 0 0
|
| MA0627.3_rc_shift3 (POU2F3_rc) |
 |
|
|
; oligos_6nt_mkv3_m3 versus MA0627.3_rc (POU2F3_rc); m=8/11; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.424627; ---ATTTGCATa---------
; cor=; Ncor=
a 0 0 0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 0 0 0 0 0 0 0 0 0
c 0 0 0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 0 0 0 0 0 0 0 0 0
g 0 0 0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 0 0 0 0 0 0 0 0 0
t 0 0 0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 0 0 0 0 0 0 0 0 0
|
| MA0785.2_rc_shift3 (POU2F1_rc) |
 |
|
|
; oligos_6nt_mkv3_m3 versus MA0785.2_rc (POU2F1_rc); m=9/11; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.416793; ---ATTwgCATA---------
; cor=; Ncor=
a 0 0 0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 0 0 0 0 0 0 0 0 0
c 0 0 0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 0 0 0 0 0 0 0 0 0
g 0 0 0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 0 0 0 0 0 0 0 0 0
t 0 0 0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 0 0 0 0 0 0 0 0 0
|
| MA0792.1_rc_shift3 (POU5F1B_rc) |
 |
|
|
; oligos_6nt_mkv3_m3 versus MA0792.1_rc (POU5F1B_rc); m=10/11; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.416653; ---ATTwrCATA---------
; cor=; Ncor=
a 0 0 0 9519.0 203.0 896.0 3220.0 3828.0 1790.0 9519.0 84.0 9519.0 0 0 0 0 0 0 0 0 0
c 0 0 0 750.0 97.0 856.0 65.0 1293.0 9519.0 206.0 67.0 808.0 0 0 0 0 0 0 0 0 0
g 0 0 0 537.0 65.0 144.0 51.0 9519.0 94.0 364.0 21.0 1778.0 0 0 0 0 0 0 0 0 0
t 0 0 0 1559.0 9519.0 9519.0 6299.0 398.0 322.0 171.0 9519.0 1326.0 0 0 0 0 0 0 0 0 0
|
| MA0789.1_rc_shift3 (POU3F4_rc) |
 |
|
|
; oligos_6nt_mkv3_m3 versus MA0789.1_rc (POU3F4_rc); m=11/11; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.412927; ---ATTwGCATA---------
; cor=; Ncor=
a 0 0 0 11117.0 168.0 885.0 4670.0 2565.0 245.0 11117.0 26.0 11117.0 0 0 0 0 0 0 0 0 0
c 0 0 0 292.0 88.0 315.0 56.0 602.0 11117.0 24.0 68.0 136.0 0 0 0 0 0 0 0 0 0
g 0 0 0 247.0 47.0 332.0 10.0 11117.0 19.0 59.0 23.0 349.0 0 0 0 0 0 0 0 0 0
t 0 0 0 705.0 11117.0 11117.0 6447.0 136.0 53.0 59.0 11117.0 941.0 0 0 0 0 0 0 0 0 0
|