/var/www/html/rsat/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4.tf
 Output files
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4.tf
		file1	1	11	1196
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m4 MA0786.2 oligos_6nt_mkv3_m4 POU3F1 0.826 0.751 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_6nt_mkv3_m4 MA0843.2 oligos_6nt_mkv3_m4 TEF 0.789 0.717 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv3_m4 MA0025.3 oligos_6nt_mkv3_m4 NFIL3 0.871 0.713 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_6nt_mkv3_m4 MA0639.2 oligos_6nt_mkv3_m4 DBP 0.765 0.696 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_6nt_mkv3_m4 MA0792.1 oligos_6nt_mkv3_m4 POU5F1B 0.835 0.683 11 9 9 11 0.8182 0.8182 1.0000 R 0
oligos_6nt_mkv3_m4 MA0043.4 oligos_6nt_mkv3_m4 HLF 0.835 0.683 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_6nt_mkv3_m4 MA0785.2 oligos_6nt_mkv3_m4 POU2F1 0.831 0.680 11 9 9 11 0.8182 0.8182 1.0000 R 0
oligos_6nt_mkv3_m4 MA0627.3 oligos_6nt_mkv3_m4 POU2F3 0.819 0.670 11 9 9 11 0.8182 0.8182 1.0000 R 0
oligos_6nt_mkv3_m4 MA0789.1 oligos_6nt_mkv3_m4 POU3F4 0.811 0.663 11 9 9 11 0.8182 0.8182 1.0000 R 0
oligos_6nt_mkv3_m4 MA0788.1 oligos_6nt_mkv3_m4 POU3F3 0.771 0.652 11 13 11 13 0.8462 1.0000 0.8462 R -2
oligos_6nt_mkv3_m4 MA1607.2 oligos_6nt_mkv3_m4 Foxl2 0.832 0.624 11 10 9 12 0.7500 0.8182 0.9000 R -1
oligos_6nt_mkv3_m4 MA0787.1 oligos_6nt_mkv3_m4 POU3F2 0.803 0.618 11 12 10 13 0.7692 0.9091 0.8333 R -2
oligos_6nt_mkv3_m4 MA0784.3 oligos_6nt_mkv3_m4 POU1F1 0.781 0.614 11 14 11 14 0.7857 1.0000 0.7857 D -3
oligos_6nt_mkv3_m4 MA0845.1 oligos_6nt_mkv3_m4 FOXB1 0.871 0.603 11 11 9 13 0.6923 0.8182 0.8182 R -2
oligos_6nt_mkv3_m4 MA0507.3 oligos_6nt_mkv3_m4 POU2F2 0.826 0.590 11 13 10 14 0.7143 0.9091 0.7692 R -3
oligos_6nt_mkv3_m4 MA0032.2 oligos_6nt_mkv3_m4 FOXC1 0.827 0.573 11 11 9 13 0.6923 0.8182 0.8182 R -2
oligos_6nt_mkv3_m4 MA0142.1 oligos_6nt_mkv3_m4 Pou5f1::Sox2 0.768 0.563 11 15 11 15 0.7333 1.0000 0.7333 R 0
oligos_6nt_mkv3_m4 MA1115.2 oligos_6nt_mkv3_m4 POU5F1 0.843 0.536 11 7 7 11 0.6364 0.6364 1.0000 R 1
oligos_6nt_mkv3_m4 MA0846.2 oligos_6nt_mkv3_m4 FOXC2 0.765 0.529 11 11 9 13 0.6923 0.8182 0.8182 R -2
oligos_6nt_mkv3_m4 MA0606.3 oligos_6nt_mkv3_m4 Nfat5 0.709 0.516 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_6nt_mkv3_m4 MA2118.1 oligos_6nt_mkv3_m4 FOXS1 0.847 0.494 11 8 7 12 0.5833 0.6364 0.8750 R -1
oligos_6nt_mkv3_m4 MA1962.1 oligos_6nt_mkv3_m4 POU2F1::SOX2 0.755 0.489 11 17 11 17 0.6471 1.0000 0.6471 D -1
oligos_6nt_mkv3_m4 MA0047.4 oligos_6nt_mkv3_m4 FOXA2 0.828 0.483 11 8 7 12 0.5833 0.6364 0.8750 R -1
oligos_6nt_mkv3_m4 MA0042.2 oligos_6nt_mkv3_m4 FOXI1 0.872 0.436 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA1683.2 oligos_6nt_mkv3_m4 FOXA3 0.870 0.435 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA0031.2 oligos_6nt_mkv3_m4 FOXD1 0.868 0.434 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA0019.2 oligos_6nt_mkv3_m4 Ddit3::Cebpa 0.704 0.433 11 10 8 13 0.6154 0.7273 0.8000 R -2
oligos_6nt_mkv3_m4 MA0481.4 oligos_6nt_mkv3_m4 FOXP1 0.865 0.432 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA2117.1 oligos_6nt_mkv3_m4 FOXP4 0.855 0.427 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA0850.1 oligos_6nt_mkv3_m4 FOXP3 0.854 0.427 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA1103.3 oligos_6nt_mkv3_m4 FOXK2 0.851 0.425 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA0157.4 oligos_6nt_mkv3_m4 Foxo3 0.848 0.424 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA0852.3 oligos_6nt_mkv3_m4 FOXK1 0.847 0.424 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA0480.3 oligos_6nt_mkv3_m4 Foxo1 0.838 0.419 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA0848.1 oligos_6nt_mkv3_m4 FOXO4 0.834 0.417 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA0849.1 oligos_6nt_mkv3_m4 FOXO6 0.828 0.414 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA0033.2 oligos_6nt_mkv3_m4 FOXL1 0.817 0.408 11 7 6 12 0.5000 0.5455 0.8571 R -1
oligos_6nt_mkv3_m4 MA0624.3 oligos_6nt_mkv3_m4 Nfatc1 0.745 0.407 11 6 6 11 0.5455 0.5455 1.0000 R 1
oligos_6nt_mkv3_m4 MA0593.2 oligos_6nt_mkv3_m4 FOXP2 0.751 0.404 11 9 7 13 0.5385 0.6364 0.7778 R -2
oligos_6nt_mkv3_m4 MA0041.3 oligos_6nt_mkv3_m4 FOXD3 0.717 0.403 11 14 9 16 0.5625 0.8182 0.6429 R -5
oligos_6nt_mkv3_m4 MA1478.2 oligos_6nt_mkv3_m4 DMRTA2 0.739 0.403 11 6 6 11 0.5455 0.5455 1.0000 D 1
oligos_6nt_mkv3_m4 MA1606.2 oligos_6nt_mkv3_m4 Foxf1 0.803 0.401 11 7 6 12 0.5000 0.5455 0.8571 R -1 
 Host name	rsat
 Job started	2026-03-04.110010
 Job done	2026-03-04.110038
 Seconds	5.54
	user	5.55
	system	1.64
	cuser	18.8
;	csystem	2.04