One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m4/peak-motifs_oligos_6nt_mkv3_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m4_shift5 ; 43 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m4_shift5 (oligos_6nt_mkv3_m4)
; oligos_6nt_mkv3_m4; m=0 (reference); ncol1=11; shift=5; ncol=16; -----atTTACATAws ; Alignment reference a 0 0 0 0 0 460 228 61 32 921 63 1109 80 1031 380 286 c 0 0 0 0 0 212 227 61 41 41 1038 34 77 47 227 324 g 0 0 0 0 0 267 182 29 23 187 29 15 56 43 199 301 t 0 0 0 0 0 257 559 1045 1100 47 66 38 983 75 390 285

MA0786.2_rc_shift5 (POU3F1_rc)
; oligos_6nt_mkv3_m4 versus MA0786.2_rc (POU3F1_rc); m=1/42; ncol2=10; w=0; offset=0; strand=R; shift=5; score=0.750678; -----ATTwrCATAw- ; cor=; Ncor= a 0 0 0 0 0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 c 0 0 0 0 0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 g 0 0 0 0 0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 t 0 0 0 0 0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0

MA0843.2_shift6 (TEF)
; oligos_6nt_mkv3_m4 versus MA0843.2 (TEF); m=2/42; ncol2=10; w=0; offset=1; strand=D; shift=6; score=0.717234; ------rTTACrTAAy ; cor=; Ncor= a 0 0 0 0 0 0 1971.0 90.0 107.0 3601.0 17.0 1324.0 0.0 3601.0 3601.0 0.0 c 0 0 0 0 0 0 372.0 18.0 0.0 0.0 3601.0 0.0 133.0 76.0 0.0 2120.0 g 0 0 0 0 0 0 1630.0 5.0 31.0 108.0 0.0 2277.0 43.0 11.0 19.0 269.0 t 0 0 0 0 0 0 8.0 3601.0 3601.0 0.0 446.0 0.0 3601.0 161.0 10.0 1481.0

MA0025.3_rc_shift6 (NFIL3_rc)
; oligos_6nt_mkv3_m4 versus MA0025.3_rc (NFIL3_rc); m=3/42; ncol2=9; w=0; offset=1; strand=R; shift=6; score=0.713015; ------aTTrCATAA- ; cor=; Ncor= a 0 0 0 0 0 0 13143.0 474.0 434.0 9180.0 610.0 20334.0 433.0 20606.0 20927.0 0 c 0 0 0 0 0 0 2701.0 360.0 171.0 454.0 20459.0 492.0 990.0 1714.0 518.0 0 g 0 0 0 0 0 0 4959.0 251.0 543.0 12004.0 467.0 1511.0 220.0 208.0 681.0 0 t 0 0 0 0 0 0 2193.0 21911.0 21848.0 1358.0 1460.0 659.0 21353.0 468.0 870.0 0

MA0639.2_shift6 (DBP)
; oligos_6nt_mkv3_m4 versus MA0639.2 (DBP); m=4/42; ncol2=10; w=0; offset=1; strand=D; shift=6; score=0.695648; ------rTTAYRTAAy ; cor=; Ncor= a 0 0 0 0 0 0 3706.0 5.0 4.0 7100.0 2.0 3180.0 3.0 7100.0 7100.0 158.0 c 0 0 0 0 0 0 1130.0 4.0 6.0 0.0 7100.0 17.0 541.0 288.0 1.0 3707.0 g 0 0 0 0 0 0 3393.0 2.0 602.0 498.0 21.0 7100.0 7.0 7.0 2.0 1543.0 t 0 0 0 0 0 0 93.0 7100.0 7100.0 4.0 2664.0 1.0 7100.0 6.0 2.0 3393.0

MA0792.1_rc_shift5 (POU5F1B_rc)
; oligos_6nt_mkv3_m4 versus MA0792.1_rc (POU5F1B_rc); m=5/42; ncol2=9; w=0; offset=0; strand=R; shift=5; score=0.683103; -----ATTwrCATA-- ; cor=; Ncor= a 0 0 0 0 0 9519.0 203.0 896.0 3220.0 3828.0 1790.0 9519.0 84.0 9519.0 0 0 c 0 0 0 0 0 750.0 97.0 856.0 65.0 1293.0 9519.0 206.0 67.0 808.0 0 0 g 0 0 0 0 0 537.0 65.0 144.0 51.0 9519.0 94.0 364.0 21.0 1778.0 0 0 t 0 0 0 0 0 1559.0 9519.0 9519.0 6299.0 398.0 322.0 171.0 9519.0 1326.0 0 0

MA0043.4_rc_shift6 (HLF_rc)
; oligos_6nt_mkv3_m4 versus MA0043.4_rc (HLF_rc); m=6/42; ncol2=9; w=0; offset=1; strand=R; shift=6; score=0.683063; ------rTTRCATAA- ; cor=; Ncor= a 0 0 0 0 0 0 6488.0 113.0 98.0 6653.0 189.0 22426.0 209.0 23271.0 23739.0 0 c 0 0 0 0 0 0 3300.0 189.0 48.0 199.0 21705.0 253.0 1344.0 895.0 148.0 0 g 0 0 0 0 0 0 13237.0 67.0 122.0 17203.0 112.0 1548.0 125.0 96.0 242.0 0 t 0 0 0 0 0 0 1399.0 24055.0 24156.0 369.0 2418.0 197.0 22746.0 162.0 295.0 0

MA0785.2_rc_shift5 (POU2F1_rc)
; oligos_6nt_mkv3_m4 versus MA0785.2_rc (POU2F1_rc); m=7/42; ncol2=9; w=0; offset=0; strand=R; shift=5; score= 0.6803; -----ATTwgCATA-- ; cor=; Ncor= a 0 0 0 0 0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 0 0 c 0 0 0 0 0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 0 0 g 0 0 0 0 0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 0 0 t 0 0 0 0 0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 0 0

MA0627.3_rc_shift5 (POU2F3_rc)
; oligos_6nt_mkv3_m4 versus MA0627.3_rc (POU2F3_rc); m=8/42; ncol2=9; w=0; offset=0; strand=R; shift=5; score= 0.6697; -----ATTTGCATa-- ; cor=; Ncor= a 0 0 0 0 0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 0 0 c 0 0 0 0 0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 0 0 g 0 0 0 0 0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 0 0 t 0 0 0 0 0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 0 0

MA0789.1_rc_shift5 (POU3F4_rc)
; oligos_6nt_mkv3_m4 versus MA0789.1_rc (POU3F4_rc); m=9/42; ncol2=9; w=0; offset=0; strand=R; shift=5; score=0.663355; -----ATTwGCATA-- ; cor=; Ncor= a 0 0 0 0 0 11117.0 168.0 885.0 4670.0 2565.0 245.0 11117.0 26.0 11117.0 0 0 c 0 0 0 0 0 292.0 88.0 315.0 56.0 602.0 11117.0 24.0 68.0 136.0 0 0 g 0 0 0 0 0 247.0 47.0 332.0 10.0 11117.0 19.0 59.0 23.0 349.0 0 0 t 0 0 0 0 0 705.0 11117.0 11117.0 6447.0 136.0 53.0 59.0 11117.0 941.0 0 0

MA0788.1_rc_shift3 (POU3F3_rc)
; oligos_6nt_mkv3_m4 versus MA0788.1_rc (POU3F3_rc); m=10/42; ncol2=13; w=-2; offset=-2; strand=R; shift=3; score=0.652146; ---waATTwGCATAww ; cor=; Ncor= a 0 0 0 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 c 0 0 0 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 g 0 0 0 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 t 0 0 0 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0

MA1607.2_rc_shift4 (Foxl2_rc)
; oligos_6nt_mkv3_m4 versus MA1607.2_rc (Foxl2_rc); m=11/42; ncol2=10; w=-1; offset=-1; strand=R; shift=4; score=0.624262; ----TGTTTACAtw-- ; cor=; Ncor= a 0 0 0 0 1270.0 1970.0 328.0 366.0 204.0 16284.0 479.0 12849.0 2785.0 8493.0 0 0 c 0 0 0 0 401.0 151.0 411.0 187.0 112.0 419.0 14648.0 1371.0 2107.0 1599.0 0 0 g 0 0 0 0 807.0 15698.0 216.0 336.0 558.0 301.0 367.0 896.0 2051.0 1576.0 0 0 t 0 0 0 0 15623.0 282.0 17146.0 17212.0 17227.0 1097.0 2607.0 2985.0 11158.0 6433.0 0 0

MA0787.1_rc_shift3 (POU3F2_rc)
; oligos_6nt_mkv3_m4 versus MA0787.1_rc (POU3F2_rc); m=12/42; ncol2=12; w=-2; offset=-2; strand=R; shift=3; score=0.617632; ---tmATTwGCATAw- ; cor=; Ncor= a 0 0 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 c 0 0 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 g 0 0 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 t 0 0 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0

MA0784.3_shift2 (POU1F1)
; oligos_6nt_mkv3_m4 versus MA0784.3 (POU1F1); m=13/42; ncol2=14; w=-3; offset=-3; strand=D; shift=2; score=0.613957; --CTmATTwGCATAwt ; cor=; Ncor= a 0 0 131.0 106.0 2281.0 4127.0 0.0 91.0 1564.0 419.0 54.0 4127.0 3.0 4127.0 2323.0 849.0 c 0 0 3623.0 126.0 1846.0 7.0 0.0 13.0 0.0 67.0 4127.0 9.0 3.0 5.0 165.0 702.0 g 0 0 372.0 220.0 192.0 28.0 1.0 2.0 0.0 3708.0 1.0 5.0 0.0 5.0 57.0 384.0 t 0 0 504.0 3907.0 262.0 31.0 4127.0 4127.0 2563.0 16.0 3.0 17.0 4127.0 59.0 1804.0 3278.0

MA0845.1_rc_shift3 (FOXB1_rc)
; oligos_6nt_mkv3_m4 versus MA0845.1_rc (FOXB1_rc); m=14/42; ncol2=11; w=-2; offset=-2; strand=R; shift=3; score=0.603075; ---aTrTTKACwTw-- ; cor=; Ncor= a 0 0 0 4008.0 147.0 4589.0 216.0 381.0 73.0 6841.0 124.0 4858.0 561.0 4448.0 0 0 c 0 0 0 556.0 157.0 104.0 47.0 0.0 75.0 113.0 6841.0 409.0 1498.0 190.0 0 0 g 0 0 0 573.0 0.0 2252.0 47.0 213.0 1950.0 240.0 54.0 218.0 263.0 272.0 0 0 t 0 0 0 1704.0 6841.0 28.0 6841.0 6841.0 4891.0 180.0 1159.0 1983.0 5343.0 2393.0 0 0

MA0507.3_rc_shift2 (POU2F2_rc)
; oligos_6nt_mkv3_m4 versus MA0507.3_rc (POU2F2_rc); m=15/42; ncol2=13; w=-3; offset=-3; strand=R; shift=2; score=0.590279; --cTmATTTGCATAw- ; cor=; Ncor= a 0 0 788.0 1065.0 5505.0 9207.0 8.0 57.0 1929.0 1193.0 111.0 9207.0 0.0 9207.0 3315.0 0 c 0 0 5392.0 851.0 3703.0 35.0 0.0 23.0 0.0 127.0 9207.0 2.0 0.0 4.0 2020.0 0 g 0 0 1301.0 648.0 862.0 8.0 5.0 7.0 0.0 8014.0 0.0 13.0 0.0 100.0 435.0 0 t 0 0 1726.0 6644.0 1399.0 56.0 9207.0 9207.0 7279.0 2.0 0.0 0.0 9207.0 34.0 5892.0 0

MA0032.2_rc_shift3 (FOXC1_rc)
; oligos_6nt_mkv3_m4 versus MA0032.2_rc (FOXC1_rc); m=16/42; ncol2=11; w=-2; offset=-2; strand=R; shift=3; score=0.572848; ---wTrTTKAYwTw-- ; cor=; Ncor= a 0 0 0 11787.0 184.0 9708.0 112.0 57.0 45.0 18489.0 51.0 10596.0 1386.0 12038.0 0 0 c 0 0 0 1107.0 433.0 165.0 141.0 0.0 21.0 390.0 13631.0 2422.0 4165.0 304.0 0 0 g 0 0 0 1558.0 27.0 8782.0 56.0 108.0 5372.0 1652.0 336.0 2008.0 728.0 772.0 0 0 t 0 0 0 6702.0 18489.0 122.0 18489.0 18489.0 13117.0 2496.0 4858.0 7893.0 14324.0 6452.0 0 0

MA0142.1_rc_shift5 (Pou5f1::Sox2_rc)
; oligos_6nt_mkv3_m4 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=17/42; ncol2=15; w=0; offset=0; strand=R; shift=5; score=0.563336; -----aTtTGCATrws ; cor=; Ncor= a 0 0 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 c 0 0 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 g 0 0 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 t 0 0 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0

MA1115.2_rc_shift6 (POU5F1_rc)
; oligos_6nt_mkv3_m4 versus MA1115.2_rc (POU5F1_rc); m=18/42; ncol2=7; w=0; offset=1; strand=R; shift=6; score=0.536457; ------TTTGCAT--- ; cor=; Ncor= a 0 0 0 0 0 0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 0 0 0 c 0 0 0 0 0 0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 0 0 0 g 0 0 0 0 0 0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 0 0 0 t 0 0 0 0 0 0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 0 0 0

MA0846.2_rc_shift3 (FOXC2_rc)
; oligos_6nt_mkv3_m4 versus MA0846.2_rc (FOXC2_rc); m=19/42; ncol2=11; w=-2; offset=-2; strand=R; shift=3; score=0.529306; ---wTRTTTAywTw-- ; cor=; Ncor= a 0 0 0 7160.0 215.0 6021.0 242.0 107.0 122.0 20456.0 136.0 9155.0 2080.0 11517.0 0 0 c 0 0 0 1710.0 328.0 68.0 279.0 81.0 87.0 321.0 14038.0 3129.0 5093.0 454.0 0 0 g 0 0 0 2087.0 101.0 14435.0 105.0 344.0 6759.0 3773.0 440.0 3476.0 1652.0 1279.0 0 0 t 0 0 0 13296.0 20456.0 31.0 20456.0 20456.0 20456.0 2005.0 6418.0 11301.0 20456.0 8939.0 0 0

MA0606.3_rc_shift5 (Nfat5_rc)
; oligos_6nt_mkv3_m4 versus MA0606.3_rc (Nfat5_rc); m=20/42; ncol2=8; w=0; offset=0; strand=R; shift=5; score=0.515715; -----TTTTCCAT--- ; cor=; Ncor= a 0 0 0 0 0 14.0 10.0 9.0 5.0 7.0 11.0 302.0 13.0 0 0 0 c 0 0 0 0 0 19.0 8.0 10.0 15.0 325.0 332.0 9.0 47.0 0 0 0 g 0 0 0 0 0 8.0 4.0 1.0 8.0 8.0 0.0 10.0 17.0 0 0 0 t 0 0 0 0 0 315.0 334.0 336.0 328.0 16.0 13.0 35.0 279.0 0 0 0

MA2118.1_rc_shift4 (FOXS1_rc)
; oligos_6nt_mkv3_m4 versus MA2118.1_rc (FOXS1_rc); m=21/42; ncol2=8; w=-1; offset=-1; strand=R; shift=4; score=0.493878; ----TGTTTACa---- ; cor=; Ncor= a 0 0 0 0 10.0 36.0 5.0 5.0 9.0 334.0 7.0 239.0 0 0 0 0 c 0 0 0 0 3.0 7.0 5.0 8.0 5.0 12.0 323.0 49.0 0 0 0 0 g 0 0 0 0 5.0 322.0 3.0 16.0 15.0 15.0 8.0 20.0 0 0 0 0 t 0 0 0 0 356.0 9.0 361.0 345.0 345.0 13.0 36.0 66.0 0 0 0 0

MA1962.1_shift4 (POU2F1::SOX2)
; oligos_6nt_mkv3_m4 versus MA1962.1 (POU2F1::SOX2); m=22/42; ncol2=17; w=-1; offset=-1; strand=D; shift=4; score=0.488669; ----mATTWrCATmAC ; cor=; Ncor= a 0 0 0 0 7886.0 15701.0 553.0 1136.0 5710.0 5841.0 1656.0 15595.0 32.0 7899.0 16152.0 376.0 c 0 0 0 0 4993.0 528.0 216.0 552.0 471.0 812.0 15582.0 113.0 154.0 5483.0 518.0 15839.0 g 0 0 0 0 2541.0 434.0 22.0 53.0 65.0 10408.0 70.0 501.0 49.0 2557.0 158.0 683.0 t 0 0 0 0 825.0 1325.0 16133.0 16109.0 14381.0 25.0 141.0 35.0 16010.0 306.0 629.0 2079.0

MA0047.4_rc_shift4 (FOXA2_rc)
; oligos_6nt_mkv3_m4 versus MA0047.4_rc (FOXA2_rc); m=23/42; ncol2=8; w=-1; offset=-1; strand=R; shift=4; score=0.482869; ----TGTTTACw---- ; cor=; Ncor= a 0 0 0 0 9418.0 59170.0 7805.0 10179.0 6283.0 254489.0 4144.0 117443.0 0 0 0 0 c 0 0 0 0 2984.0 3603.0 2805.0 6484.0 2641.0 1890.0 236311.0 38538.0 0 0 0 0 g 0 0 0 0 3086.0 196969.0 3329.0 22429.0 9424.0 2037.0 2928.0 12432.0 0 0 0 0 t 0 0 0 0 246665.0 2411.0 248214.0 223061.0 243805.0 3737.0 18770.0 93740.0 0 0 0 0

MA0042.2_rc_shift4 (FOXI1_rc)
; oligos_6nt_mkv3_m4 versus MA0042.2_rc (FOXI1_rc); m=24/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.435922; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 0.0 810.0 66.0 0.0 0.0 5175.0 0.0 0 0 0 0 0 c 0 0 0 0 25.0 48.0 29.0 0.0 37.0 35.0 5175.0 0 0 0 0 0 g 0 0 0 0 12.0 5175.0 23.0 23.0 540.0 60.0 39.0 0 0 0 0 0 t 0 0 0 0 5175.0 157.0 5175.0 5175.0 5175.0 74.0 618.0 0 0 0 0 0

MA1683.2_rc_shift4 (FOXA3_rc)
; oligos_6nt_mkv3_m4 versus MA1683.2_rc (FOXA3_rc); m=25/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.434997; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 1838.0 7272.0 984.0 978.0 1143.0 46586.0 2596.0 0 0 0 0 0 c 0 0 0 0 614.0 1205.0 934.0 977.0 636.0 690.0 40396.0 0 0 0 0 0 g 0 0 0 0 933.0 39509.0 973.0 3883.0 1980.0 903.0 1464.0 0 0 0 0 0 t 0 0 0 0 45552.0 951.0 46046.0 43099.0 45178.0 758.0 4481.0 0 0 0 0 0

MA0031.2_rc_shift4 (FOXD1_rc)
; oligos_6nt_mkv3_m4 versus MA0031.2_rc (FOXD1_rc); m=26/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.433755; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 0.0 1.0 0.0 0.0 0.0 20.0 1.0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 1.0 0.0 0.0 0.0 17.0 0 0 0 0 0 g 0 0 0 0 0.0 18.0 1.0 0.0 1.0 0.0 1.0 0 0 0 0 0 t 0 0 0 0 20.0 1.0 18.0 20.0 19.0 0.0 1.0 0 0 0 0 0

MA0019.2_rc_shift3 (Ddit3::Cebpa_rc)
; oligos_6nt_mkv3_m4 versus MA0019.2_rc (Ddit3::Cebpa_rc); m=27/42; ncol2=10; w=-2; offset=-2; strand=R; shift=3; score=0.433034; ---ggkATTGCAy--- ; cor=; Ncor= a 0 0 0 7.0 3.0 3.0 33.0 0.0 0.0 2.0 1.0 38.0 3.0 0 0 0 c 0 0 0 6.0 9.0 5.0 0.0 1.0 0.0 0.0 38.0 0.0 15.0 0 0 0 g 0 0 0 26.0 23.0 17.0 6.0 2.0 1.0 33.0 0.0 1.0 3.0 0 0 0 t 0 0 0 0.0 4.0 14.0 0.0 36.0 38.0 4.0 0.0 0.0 18.0 0 0 0

MA0481.4_rc_shift4 (FOXP1_rc)
; oligos_6nt_mkv3_m4 versus MA0481.4_rc (FOXP1_rc); m=28/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.432427; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 3609.0 10795.0 2069.0 2585.0 1947.0 71862.0 3111.0 0 0 0 0 0 c 0 0 0 0 749.0 1493.0 1132.0 1830.0 1073.0 920.0 59571.0 0 0 0 0 0 g 0 0 0 0 1904.0 61094.0 1487.0 5067.0 2095.0 727.0 1573.0 0 0 0 0 0 t 0 0 0 0 68456.0 1336.0 70030.0 65236.0 69603.0 1209.0 10463.0 0 0 0 0 0

MA2117.1_rc_shift4 (FOXP4_rc)
; oligos_6nt_mkv3_m4 versus MA2117.1_rc (FOXP4_rc); m=29/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.427493; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 776.0 2446.0 418.0 356.0 466.0 19792.0 1294.0 0 0 0 0 0 c 0 0 0 0 218.0 493.0 550.0 368.0 534.0 539.0 17315.0 0 0 0 0 0 g 0 0 0 0 443.0 18349.0 419.0 1330.0 1545.0 793.0 834.0 0 0 0 0 0 t 0 0 0 0 20230.0 379.0 20280.0 19613.0 19122.0 543.0 2224.0 0 0 0 0 0

MA0850.1_rc_shift4 (FOXP3_rc)
; oligos_6nt_mkv3_m4 versus MA0850.1_rc (FOXP3_rc); m=30/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.427139; ----TGTTTAy----- ; cor=; Ncor= a 0 0 0 0 0.0 39.0 0.0 8.0 31.0 211.0 0.0 0 0 0 0 0 c 0 0 0 0 18.0 32.0 49.0 9.0 0.0 0.0 137.0 0 0 0 0 0 g 0 0 0 0 0.0 211.0 15.0 0.0 0.0 52.0 0.0 0 0 0 0 0 t 0 0 0 0 211.0 0.0 211.0 211.0 211.0 20.0 74.0 0 0 0 0 0

MA1103.3_rc_shift4 (FOXK2_rc)
; oligos_6nt_mkv3_m4 versus MA1103.3_rc (FOXK2_rc); m=31/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.425366; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 505.0 1472.0 365.0 565.0 341.0 15782.0 694.0 0 0 0 0 0 c 0 0 0 0 170.0 426.0 391.0 436.0 148.0 327.0 12737.0 0 0 0 0 0 g 0 0 0 0 295.0 14282.0 330.0 1291.0 277.0 210.0 551.0 0 0 0 0 0 t 0 0 0 0 15709.0 499.0 15593.0 14387.0 15913.0 360.0 2697.0 0 0 0 0 0

MA0157.4_rc_shift4 (Foxo3_rc)
; oligos_6nt_mkv3_m4 versus MA0157.4_rc (Foxo3_rc); m=32/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.424008; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 823.0 1911.0 414.0 488.0 376.0 20732.0 650.0 0 0 0 0 0 c 0 0 0 0 361.0 361.0 464.0 333.0 328.0 1199.0 19202.0 0 0 0 0 0 g 0 0 0 0 587.0 21237.0 483.0 803.0 968.0 435.0 590.0 0 0 0 0 0 t 0 0 0 0 22141.0 403.0 22551.0 22288.0 22240.0 1546.0 3470.0 0 0 0 0 0

MA0852.3_rc_shift4 (FOXK1_rc)
; oligos_6nt_mkv3_m4 versus MA0852.3_rc (FOXK1_rc); m=33/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.42372; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 13.0 76.0 11.0 9.0 6.0 947.0 17.0 0 0 0 0 0 c 0 0 0 0 12.0 12.0 10.0 11.0 10.0 44.0 868.0 0 0 0 0 0 g 0 0 0 0 16.0 958.0 13.0 37.0 37.0 5.0 28.0 0 0 0 0 0 t 0 0 0 0 1015.0 10.0 1022.0 999.0 1003.0 60.0 143.0 0 0 0 0 0

MA0480.3_rc_shift4 (Foxo1_rc)
; oligos_6nt_mkv3_m4 versus MA0480.3_rc (Foxo1_rc); m=34/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.419173; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 354.0 757.0 249.0 220.0 296.0 11591.0 554.0 0 0 0 0 0 c 0 0 0 0 153.0 356.0 508.0 384.0 478.0 1025.0 11670.0 0 0 0 0 0 g 0 0 0 0 277.0 12710.0 387.0 849.0 934.0 555.0 481.0 0 0 0 0 0 t 0 0 0 0 13332.0 293.0 12972.0 12663.0 12408.0 945.0 1411.0 0 0 0 0 0

MA0848.1_rc_shift4 (FOXO4_rc)
; oligos_6nt_mkv3_m4 versus MA0848.1_rc (FOXO4_rc); m=35/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.416778; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 40.0 958.0 10.0 20.0 20.0 5378.0 0.0 0 0 0 0 0 c 0 0 0 0 10.0 33.0 90.0 19.0 32.0 123.0 5378.0 0 0 0 0 0 g 0 0 0 0 10.0 5378.0 0.0 146.0 1259.0 69.0 13.0 0 0 0 0 0 t 0 0 0 0 5378.0 58.0 5378.0 5378.0 5378.0 345.0 1669.0 0 0 0 0 0

MA0849.1_rc_shift4 (FOXO6_rc)
; oligos_6nt_mkv3_m4 versus MA0849.1_rc (FOXO6_rc); m=36/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.414193; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 0.0 385.0 0.0 26.0 0.0 7025.0 0.0 0 0 0 0 0 c 0 0 0 0 13.0 31.0 0.0 0.0 7.0 32.0 7025.0 0 0 0 0 0 g 0 0 0 0 0.0 7025.0 0.0 195.0 1147.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 7025.0 0.0 7025.0 7025.0 7025.0 154.0 1445.0 0 0 0 0 0

MA0033.2_rc_shift4 (FOXL1_rc)
; oligos_6nt_mkv3_m4 versus MA0033.2_rc (FOXL1_rc); m=37/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.40833; ----TGTTTAy----- ; cor=; Ncor= a 0 0 0 0 17.0 1057.0 0.0 15.0 0.0 4780.0 140.0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 50.0 0.0 57.0 0.0 2678.0 0 0 0 0 0 g 0 0 0 0 54.0 3723.0 82.0 38.0 628.0 416.0 13.0 0 0 0 0 0 t 0 0 0 0 4780.0 0.0 4780.0 4780.0 4780.0 10.0 2102.0 0 0 0 0 0

MA0624.3_rc_shift6 (Nfatc1_rc)
; oligos_6nt_mkv3_m4 versus MA0624.3_rc (Nfatc1_rc); m=38/42; ncol2=6; w=0; offset=1; strand=R; shift=6; score=0.406508; ------TTTCCA---- ; cor=; Ncor= a 0 0 0 0 0 0 124.0 39.0 54.0 55.0 17.0 5771.0 0 0 0 0 c 0 0 0 0 0 0 43.0 32.0 27.0 6058.0 6106.0 65.0 0 0 0 0 g 0 0 0 0 0 0 77.0 13.0 30.0 16.0 13.0 227.0 0 0 0 0 t 0 0 0 0 0 0 5947.0 6107.0 6080.0 62.0 55.0 128.0 0 0 0 0

MA0593.2_rc_shift3 (FOXP2_rc)
; oligos_6nt_mkv3_m4 versus MA0593.2_rc (FOXP2_rc); m=39/42; ncol2=9; w=-2; offset=-2; strand=R; shift=3; score=0.404358; ---yTGTTTACw---- ; cor=; Ncor= a 0 0 0 22.0 0.0 9.0 0.0 0.0 0.0 707.0 0.0 277.0 0 0 0 0 c 0 0 0 293.0 0.0 0.0 0.0 0.0 0.0 0.0 606.0 142.0 0 0 0 0 g 0 0 0 154.0 0.0 757.0 0.0 0.0 0.0 0.0 0.0 7.0 0 0 0 0 t 0 0 0 297.0 766.0 0.0 766.0 766.0 766.0 59.0 160.0 340.0 0 0 0 0

MA0041.3_rc_shift0 (FOXD3_rc)
; oligos_6nt_mkv3_m4 versus MA0041.3_rc (FOXD3_rc); m=40/42; ncol2=14; w=-5; offset=-5; strand=R; shift=0; score=0.403346; tGTTTRTTTdywtw-- ; cor=; Ncor= a 47.0 30.0 35.0 11.0 7.0 128.0 2.0 7.0 2.0 171.0 10.0 81.0 22.0 85.0 0 0 c 30.0 13.0 20.0 8.0 2.0 0.0 7.0 0.0 1.0 8.0 115.0 45.0 52.0 13.0 0 0 g 20.0 171.0 17.0 11.0 4.0 43.0 1.0 8.0 37.0 109.0 17.0 45.0 17.0 22.0 0 0 t 125.0 13.0 171.0 171.0 171.0 0.0 171.0 171.0 171.0 99.0 56.0 91.0 120.0 86.0 0 0

MA1478.2_shift6 (DMRTA2)
; oligos_6nt_mkv3_m4 versus MA1478.2 (DMRTA2); m=41/42; ncol2=6; w=0; offset=1; strand=D; shift=6; score=0.402882; ------GwTACA---- ; cor=; Ncor= a 0 0 0 0 0 0 0.0 727.0 578.0 1710.0 0.0 1710.0 0 0 0 0 c 0 0 0 0 0 0 1.0 527.0 147.0 9.0 1710.0 23.0 0 0 0 0 g 0 0 0 0 0 0 1710.0 10.0 29.0 71.0 0.0 78.0 0 0 0 0 t 0 0 0 0 0 0 6.0 983.0 1710.0 13.0 3.0 261.0 0 0 0 0

MA1606.2_rc_shift4 (Foxf1_rc)
; oligos_6nt_mkv3_m4 versus MA1606.2_rc (Foxf1_rc); m=42/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.401446; ----TGTTTAy----- ; cor=; Ncor= a 0 0 0 0 1916.0 4187.0 831.0 2538.0 903.0 57368.0 3653.0 0 0 0 0 0 c 0 0 0 0 443.0 522.0 1067.0 811.0 445.0 1158.0 33599.0 0 0 0 0 0 g 0 0 0 0 745.0 54394.0 475.0 2249.0 899.0 446.0 3754.0 0 0 0 0 0 t 0 0 0 0 56436.0 437.0 57167.0 53942.0 57293.0 568.0 18534.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m4_shift5 (oligos_6nt_mkv3_m4)				; oligos_6nt_mkv3_m4; m=0 (reference); ncol1=11; shift=5; ncol=16; -----atTTACATAws ; Alignment reference a 0 0 0 0 0 460 228 61 32 921 63 1109 80 1031 380 286 c 0 0 0 0 0 212 227 61 41 41 1038 34 77 47 227 324 g 0 0 0 0 0 267 182 29 23 187 29 15 56 43 199 301 t 0 0 0 0 0 257 559 1045 1100 47 66 38 983 75 390 285
MA0786.2_rc_shift5 (POU3F1_rc)				; oligos_6nt_mkv3_m4 versus MA0786.2_rc (POU3F1_rc); m=1/42; ncol2=10; w=0; offset=0; strand=R; shift=5; score=0.750678; -----ATTwrCATAw- ; cor=; Ncor= a 0 0 0 0 0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 c 0 0 0 0 0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 g 0 0 0 0 0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 t 0 0 0 0 0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0
MA0843.2_shift6 (TEF)				; oligos_6nt_mkv3_m4 versus MA0843.2 (TEF); m=2/42; ncol2=10; w=0; offset=1; strand=D; shift=6; score=0.717234; ------rTTACrTAAy ; cor=; Ncor= a 0 0 0 0 0 0 1971.0 90.0 107.0 3601.0 17.0 1324.0 0.0 3601.0 3601.0 0.0 c 0 0 0 0 0 0 372.0 18.0 0.0 0.0 3601.0 0.0 133.0 76.0 0.0 2120.0 g 0 0 0 0 0 0 1630.0 5.0 31.0 108.0 0.0 2277.0 43.0 11.0 19.0 269.0 t 0 0 0 0 0 0 8.0 3601.0 3601.0 0.0 446.0 0.0 3601.0 161.0 10.0 1481.0
MA0025.3_rc_shift6 (NFIL3_rc)				; oligos_6nt_mkv3_m4 versus MA0025.3_rc (NFIL3_rc); m=3/42; ncol2=9; w=0; offset=1; strand=R; shift=6; score=0.713015; ------aTTrCATAA- ; cor=; Ncor= a 0 0 0 0 0 0 13143.0 474.0 434.0 9180.0 610.0 20334.0 433.0 20606.0 20927.0 0 c 0 0 0 0 0 0 2701.0 360.0 171.0 454.0 20459.0 492.0 990.0 1714.0 518.0 0 g 0 0 0 0 0 0 4959.0 251.0 543.0 12004.0 467.0 1511.0 220.0 208.0 681.0 0 t 0 0 0 0 0 0 2193.0 21911.0 21848.0 1358.0 1460.0 659.0 21353.0 468.0 870.0 0
MA0639.2_shift6 (DBP)				; oligos_6nt_mkv3_m4 versus MA0639.2 (DBP); m=4/42; ncol2=10; w=0; offset=1; strand=D; shift=6; score=0.695648; ------rTTAYRTAAy ; cor=; Ncor= a 0 0 0 0 0 0 3706.0 5.0 4.0 7100.0 2.0 3180.0 3.0 7100.0 7100.0 158.0 c 0 0 0 0 0 0 1130.0 4.0 6.0 0.0 7100.0 17.0 541.0 288.0 1.0 3707.0 g 0 0 0 0 0 0 3393.0 2.0 602.0 498.0 21.0 7100.0 7.0 7.0 2.0 1543.0 t 0 0 0 0 0 0 93.0 7100.0 7100.0 4.0 2664.0 1.0 7100.0 6.0 2.0 3393.0
MA0792.1_rc_shift5 (POU5F1B_rc)				; oligos_6nt_mkv3_m4 versus MA0792.1_rc (POU5F1B_rc); m=5/42; ncol2=9; w=0; offset=0; strand=R; shift=5; score=0.683103; -----ATTwrCATA-- ; cor=; Ncor= a 0 0 0 0 0 9519.0 203.0 896.0 3220.0 3828.0 1790.0 9519.0 84.0 9519.0 0 0 c 0 0 0 0 0 750.0 97.0 856.0 65.0 1293.0 9519.0 206.0 67.0 808.0 0 0 g 0 0 0 0 0 537.0 65.0 144.0 51.0 9519.0 94.0 364.0 21.0 1778.0 0 0 t 0 0 0 0 0 1559.0 9519.0 9519.0 6299.0 398.0 322.0 171.0 9519.0 1326.0 0 0
MA0043.4_rc_shift6 (HLF_rc)				; oligos_6nt_mkv3_m4 versus MA0043.4_rc (HLF_rc); m=6/42; ncol2=9; w=0; offset=1; strand=R; shift=6; score=0.683063; ------rTTRCATAA- ; cor=; Ncor= a 0 0 0 0 0 0 6488.0 113.0 98.0 6653.0 189.0 22426.0 209.0 23271.0 23739.0 0 c 0 0 0 0 0 0 3300.0 189.0 48.0 199.0 21705.0 253.0 1344.0 895.0 148.0 0 g 0 0 0 0 0 0 13237.0 67.0 122.0 17203.0 112.0 1548.0 125.0 96.0 242.0 0 t 0 0 0 0 0 0 1399.0 24055.0 24156.0 369.0 2418.0 197.0 22746.0 162.0 295.0 0
MA0785.2_rc_shift5 (POU2F1_rc)				; oligos_6nt_mkv3_m4 versus MA0785.2_rc (POU2F1_rc); m=7/42; ncol2=9; w=0; offset=0; strand=R; shift=5; score= 0.6803; -----ATTwgCATA-- ; cor=; Ncor= a 0 0 0 0 0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 0 0 c 0 0 0 0 0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 0 0 g 0 0 0 0 0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 0 0 t 0 0 0 0 0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 0 0
MA0627.3_rc_shift5 (POU2F3_rc)				; oligos_6nt_mkv3_m4 versus MA0627.3_rc (POU2F3_rc); m=8/42; ncol2=9; w=0; offset=0; strand=R; shift=5; score= 0.6697; -----ATTTGCATa-- ; cor=; Ncor= a 0 0 0 0 0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 0 0 c 0 0 0 0 0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 0 0 g 0 0 0 0 0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 0 0 t 0 0 0 0 0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 0 0
MA0789.1_rc_shift5 (POU3F4_rc)				; oligos_6nt_mkv3_m4 versus MA0789.1_rc (POU3F4_rc); m=9/42; ncol2=9; w=0; offset=0; strand=R; shift=5; score=0.663355; -----ATTwGCATA-- ; cor=; Ncor= a 0 0 0 0 0 11117.0 168.0 885.0 4670.0 2565.0 245.0 11117.0 26.0 11117.0 0 0 c 0 0 0 0 0 292.0 88.0 315.0 56.0 602.0 11117.0 24.0 68.0 136.0 0 0 g 0 0 0 0 0 247.0 47.0 332.0 10.0 11117.0 19.0 59.0 23.0 349.0 0 0 t 0 0 0 0 0 705.0 11117.0 11117.0 6447.0 136.0 53.0 59.0 11117.0 941.0 0 0
MA0788.1_rc_shift3 (POU3F3_rc)				; oligos_6nt_mkv3_m4 versus MA0788.1_rc (POU3F3_rc); m=10/42; ncol2=13; w=-2; offset=-2; strand=R; shift=3; score=0.652146; ---waATTwGCATAww ; cor=; Ncor= a 0 0 0 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 c 0 0 0 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 g 0 0 0 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 t 0 0 0 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0
MA1607.2_rc_shift4 (Foxl2_rc)				; oligos_6nt_mkv3_m4 versus MA1607.2_rc (Foxl2_rc); m=11/42; ncol2=10; w=-1; offset=-1; strand=R; shift=4; score=0.624262; ----TGTTTACAtw-- ; cor=; Ncor= a 0 0 0 0 1270.0 1970.0 328.0 366.0 204.0 16284.0 479.0 12849.0 2785.0 8493.0 0 0 c 0 0 0 0 401.0 151.0 411.0 187.0 112.0 419.0 14648.0 1371.0 2107.0 1599.0 0 0 g 0 0 0 0 807.0 15698.0 216.0 336.0 558.0 301.0 367.0 896.0 2051.0 1576.0 0 0 t 0 0 0 0 15623.0 282.0 17146.0 17212.0 17227.0 1097.0 2607.0 2985.0 11158.0 6433.0 0 0
MA0787.1_rc_shift3 (POU3F2_rc)				; oligos_6nt_mkv3_m4 versus MA0787.1_rc (POU3F2_rc); m=12/42; ncol2=12; w=-2; offset=-2; strand=R; shift=3; score=0.617632; ---tmATTwGCATAw- ; cor=; Ncor= a 0 0 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 c 0 0 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 g 0 0 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 t 0 0 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0
MA0784.3_shift2 (POU1F1)				; oligos_6nt_mkv3_m4 versus MA0784.3 (POU1F1); m=13/42; ncol2=14; w=-3; offset=-3; strand=D; shift=2; score=0.613957; --CTmATTwGCATAwt ; cor=; Ncor= a 0 0 131.0 106.0 2281.0 4127.0 0.0 91.0 1564.0 419.0 54.0 4127.0 3.0 4127.0 2323.0 849.0 c 0 0 3623.0 126.0 1846.0 7.0 0.0 13.0 0.0 67.0 4127.0 9.0 3.0 5.0 165.0 702.0 g 0 0 372.0 220.0 192.0 28.0 1.0 2.0 0.0 3708.0 1.0 5.0 0.0 5.0 57.0 384.0 t 0 0 504.0 3907.0 262.0 31.0 4127.0 4127.0 2563.0 16.0 3.0 17.0 4127.0 59.0 1804.0 3278.0
MA0845.1_rc_shift3 (FOXB1_rc)				; oligos_6nt_mkv3_m4 versus MA0845.1_rc (FOXB1_rc); m=14/42; ncol2=11; w=-2; offset=-2; strand=R; shift=3; score=0.603075; ---aTrTTKACwTw-- ; cor=; Ncor= a 0 0 0 4008.0 147.0 4589.0 216.0 381.0 73.0 6841.0 124.0 4858.0 561.0 4448.0 0 0 c 0 0 0 556.0 157.0 104.0 47.0 0.0 75.0 113.0 6841.0 409.0 1498.0 190.0 0 0 g 0 0 0 573.0 0.0 2252.0 47.0 213.0 1950.0 240.0 54.0 218.0 263.0 272.0 0 0 t 0 0 0 1704.0 6841.0 28.0 6841.0 6841.0 4891.0 180.0 1159.0 1983.0 5343.0 2393.0 0 0
MA0507.3_rc_shift2 (POU2F2_rc)				; oligos_6nt_mkv3_m4 versus MA0507.3_rc (POU2F2_rc); m=15/42; ncol2=13; w=-3; offset=-3; strand=R; shift=2; score=0.590279; --cTmATTTGCATAw- ; cor=; Ncor= a 0 0 788.0 1065.0 5505.0 9207.0 8.0 57.0 1929.0 1193.0 111.0 9207.0 0.0 9207.0 3315.0 0 c 0 0 5392.0 851.0 3703.0 35.0 0.0 23.0 0.0 127.0 9207.0 2.0 0.0 4.0 2020.0 0 g 0 0 1301.0 648.0 862.0 8.0 5.0 7.0 0.0 8014.0 0.0 13.0 0.0 100.0 435.0 0 t 0 0 1726.0 6644.0 1399.0 56.0 9207.0 9207.0 7279.0 2.0 0.0 0.0 9207.0 34.0 5892.0 0
MA0032.2_rc_shift3 (FOXC1_rc)				; oligos_6nt_mkv3_m4 versus MA0032.2_rc (FOXC1_rc); m=16/42; ncol2=11; w=-2; offset=-2; strand=R; shift=3; score=0.572848; ---wTrTTKAYwTw-- ; cor=; Ncor= a 0 0 0 11787.0 184.0 9708.0 112.0 57.0 45.0 18489.0 51.0 10596.0 1386.0 12038.0 0 0 c 0 0 0 1107.0 433.0 165.0 141.0 0.0 21.0 390.0 13631.0 2422.0 4165.0 304.0 0 0 g 0 0 0 1558.0 27.0 8782.0 56.0 108.0 5372.0 1652.0 336.0 2008.0 728.0 772.0 0 0 t 0 0 0 6702.0 18489.0 122.0 18489.0 18489.0 13117.0 2496.0 4858.0 7893.0 14324.0 6452.0 0 0
MA0142.1_rc_shift5 (Pou5f1::Sox2_rc)				; oligos_6nt_mkv3_m4 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=17/42; ncol2=15; w=0; offset=0; strand=R; shift=5; score=0.563336; -----aTtTGCATrws ; cor=; Ncor= a 0 0 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 c 0 0 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 g 0 0 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 t 0 0 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0
MA1115.2_rc_shift6 (POU5F1_rc)				; oligos_6nt_mkv3_m4 versus MA1115.2_rc (POU5F1_rc); m=18/42; ncol2=7; w=0; offset=1; strand=R; shift=6; score=0.536457; ------TTTGCAT--- ; cor=; Ncor= a 0 0 0 0 0 0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 0 0 0 c 0 0 0 0 0 0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 0 0 0 g 0 0 0 0 0 0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 0 0 0 t 0 0 0 0 0 0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 0 0 0
MA0846.2_rc_shift3 (FOXC2_rc)				; oligos_6nt_mkv3_m4 versus MA0846.2_rc (FOXC2_rc); m=19/42; ncol2=11; w=-2; offset=-2; strand=R; shift=3; score=0.529306; ---wTRTTTAywTw-- ; cor=; Ncor= a 0 0 0 7160.0 215.0 6021.0 242.0 107.0 122.0 20456.0 136.0 9155.0 2080.0 11517.0 0 0 c 0 0 0 1710.0 328.0 68.0 279.0 81.0 87.0 321.0 14038.0 3129.0 5093.0 454.0 0 0 g 0 0 0 2087.0 101.0 14435.0 105.0 344.0 6759.0 3773.0 440.0 3476.0 1652.0 1279.0 0 0 t 0 0 0 13296.0 20456.0 31.0 20456.0 20456.0 20456.0 2005.0 6418.0 11301.0 20456.0 8939.0 0 0
MA0606.3_rc_shift5 (Nfat5_rc)				; oligos_6nt_mkv3_m4 versus MA0606.3_rc (Nfat5_rc); m=20/42; ncol2=8; w=0; offset=0; strand=R; shift=5; score=0.515715; -----TTTTCCAT--- ; cor=; Ncor= a 0 0 0 0 0 14.0 10.0 9.0 5.0 7.0 11.0 302.0 13.0 0 0 0 c 0 0 0 0 0 19.0 8.0 10.0 15.0 325.0 332.0 9.0 47.0 0 0 0 g 0 0 0 0 0 8.0 4.0 1.0 8.0 8.0 0.0 10.0 17.0 0 0 0 t 0 0 0 0 0 315.0 334.0 336.0 328.0 16.0 13.0 35.0 279.0 0 0 0
MA2118.1_rc_shift4 (FOXS1_rc)				; oligos_6nt_mkv3_m4 versus MA2118.1_rc (FOXS1_rc); m=21/42; ncol2=8; w=-1; offset=-1; strand=R; shift=4; score=0.493878; ----TGTTTACa---- ; cor=; Ncor= a 0 0 0 0 10.0 36.0 5.0 5.0 9.0 334.0 7.0 239.0 0 0 0 0 c 0 0 0 0 3.0 7.0 5.0 8.0 5.0 12.0 323.0 49.0 0 0 0 0 g 0 0 0 0 5.0 322.0 3.0 16.0 15.0 15.0 8.0 20.0 0 0 0 0 t 0 0 0 0 356.0 9.0 361.0 345.0 345.0 13.0 36.0 66.0 0 0 0 0
MA1962.1_shift4 (POU2F1::SOX2)				; oligos_6nt_mkv3_m4 versus MA1962.1 (POU2F1::SOX2); m=22/42; ncol2=17; w=-1; offset=-1; strand=D; shift=4; score=0.488669; ----mATTWrCATmAC ; cor=; Ncor= a 0 0 0 0 7886.0 15701.0 553.0 1136.0 5710.0 5841.0 1656.0 15595.0 32.0 7899.0 16152.0 376.0 c 0 0 0 0 4993.0 528.0 216.0 552.0 471.0 812.0 15582.0 113.0 154.0 5483.0 518.0 15839.0 g 0 0 0 0 2541.0 434.0 22.0 53.0 65.0 10408.0 70.0 501.0 49.0 2557.0 158.0 683.0 t 0 0 0 0 825.0 1325.0 16133.0 16109.0 14381.0 25.0 141.0 35.0 16010.0 306.0 629.0 2079.0
MA0047.4_rc_shift4 (FOXA2_rc)				; oligos_6nt_mkv3_m4 versus MA0047.4_rc (FOXA2_rc); m=23/42; ncol2=8; w=-1; offset=-1; strand=R; shift=4; score=0.482869; ----TGTTTACw---- ; cor=; Ncor= a 0 0 0 0 9418.0 59170.0 7805.0 10179.0 6283.0 254489.0 4144.0 117443.0 0 0 0 0 c 0 0 0 0 2984.0 3603.0 2805.0 6484.0 2641.0 1890.0 236311.0 38538.0 0 0 0 0 g 0 0 0 0 3086.0 196969.0 3329.0 22429.0 9424.0 2037.0 2928.0 12432.0 0 0 0 0 t 0 0 0 0 246665.0 2411.0 248214.0 223061.0 243805.0 3737.0 18770.0 93740.0 0 0 0 0
MA0042.2_rc_shift4 (FOXI1_rc)				; oligos_6nt_mkv3_m4 versus MA0042.2_rc (FOXI1_rc); m=24/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.435922; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 0.0 810.0 66.0 0.0 0.0 5175.0 0.0 0 0 0 0 0 c 0 0 0 0 25.0 48.0 29.0 0.0 37.0 35.0 5175.0 0 0 0 0 0 g 0 0 0 0 12.0 5175.0 23.0 23.0 540.0 60.0 39.0 0 0 0 0 0 t 0 0 0 0 5175.0 157.0 5175.0 5175.0 5175.0 74.0 618.0 0 0 0 0 0
MA1683.2_rc_shift4 (FOXA3_rc)				; oligos_6nt_mkv3_m4 versus MA1683.2_rc (FOXA3_rc); m=25/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.434997; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 1838.0 7272.0 984.0 978.0 1143.0 46586.0 2596.0 0 0 0 0 0 c 0 0 0 0 614.0 1205.0 934.0 977.0 636.0 690.0 40396.0 0 0 0 0 0 g 0 0 0 0 933.0 39509.0 973.0 3883.0 1980.0 903.0 1464.0 0 0 0 0 0 t 0 0 0 0 45552.0 951.0 46046.0 43099.0 45178.0 758.0 4481.0 0 0 0 0 0
MA0031.2_rc_shift4 (FOXD1_rc)				; oligos_6nt_mkv3_m4 versus MA0031.2_rc (FOXD1_rc); m=26/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.433755; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 0.0 1.0 0.0 0.0 0.0 20.0 1.0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 1.0 0.0 0.0 0.0 17.0 0 0 0 0 0 g 0 0 0 0 0.0 18.0 1.0 0.0 1.0 0.0 1.0 0 0 0 0 0 t 0 0 0 0 20.0 1.0 18.0 20.0 19.0 0.0 1.0 0 0 0 0 0
MA0019.2_rc_shift3 (Ddit3::Cebpa_rc)				; oligos_6nt_mkv3_m4 versus MA0019.2_rc (Ddit3::Cebpa_rc); m=27/42; ncol2=10; w=-2; offset=-2; strand=R; shift=3; score=0.433034; ---ggkATTGCAy--- ; cor=; Ncor= a 0 0 0 7.0 3.0 3.0 33.0 0.0 0.0 2.0 1.0 38.0 3.0 0 0 0 c 0 0 0 6.0 9.0 5.0 0.0 1.0 0.0 0.0 38.0 0.0 15.0 0 0 0 g 0 0 0 26.0 23.0 17.0 6.0 2.0 1.0 33.0 0.0 1.0 3.0 0 0 0 t 0 0 0 0.0 4.0 14.0 0.0 36.0 38.0 4.0 0.0 0.0 18.0 0 0 0
MA0481.4_rc_shift4 (FOXP1_rc)				; oligos_6nt_mkv3_m4 versus MA0481.4_rc (FOXP1_rc); m=28/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.432427; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 3609.0 10795.0 2069.0 2585.0 1947.0 71862.0 3111.0 0 0 0 0 0 c 0 0 0 0 749.0 1493.0 1132.0 1830.0 1073.0 920.0 59571.0 0 0 0 0 0 g 0 0 0 0 1904.0 61094.0 1487.0 5067.0 2095.0 727.0 1573.0 0 0 0 0 0 t 0 0 0 0 68456.0 1336.0 70030.0 65236.0 69603.0 1209.0 10463.0 0 0 0 0 0
MA2117.1_rc_shift4 (FOXP4_rc)				; oligos_6nt_mkv3_m4 versus MA2117.1_rc (FOXP4_rc); m=29/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.427493; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 776.0 2446.0 418.0 356.0 466.0 19792.0 1294.0 0 0 0 0 0 c 0 0 0 0 218.0 493.0 550.0 368.0 534.0 539.0 17315.0 0 0 0 0 0 g 0 0 0 0 443.0 18349.0 419.0 1330.0 1545.0 793.0 834.0 0 0 0 0 0 t 0 0 0 0 20230.0 379.0 20280.0 19613.0 19122.0 543.0 2224.0 0 0 0 0 0
MA0850.1_rc_shift4 (FOXP3_rc)				; oligos_6nt_mkv3_m4 versus MA0850.1_rc (FOXP3_rc); m=30/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.427139; ----TGTTTAy----- ; cor=; Ncor= a 0 0 0 0 0.0 39.0 0.0 8.0 31.0 211.0 0.0 0 0 0 0 0 c 0 0 0 0 18.0 32.0 49.0 9.0 0.0 0.0 137.0 0 0 0 0 0 g 0 0 0 0 0.0 211.0 15.0 0.0 0.0 52.0 0.0 0 0 0 0 0 t 0 0 0 0 211.0 0.0 211.0 211.0 211.0 20.0 74.0 0 0 0 0 0
MA1103.3_rc_shift4 (FOXK2_rc)				; oligos_6nt_mkv3_m4 versus MA1103.3_rc (FOXK2_rc); m=31/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.425366; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 505.0 1472.0 365.0 565.0 341.0 15782.0 694.0 0 0 0 0 0 c 0 0 0 0 170.0 426.0 391.0 436.0 148.0 327.0 12737.0 0 0 0 0 0 g 0 0 0 0 295.0 14282.0 330.0 1291.0 277.0 210.0 551.0 0 0 0 0 0 t 0 0 0 0 15709.0 499.0 15593.0 14387.0 15913.0 360.0 2697.0 0 0 0 0 0
MA0157.4_rc_shift4 (Foxo3_rc)				; oligos_6nt_mkv3_m4 versus MA0157.4_rc (Foxo3_rc); m=32/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.424008; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 823.0 1911.0 414.0 488.0 376.0 20732.0 650.0 0 0 0 0 0 c 0 0 0 0 361.0 361.0 464.0 333.0 328.0 1199.0 19202.0 0 0 0 0 0 g 0 0 0 0 587.0 21237.0 483.0 803.0 968.0 435.0 590.0 0 0 0 0 0 t 0 0 0 0 22141.0 403.0 22551.0 22288.0 22240.0 1546.0 3470.0 0 0 0 0 0
MA0852.3_rc_shift4 (FOXK1_rc)				; oligos_6nt_mkv3_m4 versus MA0852.3_rc (FOXK1_rc); m=33/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.42372; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 13.0 76.0 11.0 9.0 6.0 947.0 17.0 0 0 0 0 0 c 0 0 0 0 12.0 12.0 10.0 11.0 10.0 44.0 868.0 0 0 0 0 0 g 0 0 0 0 16.0 958.0 13.0 37.0 37.0 5.0 28.0 0 0 0 0 0 t 0 0 0 0 1015.0 10.0 1022.0 999.0 1003.0 60.0 143.0 0 0 0 0 0
MA0480.3_rc_shift4 (Foxo1_rc)				; oligos_6nt_mkv3_m4 versus MA0480.3_rc (Foxo1_rc); m=34/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.419173; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 354.0 757.0 249.0 220.0 296.0 11591.0 554.0 0 0 0 0 0 c 0 0 0 0 153.0 356.0 508.0 384.0 478.0 1025.0 11670.0 0 0 0 0 0 g 0 0 0 0 277.0 12710.0 387.0 849.0 934.0 555.0 481.0 0 0 0 0 0 t 0 0 0 0 13332.0 293.0 12972.0 12663.0 12408.0 945.0 1411.0 0 0 0 0 0
MA0848.1_rc_shift4 (FOXO4_rc)				; oligos_6nt_mkv3_m4 versus MA0848.1_rc (FOXO4_rc); m=35/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.416778; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 40.0 958.0 10.0 20.0 20.0 5378.0 0.0 0 0 0 0 0 c 0 0 0 0 10.0 33.0 90.0 19.0 32.0 123.0 5378.0 0 0 0 0 0 g 0 0 0 0 10.0 5378.0 0.0 146.0 1259.0 69.0 13.0 0 0 0 0 0 t 0 0 0 0 5378.0 58.0 5378.0 5378.0 5378.0 345.0 1669.0 0 0 0 0 0
MA0849.1_rc_shift4 (FOXO6_rc)				; oligos_6nt_mkv3_m4 versus MA0849.1_rc (FOXO6_rc); m=36/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.414193; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 0.0 385.0 0.0 26.0 0.0 7025.0 0.0 0 0 0 0 0 c 0 0 0 0 13.0 31.0 0.0 0.0 7.0 32.0 7025.0 0 0 0 0 0 g 0 0 0 0 0.0 7025.0 0.0 195.0 1147.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 7025.0 0.0 7025.0 7025.0 7025.0 154.0 1445.0 0 0 0 0 0
MA0033.2_rc_shift4 (FOXL1_rc)				; oligos_6nt_mkv3_m4 versus MA0033.2_rc (FOXL1_rc); m=37/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.40833; ----TGTTTAy----- ; cor=; Ncor= a 0 0 0 0 17.0 1057.0 0.0 15.0 0.0 4780.0 140.0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 50.0 0.0 57.0 0.0 2678.0 0 0 0 0 0 g 0 0 0 0 54.0 3723.0 82.0 38.0 628.0 416.0 13.0 0 0 0 0 0 t 0 0 0 0 4780.0 0.0 4780.0 4780.0 4780.0 10.0 2102.0 0 0 0 0 0
MA0624.3_rc_shift6 (Nfatc1_rc)				; oligos_6nt_mkv3_m4 versus MA0624.3_rc (Nfatc1_rc); m=38/42; ncol2=6; w=0; offset=1; strand=R; shift=6; score=0.406508; ------TTTCCA---- ; cor=; Ncor= a 0 0 0 0 0 0 124.0 39.0 54.0 55.0 17.0 5771.0 0 0 0 0 c 0 0 0 0 0 0 43.0 32.0 27.0 6058.0 6106.0 65.0 0 0 0 0 g 0 0 0 0 0 0 77.0 13.0 30.0 16.0 13.0 227.0 0 0 0 0 t 0 0 0 0 0 0 5947.0 6107.0 6080.0 62.0 55.0 128.0 0 0 0 0
MA0593.2_rc_shift3 (FOXP2_rc)				; oligos_6nt_mkv3_m4 versus MA0593.2_rc (FOXP2_rc); m=39/42; ncol2=9; w=-2; offset=-2; strand=R; shift=3; score=0.404358; ---yTGTTTACw---- ; cor=; Ncor= a 0 0 0 22.0 0.0 9.0 0.0 0.0 0.0 707.0 0.0 277.0 0 0 0 0 c 0 0 0 293.0 0.0 0.0 0.0 0.0 0.0 0.0 606.0 142.0 0 0 0 0 g 0 0 0 154.0 0.0 757.0 0.0 0.0 0.0 0.0 0.0 7.0 0 0 0 0 t 0 0 0 297.0 766.0 0.0 766.0 766.0 766.0 59.0 160.0 340.0 0 0 0 0
MA0041.3_rc_shift0 (FOXD3_rc)				; oligos_6nt_mkv3_m4 versus MA0041.3_rc (FOXD3_rc); m=40/42; ncol2=14; w=-5; offset=-5; strand=R; shift=0; score=0.403346; tGTTTRTTTdywtw-- ; cor=; Ncor= a 47.0 30.0 35.0 11.0 7.0 128.0 2.0 7.0 2.0 171.0 10.0 81.0 22.0 85.0 0 0 c 30.0 13.0 20.0 8.0 2.0 0.0 7.0 0.0 1.0 8.0 115.0 45.0 52.0 13.0 0 0 g 20.0 171.0 17.0 11.0 4.0 43.0 1.0 8.0 37.0 109.0 17.0 45.0 17.0 22.0 0 0 t 125.0 13.0 171.0 171.0 171.0 0.0 171.0 171.0 171.0 99.0 56.0 91.0 120.0 86.0 0 0
MA1478.2_shift6 (DMRTA2)				; oligos_6nt_mkv3_m4 versus MA1478.2 (DMRTA2); m=41/42; ncol2=6; w=0; offset=1; strand=D; shift=6; score=0.402882; ------GwTACA---- ; cor=; Ncor= a 0 0 0 0 0 0 0.0 727.0 578.0 1710.0 0.0 1710.0 0 0 0 0 c 0 0 0 0 0 0 1.0 527.0 147.0 9.0 1710.0 23.0 0 0 0 0 g 0 0 0 0 0 0 1710.0 10.0 29.0 71.0 0.0 78.0 0 0 0 0 t 0 0 0 0 0 0 6.0 983.0 1710.0 13.0 3.0 261.0 0 0 0 0
MA1606.2_rc_shift4 (Foxf1_rc)				; oligos_6nt_mkv3_m4 versus MA1606.2_rc (Foxf1_rc); m=42/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.401446; ----TGTTTAy----- ; cor=; Ncor= a 0 0 0 0 1916.0 4187.0 831.0 2538.0 903.0 57368.0 3653.0 0 0 0 0 0 c 0 0 0 0 443.0 522.0 1067.0 811.0 445.0 1158.0 33599.0 0 0 0 0 0 g 0 0 0 0 745.0 54394.0 475.0 2249.0 899.0 446.0 3754.0 0 0 0 0 0 t 0 0 0 0 56436.0 437.0 57167.0 53942.0 57293.0 568.0 18534.0 0 0 0 0 0