/var/www/html/rsat/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	match_table_txt	$RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf
		file1	1	14	717
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv3_m5 MA0515.1 oligos_6nt_mkv3_m5 Sox6 0.822 0.587 14 10 10 14 0.7143 0.7143 1.0000 R 2
oligos_6nt_mkv3_m5 MA0867.3 oligos_6nt_mkv3_m5 SOX4 0.939 0.536 14 8 8 14 0.5714 0.5714 1.0000 D 4
oligos_6nt_mkv3_m5 MA0041.3 oligos_6nt_mkv3_m5 FOXD3 0.702 0.526 14 14 12 16 0.7500 0.8571 0.8571 D -2
oligos_6nt_mkv3_m5 MA0851.2 oligos_6nt_mkv3_m5 Foxj3 0.815 0.524 14 9 9 14 0.6429 0.6429 1.0000 D 1
oligos_6nt_mkv3_m5 MA0078.3 oligos_6nt_mkv3_m5 Sox17 0.711 0.508 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv3_m5 MA0593.2 oligos_6nt_mkv3_m5 FOXP2 0.784 0.504 14 9 9 14 0.6429 0.6429 1.0000 D 0
oligos_6nt_mkv3_m5 MA0030.2 oligos_6nt_mkv3_m5 FOXF2 0.783 0.504 14 9 9 14 0.6429 0.6429 1.0000 D 0
oligos_6nt_mkv3_m5 MA0869.3 oligos_6nt_mkv3_m5 Sox11 0.865 0.494 14 8 8 14 0.5714 0.5714 1.0000 D 3
oligos_6nt_mkv3_m5 MA1603.2 oligos_6nt_mkv3_m5 Dmrt1 0.750 0.482 14 9 9 14 0.6429 0.6429 1.0000 D 4
oligos_6nt_mkv3_m5 MA0614.1 oligos_6nt_mkv3_m5 Foxj2 0.828 0.473 14 8 8 14 0.5714 0.5714 1.0000 D 1
oligos_6nt_mkv3_m5 MA1487.3 oligos_6nt_mkv3_m5 FOXE1 0.878 0.465 14 12 9 17 0.5294 0.6429 0.7500 D -3
oligos_6nt_mkv3_m5 MA1489.1 oligos_6nt_mkv3_m5 FOXN3 0.811 0.464 14 8 8 14 0.5714 0.5714 1.0000 D 1
oligos_6nt_mkv3_m5 MA0613.1 oligos_6nt_mkv3_m5 FOXG1 0.800 0.457 14 8 8 14 0.5714 0.5714 1.0000 D 1
oligos_6nt_mkv3_m5 MA0846.2 oligos_6nt_mkv3_m5 FOXC2 0.805 0.453 14 11 9 16 0.5625 0.6429 0.8182 D -2
oligos_6nt_mkv3_m5 MA2118.1 oligos_6nt_mkv3_m5 FOXS1 0.775 0.443 14 8 8 14 0.5714 0.5714 1.0000 D 0
oligos_6nt_mkv3_m5 MA0087.3 oligos_6nt_mkv3_m5 Sox5 0.763 0.436 14 8 8 14 0.5714 0.5714 1.0000 D 4
oligos_6nt_mkv3_m5 MA1125.2 oligos_6nt_mkv3_m5 ZNF384 0.753 0.430 14 8 8 14 0.5714 0.5714 1.0000 D 2
oligos_6nt_mkv3_m5 MA0047.4 oligos_6nt_mkv3_m5 FOXA2 0.749 0.428 14 8 8 14 0.5714 0.5714 1.0000 D 0
oligos_6nt_mkv3_m5 MA0084.2 oligos_6nt_mkv3_m5 SRY 0.854 0.427 14 7 7 14 0.5000 0.5000 1.0000 D 3
oligos_6nt_mkv3_m5 MA0442.3 oligos_6nt_mkv3_m5 SOX10 0.988 0.424 14 6 6 14 0.4286 0.4286 1.0000 D 5
oligos_6nt_mkv3_m5 MA0768.3 oligos_6nt_mkv3_m5 Lef1 0.732 0.418 14 8 8 14 0.5714 0.5714 1.0000 R 4
oligos_6nt_mkv3_m5 MA1152.2 oligos_6nt_mkv3_m5 SOX15 0.834 0.417 14 7 7 14 0.5000 0.5000 1.0000 R 5
oligos_6nt_mkv3_m5 MA1606.2 oligos_6nt_mkv3_m5 Foxf1 0.828 0.414 14 7 7 14 0.5000 0.5000 1.0000 D 1
oligos_6nt_mkv3_m5 MA0850.1 oligos_6nt_mkv3_m5 FOXP3 0.823 0.412 14 7 7 14 0.5000 0.5000 1.0000 D 1
oligos_6nt_mkv3_m5 MA0033.2 oligos_6nt_mkv3_m5 FOXL1 0.819 0.410 14 7 7 14 0.5000 0.5000 1.0000 D 1
oligos_6nt_mkv3_m5 MA0480.3 oligos_6nt_mkv3_m5 Foxo1 0.817 0.408 14 7 7 14 0.5000 0.5000 1.0000 D 1
oligos_6nt_mkv3_m5 MA0157.4 oligos_6nt_mkv3_m5 Foxo3 0.817 0.408 14 7 7 14 0.5000 0.5000 1.0000 D 1
oligos_6nt_mkv3_m5 MA0868.3 oligos_6nt_mkv3_m5 SOX8 0.816 0.408 14 7 7 14 0.5000 0.5000 1.0000 D 4
oligos_6nt_mkv3_m5 MA0852.3 oligos_6nt_mkv3_m5 FOXK1 0.816 0.408 14 7 7 14 0.5000 0.5000 1.0000 D 1
oligos_6nt_mkv3_m5 MA1563.2 oligos_6nt_mkv3_m5 SOX18 0.709 0.405 14 8 8 14 0.5714 0.5714 1.0000 D 4
oligos_6nt_mkv3_m5 MA0077.2 oligos_6nt_mkv3_m5 SOX9 0.709 0.405 14 8 8 14 0.5714 0.5714 1.0000 R 4
oligos_6nt_mkv3_m5 MA0848.1 oligos_6nt_mkv3_m5 FOXO4 0.809 0.404 14 7 7 14 0.5000 0.5000 1.0000 D 1 
 Host name	rsat
 Job started	2026-03-04.110038
 Job done	2026-03-04.110057
 Seconds	3.53
	user	3.53
	system	1.23
	cuser	12.78
;	csystem	1.46