One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/oligos_6nt_mkv3_m5/peak-motifs_oligos_6nt_mkv3_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m5_shift3 ; 33 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m5_shift3 (oligos_6nt_mkv3_m5)
; oligos_6nt_mkv3_m5; m=0 (reference); ncol1=14; shift=3; ncol=17; ---amaAAACAAAGcma ; Alignment reference a 0 0 0 265 218 421 586 628 671 13 688 646 649 124 171 263 273 c 0 0 0 119 225 95 25 34 9 643 10 30 16 62 335 187 152 g 0 0 0 178 148 95 24 29 28 32 8 25 24 492 127 139 151 t 0 0 0 155 126 106 82 26 9 29 11 16 28 39 84 128 141

MA0515.1_rc_shift5 (Sox6_rc)
; oligos_6nt_mkv3_m5 versus MA0515.1_rc (Sox6_rc); m=1/32; ncol2=10; w=0; offset=2; strand=R; shift=5; score=0.587115; -----rrrACAAwGg-- ; cor=; Ncor= a 0 0 0 0 0 128.0 133.0 129.0 249.0 0.0 249.0 249.0 88.0 28.0 56.0 0 0 c 0 0 0 0 0 31.0 0.0 5.0 0.0 249.0 0.0 0.0 0.0 0.0 50.0 0 0 g 0 0 0 0 0 76.0 112.0 115.0 0.0 0.0 0.0 0.0 0.0 221.0 139.0 0 0 t 0 0 0 0 0 14.0 4.0 0.0 0.0 0.0 0.0 0.0 161.0 0.0 4.0 0 0

MA0867.3_shift7 (SOX4)
; oligos_6nt_mkv3_m5 versus MA0867.3 (SOX4); m=2/32; ncol2=8; w=0; offset=4; strand=D; shift=7; score=0.536403; -------aACAAwGr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 0 0 c 0 0 0 0 0 0 0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 0 0 g 0 0 0 0 0 0 0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 0 0 t 0 0 0 0 0 0 0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0 0 0

MA0041.3_shift1 (FOXD3)
; oligos_6nt_mkv3_m5 versus MA0041.3 (FOXD3); m=3/32; ncol2=14; w=-2; offset=-2; strand=D; shift=1; score=0.526326; -wawrhAAAYAAACa-- ; cor=; Ncor= a 0 86.0 120.0 91.0 56.0 99.0 171.0 171.0 171.0 0.0 171.0 171.0 171.0 13.0 125.0 0 0 c 0 22.0 17.0 45.0 17.0 109.0 37.0 8.0 1.0 43.0 4.0 11.0 17.0 171.0 20.0 0 0 g 0 13.0 52.0 45.0 115.0 8.0 1.0 0.0 7.0 0.0 2.0 8.0 20.0 13.0 30.0 0 0 t 0 85.0 22.0 81.0 10.0 171.0 2.0 7.0 2.0 128.0 7.0 11.0 35.0 30.0 47.0 0 0

MA0851.2_shift4 (Foxj3)
; oligos_6nt_mkv3_m5 versus MA0851.2 (Foxj3); m=4/32; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.523643; ----RTAAACAAw---- ; cor=; Ncor= a 0 0 0 0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 0 0 0 0 c 0 0 0 0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 0 0 0 0 g 0 0 0 0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 0 0 0 0 t 0 0 0 0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 0 0 0 0

MA0078.3_shift5 (Sox17)
; oligos_6nt_mkv3_m5 versus MA0078.3 (Sox17); m=5/32; ncol2=10; w=0; offset=2; strand=D; shift=5; score=0.507936; -----agAACAATGG-- ; cor=; Ncor= a 0 0 0 0 0 7836.0 2720.0 8708.0 11818.0 271.0 11906.0 11634.0 1005.0 1324.0 1224.0 0 0 c 0 0 0 0 0 957.0 885.0 1111.0 124.0 11241.0 140.0 258.0 138.0 251.0 1012.0 0 0 g 0 0 0 0 0 1889.0 6638.0 1561.0 163.0 490.0 105.0 281.0 189.0 10241.0 9181.0 0 0 t 0 0 0 0 0 1605.0 2044.0 907.0 182.0 285.0 136.0 114.0 10955.0 471.0 870.0 0 0

MA0593.2_shift3 (FOXP2)
; oligos_6nt_mkv3_m5 versus MA0593.2 (FOXP2); m=6/32; ncol2=9; w=0; offset=0; strand=D; shift=3; score=0.503943; ---wGTAAACAr----- ; cor=; Ncor= a 0 0 0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 0 0 0 0 0 c 0 0 0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 0 0 0 0 0 g 0 0 0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 0 0 0 0 0 t 0 0 0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 0 0 0 0 0

MA0030.2_shift3 (FOXF2)
; oligos_6nt_mkv3_m5 versus MA0030.2 (FOXF2); m=7/32; ncol2=9; w=0; offset=0; strand=D; shift=3; score=0.503562; ---sRTAAACAa----- ; cor=; Ncor= a 0 0 0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 0 0 0 0 0 c 0 0 0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 0 0 0 0 0 g 0 0 0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 0 0 0 0 0 t 0 0 0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 0 0 0 0 0

MA0869.3_shift6 (Sox11)
; oligos_6nt_mkv3_m5 versus MA0869.3 (Sox11); m=8/32; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.494011; ------GAACAAAG--- ; cor=; Ncor= a 0 0 0 0 0 0 1014.0 7912.0 9856.0 119.0 10020.0 9676.0 9276.0 506.0 0 0 0 c 0 0 0 0 0 0 764.0 766.0 100.0 9471.0 108.0 264.0 61.0 148.0 0 0 0 g 0 0 0 0 0 0 8063.0 1298.0 211.0 501.0 49.0 248.0 233.0 9486.0 0 0 0 t 0 0 0 0 0 0 407.0 272.0 81.0 157.0 71.0 60.0 678.0 108.0 0 0 0

MA1603.2_shift7 (Dmrt1)
; oligos_6nt_mkv3_m5 versus MA1603.2 (Dmrt1); m=9/32; ncol2=9; w=0; offset=4; strand=D; shift=7; score=0.48193; -------tACAAWGTa- ; cor=; Ncor= a 0 0 0 0 0 0 0 3915.0 17933.0 211.0 17489.0 15568.0 12433.0 727.0 547.0 10367.0 0 c 0 0 0 0 0 0 0 1228.0 69.0 17633.0 110.0 482.0 205.0 185.0 161.0 1233.0 0 g 0 0 0 0 0 0 0 918.0 82.0 139.0 104.0 456.0 322.0 17032.0 200.0 2521.0 0 t 0 0 0 0 0 0 0 12234.0 211.0 312.0 592.0 1789.0 5335.0 351.0 17387.0 4174.0 0

MA0614.1_shift4 (Foxj2)
; oligos_6nt_mkv3_m5 versus MA0614.1 (Foxj2); m=10/32; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.472946; ----rTAAACAa----- ; cor=; Ncor= a 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 0 0 c 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 0 0 g 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 0 0 t 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0 0 0

MA1487.3_shift0 (FOXE1)
; oligos_6nt_mkv3_m5 versus MA1487.3 (FOXE1); m=11/32; ncol2=12; w=-3; offset=-3; strand=D; shift=0; score=0.464897; yTAARyAAACAa----- ; cor=; Ncor= a 86.0 581.0 3126.0 2547.0 2255.0 587.0 3126.0 3126.0 3126.0 0.0 3126.0 2026.0 0 0 0 0 0 c 1646.0 43.0 28.0 113.0 117.0 1062.0 362.0 90.0 0.0 3126.0 32.0 392.0 0 0 0 0 0 g 57.0 0.0 402.0 116.0 871.0 17.0 0.0 0.0 23.0 0.0 18.0 258.0 0 0 0 0 0 t 1479.0 2545.0 43.0 579.0 27.0 2064.0 20.0 53.0 9.0 85.0 110.0 450.0 0 0 0 0 0

MA1489.1_shift4 (FOXN3)
; oligos_6nt_mkv3_m5 versus MA1489.1 (FOXN3); m=12/32; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.463516; ----GTAAACAA----- ; cor=; Ncor= a 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 0 0 c 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 0 0 g 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 0 t 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 0

MA0613.1_shift4 (FOXG1)
; oligos_6nt_mkv3_m5 versus MA0613.1 (FOXG1); m=13/32; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.457121; ----rTAAACAw----- ; cor=; Ncor= a 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 0 0 c 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 0 0 g 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 0 0 t 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0 0 0

MA0846.2_shift1 (FOXC2)
; oligos_6nt_mkv3_m5 versus MA0846.2 (FOXC2); m=14/32; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.452657; -wAwrTAAAYAw----- ; cor=; Ncor= a 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 0 0 0 0 0 c 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 0 0 0 0 0 g 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 0 0 0 0 0 t 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 0 0 0 0 0

MA2118.1_shift3 (FOXS1)
; oligos_6nt_mkv3_m5 versus MA2118.1 (FOXS1); m=15/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.442981; ---tGTAAACA------ ; cor=; Ncor= a 0 0 0 66.0 36.0 13.0 345.0 345.0 361.0 9.0 356.0 0 0 0 0 0 0 c 0 0 0 20.0 8.0 15.0 15.0 16.0 3.0 322.0 5.0 0 0 0 0 0 0 g 0 0 0 49.0 323.0 12.0 5.0 8.0 5.0 7.0 3.0 0 0 0 0 0 0 t 0 0 0 239.0 7.0 334.0 9.0 5.0 5.0 36.0 10.0 0 0 0 0 0 0

MA0087.3_shift7 (Sox5)
; oligos_6nt_mkv3_m5 versus MA0087.3 (Sox5); m=16/32; ncol2=8; w=0; offset=4; strand=D; shift=7; score=0.435897; -------AACAATGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 104.0 122.0 0.0 120.0 114.0 6.0 20.0 13.0 0 0 c 0 0 0 0 0 0 0 4.0 0.0 120.0 2.0 5.0 3.0 0.0 14.0 0 0 g 0 0 0 0 0 0 0 12.0 1.0 2.0 2.0 4.0 1.0 101.0 90.0 0 0 t 0 0 0 0 0 0 0 4.0 1.0 2.0 0.0 1.0 114.0 3.0 7.0 0 0

MA1125.2_shift5 (ZNF384)
; oligos_6nt_mkv3_m5 versus MA1125.2 (ZNF384); m=17/32; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.43036; -----AAAAAAaa---- ; cor=; Ncor= a 0 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 0 0 0 c 0 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 0 0 0 g 0 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 0 0 0 t 0 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0 0 0 0

MA0047.4_shift3 (FOXA2)
; oligos_6nt_mkv3_m5 versus MA0047.4 (FOXA2); m=18/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.428007; ---wGTAAACA------ ; cor=; Ncor= a 0 0 0 93740.0 18770.0 3737.0 243805.0 223061.0 248214.0 2411.0 246665.0 0 0 0 0 0 0 c 0 0 0 12432.0 2928.0 2037.0 9424.0 22429.0 3329.0 196969.0 3086.0 0 0 0 0 0 0 g 0 0 0 38538.0 236311.0 1890.0 2641.0 6484.0 2805.0 3603.0 2984.0 0 0 0 0 0 0 t 0 0 0 117443.0 4144.0 254489.0 6283.0 10179.0 7805.0 59170.0 9418.0 0 0 0 0 0 0

MA0084.2_shift6 (SRY)
; oligos_6nt_mkv3_m5 versus MA0084.2 (SRY); m=19/32; ncol2=7; w=0; offset=3; strand=D; shift=6; score=0.426833; ------waACAAw---- ; cor=; Ncor= a 0 0 0 0 0 0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 0 0 c 0 0 0 0 0 0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 0 0 t 0 0 0 0 0 0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0 0 0

MA0442.3_shift8 (SOX10)
; oligos_6nt_mkv3_m5 versus MA0442.3 (SOX10); m=20/32; ncol2=6; w=0; offset=5; strand=D; shift=8; score=0.423558; --------ACAAAG--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 0 0 0 c 0 0 0 0 0 0 0 0 4.0 1989.0 7.0 28.0 23.0 13.0 0 0 0 g 0 0 0 0 0 0 0 0 3.0 11.0 7.0 20.0 12.0 2012.0 0 0 0 t 0 0 0 0 0 0 0 0 25.0 52.0 12.0 39.0 61.0 20.0 0 0 0

MA0768.3_rc_shift7 (Lef1_rc)
; oligos_6nt_mkv3_m5 versus MA0768.3_rc (Lef1_rc); m=21/32; ncol2=8; w=0; offset=4; strand=R; shift=7; score=0.418384; -------ATCAAAGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 872.0 41.0 51.0 1030.0 976.0 1036.0 45.0 90.0 0 0 c 0 0 0 0 0 0 0 51.0 25.0 882.0 15.0 39.0 14.0 21.0 130.0 0 0 g 0 0 0 0 0 0 0 28.0 28.0 75.0 18.0 47.0 19.0 989.0 788.0 0 0 t 0 0 0 0 0 0 0 130.0 987.0 73.0 18.0 19.0 12.0 26.0 73.0 0 0

MA1152.2_rc_shift8 (SOX15_rc)
; oligos_6nt_mkv3_m5 versus MA1152.2_rc (SOX15_rc); m=22/32; ncol2=7; w=0; offset=5; strand=R; shift=8; score=0.416936; --------ACAAwrr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 0 0 c 0 0 0 0 0 0 0 0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 0 0 g 0 0 0 0 0 0 0 0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 0 0 t 0 0 0 0 0 0 0 0 24.0 83.0 3.0 3.0 631.0 62.0 32.0 0 0

MA1606.2_shift4 (Foxf1)
; oligos_6nt_mkv3_m5 versus MA1606.2 (Foxf1); m=23/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.413816; ----rTAAACA------ ; cor=; Ncor= a 0 0 0 0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 0 0 0 0 0 0 c 0 0 0 0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 0 0 0 0 0 0 g 0 0 0 0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 0 0 0 0 0 0 t 0 0 0 0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 0 0 0 0 0 0

MA0850.1_shift4 (FOXP3)
; oligos_6nt_mkv3_m5 versus MA0850.1 (FOXP3); m=24/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.411593; ----rTAAACA------ ; cor=; Ncor= a 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 0 0 c 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 0 0 g 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 0 0 t 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0 0 0

MA0033.2_shift4 (FOXL1)
; oligos_6nt_mkv3_m5 versus MA0033.2 (FOXL1); m=25/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.40967; ----rTAAACA------ ; cor=; Ncor= a 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 0 0 c 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 0 0 g 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 0 0 t 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0 0 0

MA0480.3_shift4 (Foxo1)
; oligos_6nt_mkv3_m5 versus MA0480.3 (Foxo1); m=26/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.40839; ----GTAAACA------ ; cor=; Ncor= a 0 0 0 0 1411.0 945.0 12408.0 12663.0 12972.0 293.0 13332.0 0 0 0 0 0 0 c 0 0 0 0 481.0 555.0 934.0 849.0 387.0 12710.0 277.0 0 0 0 0 0 0 g 0 0 0 0 11670.0 1025.0 478.0 384.0 508.0 356.0 153.0 0 0 0 0 0 0 t 0 0 0 0 554.0 11591.0 296.0 220.0 249.0 757.0 354.0 0 0 0 0 0 0

MA0157.4_shift4 (Foxo3)
; oligos_6nt_mkv3_m5 versus MA0157.4 (Foxo3); m=27/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.408337; ----GTAAACA------ ; cor=; Ncor= a 0 0 0 0 3470.0 1546.0 22240.0 22288.0 22551.0 403.0 22141.0 0 0 0 0 0 0 c 0 0 0 0 590.0 435.0 968.0 803.0 483.0 21237.0 587.0 0 0 0 0 0 0 g 0 0 0 0 19202.0 1199.0 328.0 333.0 464.0 361.0 361.0 0 0 0 0 0 0 t 0 0 0 0 650.0 20732.0 376.0 488.0 414.0 1911.0 823.0 0 0 0 0 0 0

MA0868.3_shift7 (SOX8)
; oligos_6nt_mkv3_m5 versus MA0868.3 (SOX8); m=28/32; ncol2=7; w=0; offset=4; strand=D; shift=7; score=0.408124; -------AACAATr--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 0 0 0 c 0 0 0 0 0 0 0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 0 0 0 g 0 0 0 0 0 0 0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 0 0 0 t 0 0 0 0 0 0 0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 0 0 0

MA0852.3_shift4 (FOXK1)
; oligos_6nt_mkv3_m5 versus MA0852.3 (FOXK1); m=29/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.407792; ----GTAAACA------ ; cor=; Ncor= a 0 0 0 0 143.0 60.0 1003.0 999.0 1022.0 10.0 1015.0 0 0 0 0 0 0 c 0 0 0 0 28.0 5.0 37.0 37.0 13.0 958.0 16.0 0 0 0 0 0 0 g 0 0 0 0 868.0 44.0 10.0 11.0 10.0 12.0 12.0 0 0 0 0 0 0 t 0 0 0 0 17.0 947.0 6.0 9.0 11.0 76.0 13.0 0 0 0 0 0 0

MA1563.2_shift7 (SOX18)
; oligos_6nt_mkv3_m5 versus MA1563.2 (SOX18); m=30/32; ncol2=8; w=0; offset=4; strand=D; shift=7; score=0.405196; -------aACAATdv-- ; cor=; Ncor= a 0 0 0 0 0 0 0 424.0 424.0 0.0 424.0 424.0 0.0 203.0 382.0 0 0 c 0 0 0 0 0 0 0 81.0 0.0 424.0 0.0 35.0 0.0 0.0 551.0 0 0 g 0 0 0 0 0 0 0 170.0 0.0 91.0 0.0 17.0 0.0 221.0 424.0 0 0 t 0 0 0 0 0 0 0 34.0 0.0 2.0 0.0 0.0 447.0 228.0 0.0 0 0

MA0077.2_rc_shift7 (SOX9_rc)
; oligos_6nt_mkv3_m5 versus MA0077.2_rc (SOX9_rc); m=31/32; ncol2=8; w=0; offset=4; strand=R; shift=7; score=0.404877; -------AACAATrG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 54.0 59.0 0.0 65.0 71.0 4.0 24.0 9.0 0 0 c 0 0 0 0 0 0 0 6.0 4.0 72.0 4.0 2.0 0.0 6.0 9.0 0 0 g 0 0 0 0 0 0 0 7.0 0.0 2.0 0.0 1.0 1.0 38.0 55.0 0 0 t 0 0 0 0 0 0 0 9.0 13.0 2.0 7.0 2.0 71.0 8.0 3.0 0 0

MA0848.1_shift4 (FOXO4)
; oligos_6nt_mkv3_m5 versus MA0848.1 (FOXO4); m=32/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.404251; ----GTAAACA------ ; cor=; Ncor= a 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 0 0 c 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 0 0 g 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 0 0 t 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m5_shift3 (oligos_6nt_mkv3_m5)				; oligos_6nt_mkv3_m5; m=0 (reference); ncol1=14; shift=3; ncol=17; ---amaAAACAAAGcma ; Alignment reference a 0 0 0 265 218 421 586 628 671 13 688 646 649 124 171 263 273 c 0 0 0 119 225 95 25 34 9 643 10 30 16 62 335 187 152 g 0 0 0 178 148 95 24 29 28 32 8 25 24 492 127 139 151 t 0 0 0 155 126 106 82 26 9 29 11 16 28 39 84 128 141
MA0515.1_rc_shift5 (Sox6_rc)				; oligos_6nt_mkv3_m5 versus MA0515.1_rc (Sox6_rc); m=1/32; ncol2=10; w=0; offset=2; strand=R; shift=5; score=0.587115; -----rrrACAAwGg-- ; cor=; Ncor= a 0 0 0 0 0 128.0 133.0 129.0 249.0 0.0 249.0 249.0 88.0 28.0 56.0 0 0 c 0 0 0 0 0 31.0 0.0 5.0 0.0 249.0 0.0 0.0 0.0 0.0 50.0 0 0 g 0 0 0 0 0 76.0 112.0 115.0 0.0 0.0 0.0 0.0 0.0 221.0 139.0 0 0 t 0 0 0 0 0 14.0 4.0 0.0 0.0 0.0 0.0 0.0 161.0 0.0 4.0 0 0
MA0867.3_shift7 (SOX4)				; oligos_6nt_mkv3_m5 versus MA0867.3 (SOX4); m=2/32; ncol2=8; w=0; offset=4; strand=D; shift=7; score=0.536403; -------aACAAwGr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 0 0 c 0 0 0 0 0 0 0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 0 0 g 0 0 0 0 0 0 0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 0 0 t 0 0 0 0 0 0 0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0 0 0
MA0041.3_shift1 (FOXD3)				; oligos_6nt_mkv3_m5 versus MA0041.3 (FOXD3); m=3/32; ncol2=14; w=-2; offset=-2; strand=D; shift=1; score=0.526326; -wawrhAAAYAAACa-- ; cor=; Ncor= a 0 86.0 120.0 91.0 56.0 99.0 171.0 171.0 171.0 0.0 171.0 171.0 171.0 13.0 125.0 0 0 c 0 22.0 17.0 45.0 17.0 109.0 37.0 8.0 1.0 43.0 4.0 11.0 17.0 171.0 20.0 0 0 g 0 13.0 52.0 45.0 115.0 8.0 1.0 0.0 7.0 0.0 2.0 8.0 20.0 13.0 30.0 0 0 t 0 85.0 22.0 81.0 10.0 171.0 2.0 7.0 2.0 128.0 7.0 11.0 35.0 30.0 47.0 0 0
MA0851.2_shift4 (Foxj3)				; oligos_6nt_mkv3_m5 versus MA0851.2 (Foxj3); m=4/32; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.523643; ----RTAAACAAw---- ; cor=; Ncor= a 0 0 0 0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 0 0 0 0 c 0 0 0 0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 0 0 0 0 g 0 0 0 0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 0 0 0 0 t 0 0 0 0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 0 0 0 0
MA0078.3_shift5 (Sox17)				; oligos_6nt_mkv3_m5 versus MA0078.3 (Sox17); m=5/32; ncol2=10; w=0; offset=2; strand=D; shift=5; score=0.507936; -----agAACAATGG-- ; cor=; Ncor= a 0 0 0 0 0 7836.0 2720.0 8708.0 11818.0 271.0 11906.0 11634.0 1005.0 1324.0 1224.0 0 0 c 0 0 0 0 0 957.0 885.0 1111.0 124.0 11241.0 140.0 258.0 138.0 251.0 1012.0 0 0 g 0 0 0 0 0 1889.0 6638.0 1561.0 163.0 490.0 105.0 281.0 189.0 10241.0 9181.0 0 0 t 0 0 0 0 0 1605.0 2044.0 907.0 182.0 285.0 136.0 114.0 10955.0 471.0 870.0 0 0
MA0593.2_shift3 (FOXP2)				; oligos_6nt_mkv3_m5 versus MA0593.2 (FOXP2); m=6/32; ncol2=9; w=0; offset=0; strand=D; shift=3; score=0.503943; ---wGTAAACAr----- ; cor=; Ncor= a 0 0 0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 0 0 0 0 0 c 0 0 0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 0 0 0 0 0 g 0 0 0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 0 0 0 0 0 t 0 0 0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 0 0 0 0 0
MA0030.2_shift3 (FOXF2)				; oligos_6nt_mkv3_m5 versus MA0030.2 (FOXF2); m=7/32; ncol2=9; w=0; offset=0; strand=D; shift=3; score=0.503562; ---sRTAAACAa----- ; cor=; Ncor= a 0 0 0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 0 0 0 0 0 c 0 0 0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 0 0 0 0 0 g 0 0 0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 0 0 0 0 0 t 0 0 0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 0 0 0 0 0
MA0869.3_shift6 (Sox11)				; oligos_6nt_mkv3_m5 versus MA0869.3 (Sox11); m=8/32; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.494011; ------GAACAAAG--- ; cor=; Ncor= a 0 0 0 0 0 0 1014.0 7912.0 9856.0 119.0 10020.0 9676.0 9276.0 506.0 0 0 0 c 0 0 0 0 0 0 764.0 766.0 100.0 9471.0 108.0 264.0 61.0 148.0 0 0 0 g 0 0 0 0 0 0 8063.0 1298.0 211.0 501.0 49.0 248.0 233.0 9486.0 0 0 0 t 0 0 0 0 0 0 407.0 272.0 81.0 157.0 71.0 60.0 678.0 108.0 0 0 0
MA1603.2_shift7 (Dmrt1)				; oligos_6nt_mkv3_m5 versus MA1603.2 (Dmrt1); m=9/32; ncol2=9; w=0; offset=4; strand=D; shift=7; score=0.48193; -------tACAAWGTa- ; cor=; Ncor= a 0 0 0 0 0 0 0 3915.0 17933.0 211.0 17489.0 15568.0 12433.0 727.0 547.0 10367.0 0 c 0 0 0 0 0 0 0 1228.0 69.0 17633.0 110.0 482.0 205.0 185.0 161.0 1233.0 0 g 0 0 0 0 0 0 0 918.0 82.0 139.0 104.0 456.0 322.0 17032.0 200.0 2521.0 0 t 0 0 0 0 0 0 0 12234.0 211.0 312.0 592.0 1789.0 5335.0 351.0 17387.0 4174.0 0
MA0614.1_shift4 (Foxj2)				; oligos_6nt_mkv3_m5 versus MA0614.1 (Foxj2); m=10/32; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.472946; ----rTAAACAa----- ; cor=; Ncor= a 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 0 0 c 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 0 0 g 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 0 0 t 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0 0 0
MA1487.3_shift0 (FOXE1)				; oligos_6nt_mkv3_m5 versus MA1487.3 (FOXE1); m=11/32; ncol2=12; w=-3; offset=-3; strand=D; shift=0; score=0.464897; yTAARyAAACAa----- ; cor=; Ncor= a 86.0 581.0 3126.0 2547.0 2255.0 587.0 3126.0 3126.0 3126.0 0.0 3126.0 2026.0 0 0 0 0 0 c 1646.0 43.0 28.0 113.0 117.0 1062.0 362.0 90.0 0.0 3126.0 32.0 392.0 0 0 0 0 0 g 57.0 0.0 402.0 116.0 871.0 17.0 0.0 0.0 23.0 0.0 18.0 258.0 0 0 0 0 0 t 1479.0 2545.0 43.0 579.0 27.0 2064.0 20.0 53.0 9.0 85.0 110.0 450.0 0 0 0 0 0
MA1489.1_shift4 (FOXN3)				; oligos_6nt_mkv3_m5 versus MA1489.1 (FOXN3); m=12/32; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.463516; ----GTAAACAA----- ; cor=; Ncor= a 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 0 0 c 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 0 0 g 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 0 t 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 0
MA0613.1_shift4 (FOXG1)				; oligos_6nt_mkv3_m5 versus MA0613.1 (FOXG1); m=13/32; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.457121; ----rTAAACAw----- ; cor=; Ncor= a 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 0 0 c 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 0 0 g 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 0 0 t 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0 0 0
MA0846.2_shift1 (FOXC2)				; oligos_6nt_mkv3_m5 versus MA0846.2 (FOXC2); m=14/32; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.452657; -wAwrTAAAYAw----- ; cor=; Ncor= a 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 0 0 0 0 0 c 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 0 0 0 0 0 g 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 0 0 0 0 0 t 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 0 0 0 0 0
MA2118.1_shift3 (FOXS1)				; oligos_6nt_mkv3_m5 versus MA2118.1 (FOXS1); m=15/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.442981; ---tGTAAACA------ ; cor=; Ncor= a 0 0 0 66.0 36.0 13.0 345.0 345.0 361.0 9.0 356.0 0 0 0 0 0 0 c 0 0 0 20.0 8.0 15.0 15.0 16.0 3.0 322.0 5.0 0 0 0 0 0 0 g 0 0 0 49.0 323.0 12.0 5.0 8.0 5.0 7.0 3.0 0 0 0 0 0 0 t 0 0 0 239.0 7.0 334.0 9.0 5.0 5.0 36.0 10.0 0 0 0 0 0 0
MA0087.3_shift7 (Sox5)				; oligos_6nt_mkv3_m5 versus MA0087.3 (Sox5); m=16/32; ncol2=8; w=0; offset=4; strand=D; shift=7; score=0.435897; -------AACAATGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 104.0 122.0 0.0 120.0 114.0 6.0 20.0 13.0 0 0 c 0 0 0 0 0 0 0 4.0 0.0 120.0 2.0 5.0 3.0 0.0 14.0 0 0 g 0 0 0 0 0 0 0 12.0 1.0 2.0 2.0 4.0 1.0 101.0 90.0 0 0 t 0 0 0 0 0 0 0 4.0 1.0 2.0 0.0 1.0 114.0 3.0 7.0 0 0
MA1125.2_shift5 (ZNF384)				; oligos_6nt_mkv3_m5 versus MA1125.2 (ZNF384); m=17/32; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.43036; -----AAAAAAaa---- ; cor=; Ncor= a 0 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 0 0 0 c 0 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 0 0 0 g 0 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 0 0 0 t 0 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0 0 0 0
MA0047.4_shift3 (FOXA2)				; oligos_6nt_mkv3_m5 versus MA0047.4 (FOXA2); m=18/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.428007; ---wGTAAACA------ ; cor=; Ncor= a 0 0 0 93740.0 18770.0 3737.0 243805.0 223061.0 248214.0 2411.0 246665.0 0 0 0 0 0 0 c 0 0 0 12432.0 2928.0 2037.0 9424.0 22429.0 3329.0 196969.0 3086.0 0 0 0 0 0 0 g 0 0 0 38538.0 236311.0 1890.0 2641.0 6484.0 2805.0 3603.0 2984.0 0 0 0 0 0 0 t 0 0 0 117443.0 4144.0 254489.0 6283.0 10179.0 7805.0 59170.0 9418.0 0 0 0 0 0 0
MA0084.2_shift6 (SRY)				; oligos_6nt_mkv3_m5 versus MA0084.2 (SRY); m=19/32; ncol2=7; w=0; offset=3; strand=D; shift=6; score=0.426833; ------waACAAw---- ; cor=; Ncor= a 0 0 0 0 0 0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 0 0 c 0 0 0 0 0 0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 0 0 t 0 0 0 0 0 0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0 0 0
MA0442.3_shift8 (SOX10)				; oligos_6nt_mkv3_m5 versus MA0442.3 (SOX10); m=20/32; ncol2=6; w=0; offset=5; strand=D; shift=8; score=0.423558; --------ACAAAG--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 0 0 0 c 0 0 0 0 0 0 0 0 4.0 1989.0 7.0 28.0 23.0 13.0 0 0 0 g 0 0 0 0 0 0 0 0 3.0 11.0 7.0 20.0 12.0 2012.0 0 0 0 t 0 0 0 0 0 0 0 0 25.0 52.0 12.0 39.0 61.0 20.0 0 0 0
MA0768.3_rc_shift7 (Lef1_rc)				; oligos_6nt_mkv3_m5 versus MA0768.3_rc (Lef1_rc); m=21/32; ncol2=8; w=0; offset=4; strand=R; shift=7; score=0.418384; -------ATCAAAGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 872.0 41.0 51.0 1030.0 976.0 1036.0 45.0 90.0 0 0 c 0 0 0 0 0 0 0 51.0 25.0 882.0 15.0 39.0 14.0 21.0 130.0 0 0 g 0 0 0 0 0 0 0 28.0 28.0 75.0 18.0 47.0 19.0 989.0 788.0 0 0 t 0 0 0 0 0 0 0 130.0 987.0 73.0 18.0 19.0 12.0 26.0 73.0 0 0
MA1152.2_rc_shift8 (SOX15_rc)				; oligos_6nt_mkv3_m5 versus MA1152.2_rc (SOX15_rc); m=22/32; ncol2=7; w=0; offset=5; strand=R; shift=8; score=0.416936; --------ACAAwrr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 0 0 c 0 0 0 0 0 0 0 0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 0 0 g 0 0 0 0 0 0 0 0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 0 0 t 0 0 0 0 0 0 0 0 24.0 83.0 3.0 3.0 631.0 62.0 32.0 0 0
MA1606.2_shift4 (Foxf1)				; oligos_6nt_mkv3_m5 versus MA1606.2 (Foxf1); m=23/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.413816; ----rTAAACA------ ; cor=; Ncor= a 0 0 0 0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 0 0 0 0 0 0 c 0 0 0 0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 0 0 0 0 0 0 g 0 0 0 0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 0 0 0 0 0 0 t 0 0 0 0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 0 0 0 0 0 0
MA0850.1_shift4 (FOXP3)				; oligos_6nt_mkv3_m5 versus MA0850.1 (FOXP3); m=24/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.411593; ----rTAAACA------ ; cor=; Ncor= a 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 0 0 c 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 0 0 g 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 0 0 t 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0 0 0
MA0033.2_shift4 (FOXL1)				; oligos_6nt_mkv3_m5 versus MA0033.2 (FOXL1); m=25/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.40967; ----rTAAACA------ ; cor=; Ncor= a 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 0 0 c 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 0 0 g 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 0 0 t 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0 0 0
MA0480.3_shift4 (Foxo1)				; oligos_6nt_mkv3_m5 versus MA0480.3 (Foxo1); m=26/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.40839; ----GTAAACA------ ; cor=; Ncor= a 0 0 0 0 1411.0 945.0 12408.0 12663.0 12972.0 293.0 13332.0 0 0 0 0 0 0 c 0 0 0 0 481.0 555.0 934.0 849.0 387.0 12710.0 277.0 0 0 0 0 0 0 g 0 0 0 0 11670.0 1025.0 478.0 384.0 508.0 356.0 153.0 0 0 0 0 0 0 t 0 0 0 0 554.0 11591.0 296.0 220.0 249.0 757.0 354.0 0 0 0 0 0 0
MA0157.4_shift4 (Foxo3)				; oligos_6nt_mkv3_m5 versus MA0157.4 (Foxo3); m=27/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.408337; ----GTAAACA------ ; cor=; Ncor= a 0 0 0 0 3470.0 1546.0 22240.0 22288.0 22551.0 403.0 22141.0 0 0 0 0 0 0 c 0 0 0 0 590.0 435.0 968.0 803.0 483.0 21237.0 587.0 0 0 0 0 0 0 g 0 0 0 0 19202.0 1199.0 328.0 333.0 464.0 361.0 361.0 0 0 0 0 0 0 t 0 0 0 0 650.0 20732.0 376.0 488.0 414.0 1911.0 823.0 0 0 0 0 0 0
MA0868.3_shift7 (SOX8)				; oligos_6nt_mkv3_m5 versus MA0868.3 (SOX8); m=28/32; ncol2=7; w=0; offset=4; strand=D; shift=7; score=0.408124; -------AACAATr--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 0 0 0 c 0 0 0 0 0 0 0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 0 0 0 g 0 0 0 0 0 0 0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 0 0 0 t 0 0 0 0 0 0 0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 0 0 0
MA0852.3_shift4 (FOXK1)				; oligos_6nt_mkv3_m5 versus MA0852.3 (FOXK1); m=29/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.407792; ----GTAAACA------ ; cor=; Ncor= a 0 0 0 0 143.0 60.0 1003.0 999.0 1022.0 10.0 1015.0 0 0 0 0 0 0 c 0 0 0 0 28.0 5.0 37.0 37.0 13.0 958.0 16.0 0 0 0 0 0 0 g 0 0 0 0 868.0 44.0 10.0 11.0 10.0 12.0 12.0 0 0 0 0 0 0 t 0 0 0 0 17.0 947.0 6.0 9.0 11.0 76.0 13.0 0 0 0 0 0 0
MA1563.2_shift7 (SOX18)				; oligos_6nt_mkv3_m5 versus MA1563.2 (SOX18); m=30/32; ncol2=8; w=0; offset=4; strand=D; shift=7; score=0.405196; -------aACAATdv-- ; cor=; Ncor= a 0 0 0 0 0 0 0 424.0 424.0 0.0 424.0 424.0 0.0 203.0 382.0 0 0 c 0 0 0 0 0 0 0 81.0 0.0 424.0 0.0 35.0 0.0 0.0 551.0 0 0 g 0 0 0 0 0 0 0 170.0 0.0 91.0 0.0 17.0 0.0 221.0 424.0 0 0 t 0 0 0 0 0 0 0 34.0 0.0 2.0 0.0 0.0 447.0 228.0 0.0 0 0
MA0077.2_rc_shift7 (SOX9_rc)				; oligos_6nt_mkv3_m5 versus MA0077.2_rc (SOX9_rc); m=31/32; ncol2=8; w=0; offset=4; strand=R; shift=7; score=0.404877; -------AACAATrG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 54.0 59.0 0.0 65.0 71.0 4.0 24.0 9.0 0 0 c 0 0 0 0 0 0 0 6.0 4.0 72.0 4.0 2.0 0.0 6.0 9.0 0 0 g 0 0 0 0 0 0 0 7.0 0.0 2.0 0.0 1.0 1.0 38.0 55.0 0 0 t 0 0 0 0 0 0 0 9.0 13.0 2.0 7.0 2.0 71.0 8.0 3.0 0 0
MA0848.1_shift4 (FOXO4)				; oligos_6nt_mkv3_m5 versus MA0848.1 (FOXO4); m=32/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.404251; ----GTAAACA------ ; cor=; Ncor= a 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 0 0 c 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 0 0 g 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 0 0 t 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0 0 0