One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2026/03/04/peak-motifs.2026-03-04.105925_2026-03-04.105925_GBNx32/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m2_shift1 ; 33 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m2_shift1 (oligos_6nt_mkv3_m2)
; oligos_6nt_mkv3_m2; m=0 (reference); ncol1=13; shift=1; ncol=14; -ccCCCCACCCCcc ; Alignment reference a 0 238 226 62 65 35 22 821 29 28 29 113 220 281 c 0 512 445 912 984 1089 1100 109 1080 1067 1076 895 515 438 g 0 228 269 95 80 43 44 171 55 65 49 94 241 255 t 0 217 255 126 66 28 29 94 31 35 41 93 219 221

MA1961.2_rc_shift2 (PATZ1_rc)
; oligos_6nt_mkv3_m2 versus MA1961.2_rc (PATZ1_rc); m=1/32; ncol2=11; w=0; offset=1; strand=R; shift=2; score=0.77688; --sCCCCkCCCCs- ; cor=; Ncor= a 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 0 c 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 0 g 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 0 t 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0 0

MA0599.1_shift2 (KLF5)
; oligos_6nt_mkv3_m2 versus MA0599.1 (KLF5); m=2/32; ncol2=10; w=0; offset=1; strand=D; shift=2; score=0.705471; --gCCMCrCCCh-- ; cor=; Ncor= a 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0

MA1630.3_rc_shift3 (ZNF281_rc)
; oligos_6nt_mkv3_m2 versus MA1630.3_rc (ZNF281_rc); m=3/32; ncol2=10; w=0; offset=2; strand=R; shift=3; score=0.679062; ---CCCCTCCCCC- ; cor=; Ncor= a 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 1.0 0 c 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 998.0 0 g 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 1.0 0 t 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0 1.0 0

MA0741.1_shift2 (KLF16)
; oligos_6nt_mkv3_m2 versus MA0741.1 (KLF16); m=4/32; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.677043; --gmCMCgCCCMC- ; cor=; Ncor= a 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 c 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 g 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 t 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0

MA1653.2_shift3 (ZNF148)
; oligos_6nt_mkv3_m2 versus MA1653.2 (ZNF148); m=5/32; ncol2=10; w=0; offset=2; strand=D; shift=3; score=0.66793; ---CCCCTCCCcc- ; cor=; Ncor= a 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0

MA0753.3_shift4 (ZNF740)
; oligos_6nt_mkv3_m2 versus MA0753.3 (ZNF740); m=6/32; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.634215; ----CCCCCCCCAc ; cor=; Ncor= a 0 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 c 0 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 g 0 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 t 0 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0

MA1511.2_rc_shift3 (KLF10_rc)
; oligos_6nt_mkv3_m2 versus MA1511.2_rc (KLF10_rc); m=7/32; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.628584; ---CCMCGCCCC-- ; cor=; Ncor= a 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 c 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 g 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 t 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0

MA0747.2_shift3 (SP8)
; oligos_6nt_mkv3_m2 versus MA0747.2 (SP8); m=8/32; ncol2=11; w=0; offset=2; strand=D; shift=3; score=0.621375; ---mCACgCCCmCy ; cor=; Ncor= a 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 c 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 g 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 t 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0

MA0079.5_rc_shift3 (SP1_rc)
; oligos_6nt_mkv3_m2 versus MA0079.5_rc (SP1_rc); m=9/32; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.620024; ---CyCCKCCCC-- ; cor=; Ncor= a 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 c 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 g 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 t 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0

MA1107.3_shift2 (KLF9)
; oligos_6nt_mkv3_m2 versus MA1107.3 (KLF9); m=10/32; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.619103; --gCCACACCCAC- ; cor=; Ncor= a 0 0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 0 c 0 0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 0 g 0 0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 0 t 0 0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 0

MA0746.3_shift2 (SP3)
; oligos_6nt_mkv3_m2 versus MA0746.3 (SP3); m=11/32; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.617164; --rCCACGCCCmC- ; cor=; Ncor= a 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 0 c 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 0 g 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 0 t 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 0

MA0685.2_rc_shift3 (SP4_rc)
; oligos_6nt_mkv3_m2 versus MA0685.2_rc (SP4_rc); m=12/32; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.614877; ---CyCCKCCCc-- ; cor=; Ncor= a 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0

MA0740.2_rc_shift3 (KLF14_rc)
; oligos_6nt_mkv3_m2 versus MA0740.2_rc (KLF14_rc); m=13/32; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.612055; ---CCMCGCCCm-- ; cor=; Ncor= a 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 c 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 g 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 t 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0

MA0039.5_shift3 (KLF4)
; oligos_6nt_mkv3_m2 versus MA0039.5 (KLF4); m=14/32; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.610711; ---CCCCACCC--- ; cor=; Ncor= a 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 c 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 g 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 t 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0

MA0516.3_rc_shift3 (SP2_rc)
; oligos_6nt_mkv3_m2 versus MA0516.3_rc (SP2_rc); m=15/32; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.607618; ---cCCCGCCCC-- ; cor=; Ncor= a 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 c 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 g 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 t 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0

MA0742.2_rc_shift3 (KLF12_rc)
; oligos_6nt_mkv3_m2 versus MA0742.2_rc (KLF12_rc); m=16/32; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.601209; ---CCCCGCCCC-- ; cor=; Ncor= a 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 c 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 g 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 t 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0

MA1564.2_shift3 (SP9)
; oligos_6nt_mkv3_m2 versus MA1564.2 (SP9); m=17/32; ncol2=10; w=0; offset=2; strand=D; shift=3; score=0.593622; ---cCmCGCCCmc- ; cor=; Ncor= a 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 c 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 g 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 t 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0

MA0493.3_rc_shift3 (KLF1_rc)
; oligos_6nt_mkv3_m2 versus MA0493.3_rc (KLF1_rc); m=18/32; ncol2=8; w=0; offset=2; strand=R; shift=3; score=0.578834; ---CCmCrCCC--- ; cor=; Ncor= a 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0

MA1512.2_shift3 (KLF11)
; oligos_6nt_mkv3_m2 versus MA1512.2 (KLF11); m=19/32; ncol2=10; w=0; offset=2; strand=D; shift=3; score=0.568288; ---cCACGCCCmC- ; cor=; Ncor= a 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 c 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 g 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 t 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0

MA2328.1_shift4 (ZBED4)
; oligos_6nt_mkv3_m2 versus MA2328.1 (ZBED4); m=20/32; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.552248; ----CcCGCyCCGC ; cor=; Ncor= a 0 0 0 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 c 0 0 0 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 g 0 0 0 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 t 0 0 0 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0

MA1959.2_rc_shift3 (KLF7_rc)
; oligos_6nt_mkv3_m2 versus MA1959.2_rc (KLF7_rc); m=21/32; ncol2=8; w=0; offset=2; strand=R; shift=3; score=0.548682; ---CcMCGCCC--- ; cor=; Ncor= a 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0

MA0162.5_shift1 (EGR1)
; oligos_6nt_mkv3_m2 versus MA0162.5 (EGR1); m=22/32; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.539139; -mCGCCCACgC--- ; cor=; Ncor= a 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 0 0 c 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 0 0 g 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 0 0 t 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0 0 0

MA1515.2_shift3 (KLF2)
; oligos_6nt_mkv3_m2 versus MA1515.2 (KLF2); m=23/32; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.531781; ---CCmCrCCC--- ; cor=; Ncor= a 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 c 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 g 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 t 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0

MA1513.2_shift3 (KLF15)
; oligos_6nt_mkv3_m2 versus MA1513.2 (KLF15); m=24/32; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.529545; ---cCCCGCCC--- ; cor=; Ncor= a 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0

MA1517.2_shift5 (KLF6)
; oligos_6nt_mkv3_m2 versus MA1517.2 (KLF6); m=25/32; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.516442; -----cCACRCCCm ; cor=; Ncor= a 0 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 c 0 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 g 0 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 t 0 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0

MA1522.2_shift3 (MAZ)
; oligos_6nt_mkv3_m2 versus MA1522.2 (MAZ); m=26/32; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.514798; ---CCCCTCCc--- ; cor=; Ncor= a 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0

MA1627.2_shift5 (Wt1)
; oligos_6nt_mkv3_m2 versus MA1627.2 (Wt1); m=27/32; ncol2=10; w=0; offset=4; strand=D; shift=5; score=0.491748; -----cCTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 c 0 0 0 0 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 g 0 0 0 0 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 t 0 0 0 0 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0

MA1715.1_shift3 (ZNF707)
; oligos_6nt_mkv3_m2 versus MA1715.1 (ZNF707); m=28/32; ncol2=15; w=0; offset=2; strand=D; shift=3; score=0.454953; ---CCCCACTYCTG ; cor=; Ncor= a 0 0 0 37.0 37.0 12.0 41.0 1109.0 9.0 5.0 4.0 12.0 17.0 42.0 c 0 0 0 960.0 1057.0 1109.0 1044.0 5.0 1111.0 11.0 821.0 1079.0 83.0 15.0 g 0 0 0 34.0 31.0 9.0 8.0 17.0 5.0 2.0 11.0 9.0 5.0 1033.0 t 0 0 0 126.0 32.0 27.0 64.0 26.0 32.0 1139.0 321.0 57.0 1052.0 67.0

MA0695.2_shift2 (ZBTB7C)
; oligos_6nt_mkv3_m2 versus MA0695.2 (ZBTB7C); m=29/32; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.446589; --cgACCACC---- ; cor=; Ncor= a 0 0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 0 0 0 0 c 0 0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 0 0 0 0 g 0 0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 0 0 0 0 t 0 0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 0 0 0 0

MA0471.3_rc_shift2 (E2F6_rc)
; oligos_6nt_mkv3_m2 versus MA0471.3_rc (E2F6_rc); m=30/32; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.433958; --TTCCCGCC---- ; cor=; Ncor= a 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 0 c 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 0 g 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 0 t 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0 0

MA1578.2_shift1 (VEZF1)
; oligos_6nt_mkv3_m2 versus MA1578.2 (VEZF1); m=31/32; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.422571; -CCCCCC------- ; cor=; Ncor= a 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 0 0 0 0 c 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 0 0 0 0 g 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0 0 0 0 t 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0 0 0 0 0

MA0056.3_shift0 (MZF1)
; oligos_6nt_mkv3_m2 versus MA0056.3 (MZF1); m=32/32; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.400118; AATCCCCA------ ; cor=; Ncor= a 5855.0 7149.0 106.0 100.0 135.0 111.0 117.0 6036.0 0 0 0 0 0 0 c 1016.0 426.0 56.0 7949.0 7939.0 7919.0 7673.0 611.0 0 0 0 0 0 0 g 999.0 385.0 98.0 100.0 54.0 58.0 83.0 484.0 0 0 0 0 0 0 t 372.0 282.0 7982.0 93.0 114.0 154.0 369.0 1111.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m3_shift0 ; 12 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m3_shift0 (oligos_6nt_mkv3_m3)
; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=21; shift=0; ncol=21; yhcaTTTGCATaAcAAwgsmm ; Alignment reference a 141 209 180 501 47 82 96 99 42 766 25 519 544 55 658 688 459 195 178 270 218 c 223 205 311 89 38 104 22 40 726 12 29 59 32 501 49 31 39 58 219 216 233 g 189 146 126 96 24 45 8 633 9 5 13 123 28 148 24 43 42 485 306 181 169 t 237 230 173 104 681 559 664 18 13 7 723 89 186 86 59 28 250 52 87 123 170

MA1962.1_shift2 (POU2F1::SOX2)
; oligos_6nt_mkv3_m3 versus MA1962.1 (POU2F1::SOX2); m=1/11; ncol2=17; w=0; offset=2; strand=D; shift=2; score=0.754789; --mATTWrCATmACAAWrg-- ; cor=; Ncor= a 0 0 7886.0 15701.0 553.0 1136.0 5710.0 5841.0 1656.0 15595.0 32.0 7899.0 16152.0 376.0 16231.0 16210.0 5996.0 7139.0 2147.0 0 0 c 0 0 4993.0 528.0 216.0 552.0 471.0 812.0 15582.0 113.0 154.0 5483.0 518.0 15839.0 175.0 133.0 340.0 636.0 3768.0 0 0 g 0 0 2541.0 434.0 22.0 53.0 65.0 10408.0 70.0 501.0 49.0 2557.0 158.0 683.0 89.0 61.0 87.0 7984.0 8916.0 0 0 t 0 0 825.0 1325.0 16133.0 16109.0 14381.0 25.0 141.0 35.0 16010.0 306.0 629.0 2079.0 372.0 127.0 13866.0 1558.0 1414.0 0 0

MA0142.1_rc_shift3 (Pou5f1::Sox2_rc)
; oligos_6nt_mkv3_m3 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=2/11; ncol2=15; w=0; offset=3; strand=R; shift=3; score=0.705446; ---aTtTGCATrwsAAwr--- ; cor=; Ncor= a 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 0 c 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 0 g 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 0 t 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0 0

MA0507.3_rc_shift0 (POU2F2_rc)
; oligos_6nt_mkv3_m3 versus MA0507.3_rc (POU2F2_rc); m=3/11; ncol2=13; w=0; offset=0; strand=R; shift=0; score=0.566316; cTmATTTGCATAw-------- ; cor=; Ncor= a 788.0 1065.0 5505.0 9207.0 8.0 57.0 1929.0 1193.0 111.0 9207.0 0.0 9207.0 3315.0 0 0 0 0 0 0 0 0 c 5392.0 851.0 3703.0 35.0 0.0 23.0 0.0 127.0 9207.0 2.0 0.0 4.0 2020.0 0 0 0 0 0 0 0 0 g 1301.0 648.0 862.0 8.0 5.0 7.0 0.0 8014.0 0.0 13.0 0.0 100.0 435.0 0 0 0 0 0 0 0 0 t 1726.0 6644.0 1399.0 56.0 9207.0 9207.0 7279.0 2.0 0.0 0.0 9207.0 34.0 5892.0 0 0 0 0 0 0 0 0

MA0784.3_shift0 (POU1F1)
; oligos_6nt_mkv3_m3 versus MA0784.3 (POU1F1); m=4/11; ncol2=14; w=0; offset=0; strand=D; shift=0; score=0.56559; CTmATTwGCATAwt------- ; cor=; Ncor= a 131.0 106.0 2281.0 4127.0 0.0 91.0 1564.0 419.0 54.0 4127.0 3.0 4127.0 2323.0 849.0 0 0 0 0 0 0 0 c 3623.0 126.0 1846.0 7.0 0.0 13.0 0.0 67.0 4127.0 9.0 3.0 5.0 165.0 702.0 0 0 0 0 0 0 0 g 372.0 220.0 192.0 28.0 1.0 2.0 0.0 3708.0 1.0 5.0 0.0 5.0 57.0 384.0 0 0 0 0 0 0 0 t 504.0 3907.0 262.0 31.0 4127.0 4127.0 2563.0 16.0 3.0 17.0 4127.0 59.0 1804.0 3278.0 0 0 0 0 0 0 0

MA0788.1_rc_shift1 (POU3F3_rc)
; oligos_6nt_mkv3_m3 versus MA0788.1_rc (POU3F3_rc); m=5/11; ncol2=13; w=0; offset=1; strand=R; shift=1; score=0.530106; -waATTwGCATAww------- ; cor=; Ncor= a 0 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 0 0 0 0 0 0 0 c 0 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 0 0 0 0 0 0 0 g 0 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 0 0 0 0 0 0 0 t 0 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0 0 0 0 0 0 0 0

MA0787.1_rc_shift1 (POU3F2_rc)
; oligos_6nt_mkv3_m3 versus MA0787.1_rc (POU3F2_rc); m=6/11; ncol2=12; w=0; offset=1; strand=R; shift=1; score=0.527342; -tmATTwGCATAw-------- ; cor=; Ncor= a 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 0 0 0 0 0 0 0 c 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 0 0 0 0 0 0 0 g 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 0 0 0 0 0 0 0 t 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0 0 0 0 0 0 0 0

MA0786.2_rc_shift3 (POU3F1_rc)
; oligos_6nt_mkv3_m3 versus MA0786.2_rc (POU3F1_rc); m=7/11; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.453924; ---ATTwrCATAw-------- ; cor=; Ncor= a 0 0 0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 0 0 c 0 0 0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 0 0 g 0 0 0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 0 0 t 0 0 0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0 0 0

MA0627.3_rc_shift3 (POU2F3_rc)
; oligos_6nt_mkv3_m3 versus MA0627.3_rc (POU2F3_rc); m=8/11; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.424627; ---ATTTGCATa--------- ; cor=; Ncor= a 0 0 0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 0 0 0 0 0 0 0 0 0 c 0 0 0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 0 0 0 0 0 0 0 0 0 g 0 0 0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 0 0 0 0 0 0 0 0 0 t 0 0 0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 0 0 0 0 0 0 0 0 0

MA0785.2_rc_shift3 (POU2F1_rc)
; oligos_6nt_mkv3_m3 versus MA0785.2_rc (POU2F1_rc); m=9/11; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.416793; ---ATTwgCATA--------- ; cor=; Ncor= a 0 0 0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 0 0 0 0 0 0 0 0 0 c 0 0 0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 0 0 0 0 0 0 0 0 0 g 0 0 0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 0 0 0 0 0 0 0 0 0 t 0 0 0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 0 0 0 0 0 0 0 0 0

MA0792.1_rc_shift3 (POU5F1B_rc)
; oligos_6nt_mkv3_m3 versus MA0792.1_rc (POU5F1B_rc); m=10/11; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.416653; ---ATTwrCATA--------- ; cor=; Ncor= a 0 0 0 9519.0 203.0 896.0 3220.0 3828.0 1790.0 9519.0 84.0 9519.0 0 0 0 0 0 0 0 0 0 c 0 0 0 750.0 97.0 856.0 65.0 1293.0 9519.0 206.0 67.0 808.0 0 0 0 0 0 0 0 0 0 g 0 0 0 537.0 65.0 144.0 51.0 9519.0 94.0 364.0 21.0 1778.0 0 0 0 0 0 0 0 0 0 t 0 0 0 1559.0 9519.0 9519.0 6299.0 398.0 322.0 171.0 9519.0 1326.0 0 0 0 0 0 0 0 0 0

MA0789.1_rc_shift3 (POU3F4_rc)
; oligos_6nt_mkv3_m3 versus MA0789.1_rc (POU3F4_rc); m=11/11; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.412927; ---ATTwGCATA--------- ; cor=; Ncor= a 0 0 0 11117.0 168.0 885.0 4670.0 2565.0 245.0 11117.0 26.0 11117.0 0 0 0 0 0 0 0 0 0 c 0 0 0 292.0 88.0 315.0 56.0 602.0 11117.0 24.0 68.0 136.0 0 0 0 0 0 0 0 0 0 g 0 0 0 247.0 47.0 332.0 10.0 11117.0 19.0 59.0 23.0 349.0 0 0 0 0 0 0 0 0 0 t 0 0 0 705.0 11117.0 11117.0 6447.0 136.0 53.0 59.0 11117.0 941.0 0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m4_shift5 ; 43 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m4_shift5 (oligos_6nt_mkv3_m4)
; oligos_6nt_mkv3_m4; m=0 (reference); ncol1=11; shift=5; ncol=16; -----atTTACATAws ; Alignment reference a 0 0 0 0 0 460 228 61 32 921 63 1109 80 1031 380 286 c 0 0 0 0 0 212 227 61 41 41 1038 34 77 47 227 324 g 0 0 0 0 0 267 182 29 23 187 29 15 56 43 199 301 t 0 0 0 0 0 257 559 1045 1100 47 66 38 983 75 390 285

MA0786.2_rc_shift5 (POU3F1_rc)
; oligos_6nt_mkv3_m4 versus MA0786.2_rc (POU3F1_rc); m=1/42; ncol2=10; w=0; offset=0; strand=R; shift=5; score=0.750678; -----ATTwrCATAw- ; cor=; Ncor= a 0 0 0 0 0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 c 0 0 0 0 0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 g 0 0 0 0 0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 t 0 0 0 0 0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0

MA0843.2_shift6 (TEF)
; oligos_6nt_mkv3_m4 versus MA0843.2 (TEF); m=2/42; ncol2=10; w=0; offset=1; strand=D; shift=6; score=0.717234; ------rTTACrTAAy ; cor=; Ncor= a 0 0 0 0 0 0 1971.0 90.0 107.0 3601.0 17.0 1324.0 0.0 3601.0 3601.0 0.0 c 0 0 0 0 0 0 372.0 18.0 0.0 0.0 3601.0 0.0 133.0 76.0 0.0 2120.0 g 0 0 0 0 0 0 1630.0 5.0 31.0 108.0 0.0 2277.0 43.0 11.0 19.0 269.0 t 0 0 0 0 0 0 8.0 3601.0 3601.0 0.0 446.0 0.0 3601.0 161.0 10.0 1481.0

MA0025.3_rc_shift6 (NFIL3_rc)
; oligos_6nt_mkv3_m4 versus MA0025.3_rc (NFIL3_rc); m=3/42; ncol2=9; w=0; offset=1; strand=R; shift=6; score=0.713015; ------aTTrCATAA- ; cor=; Ncor= a 0 0 0 0 0 0 13143.0 474.0 434.0 9180.0 610.0 20334.0 433.0 20606.0 20927.0 0 c 0 0 0 0 0 0 2701.0 360.0 171.0 454.0 20459.0 492.0 990.0 1714.0 518.0 0 g 0 0 0 0 0 0 4959.0 251.0 543.0 12004.0 467.0 1511.0 220.0 208.0 681.0 0 t 0 0 0 0 0 0 2193.0 21911.0 21848.0 1358.0 1460.0 659.0 21353.0 468.0 870.0 0

MA0639.2_shift6 (DBP)
; oligos_6nt_mkv3_m4 versus MA0639.2 (DBP); m=4/42; ncol2=10; w=0; offset=1; strand=D; shift=6; score=0.695648; ------rTTAYRTAAy ; cor=; Ncor= a 0 0 0 0 0 0 3706.0 5.0 4.0 7100.0 2.0 3180.0 3.0 7100.0 7100.0 158.0 c 0 0 0 0 0 0 1130.0 4.0 6.0 0.0 7100.0 17.0 541.0 288.0 1.0 3707.0 g 0 0 0 0 0 0 3393.0 2.0 602.0 498.0 21.0 7100.0 7.0 7.0 2.0 1543.0 t 0 0 0 0 0 0 93.0 7100.0 7100.0 4.0 2664.0 1.0 7100.0 6.0 2.0 3393.0

MA0792.1_rc_shift5 (POU5F1B_rc)
; oligos_6nt_mkv3_m4 versus MA0792.1_rc (POU5F1B_rc); m=5/42; ncol2=9; w=0; offset=0; strand=R; shift=5; score=0.683103; -----ATTwrCATA-- ; cor=; Ncor= a 0 0 0 0 0 9519.0 203.0 896.0 3220.0 3828.0 1790.0 9519.0 84.0 9519.0 0 0 c 0 0 0 0 0 750.0 97.0 856.0 65.0 1293.0 9519.0 206.0 67.0 808.0 0 0 g 0 0 0 0 0 537.0 65.0 144.0 51.0 9519.0 94.0 364.0 21.0 1778.0 0 0 t 0 0 0 0 0 1559.0 9519.0 9519.0 6299.0 398.0 322.0 171.0 9519.0 1326.0 0 0

MA0043.4_rc_shift6 (HLF_rc)
; oligos_6nt_mkv3_m4 versus MA0043.4_rc (HLF_rc); m=6/42; ncol2=9; w=0; offset=1; strand=R; shift=6; score=0.683063; ------rTTRCATAA- ; cor=; Ncor= a 0 0 0 0 0 0 6488.0 113.0 98.0 6653.0 189.0 22426.0 209.0 23271.0 23739.0 0 c 0 0 0 0 0 0 3300.0 189.0 48.0 199.0 21705.0 253.0 1344.0 895.0 148.0 0 g 0 0 0 0 0 0 13237.0 67.0 122.0 17203.0 112.0 1548.0 125.0 96.0 242.0 0 t 0 0 0 0 0 0 1399.0 24055.0 24156.0 369.0 2418.0 197.0 22746.0 162.0 295.0 0

MA0785.2_rc_shift5 (POU2F1_rc)
; oligos_6nt_mkv3_m4 versus MA0785.2_rc (POU2F1_rc); m=7/42; ncol2=9; w=0; offset=0; strand=R; shift=5; score= 0.6803; -----ATTwgCATA-- ; cor=; Ncor= a 0 0 0 0 0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 0 0 c 0 0 0 0 0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 0 0 g 0 0 0 0 0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 0 0 t 0 0 0 0 0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 0 0

MA0627.3_rc_shift5 (POU2F3_rc)
; oligos_6nt_mkv3_m4 versus MA0627.3_rc (POU2F3_rc); m=8/42; ncol2=9; w=0; offset=0; strand=R; shift=5; score= 0.6697; -----ATTTGCATa-- ; cor=; Ncor= a 0 0 0 0 0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 0 0 c 0 0 0 0 0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 0 0 g 0 0 0 0 0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 0 0 t 0 0 0 0 0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 0 0

MA0789.1_rc_shift5 (POU3F4_rc)
; oligos_6nt_mkv3_m4 versus MA0789.1_rc (POU3F4_rc); m=9/42; ncol2=9; w=0; offset=0; strand=R; shift=5; score=0.663355; -----ATTwGCATA-- ; cor=; Ncor= a 0 0 0 0 0 11117.0 168.0 885.0 4670.0 2565.0 245.0 11117.0 26.0 11117.0 0 0 c 0 0 0 0 0 292.0 88.0 315.0 56.0 602.0 11117.0 24.0 68.0 136.0 0 0 g 0 0 0 0 0 247.0 47.0 332.0 10.0 11117.0 19.0 59.0 23.0 349.0 0 0 t 0 0 0 0 0 705.0 11117.0 11117.0 6447.0 136.0 53.0 59.0 11117.0 941.0 0 0

MA0788.1_rc_shift3 (POU3F3_rc)
; oligos_6nt_mkv3_m4 versus MA0788.1_rc (POU3F3_rc); m=10/42; ncol2=13; w=-2; offset=-2; strand=R; shift=3; score=0.652146; ---waATTwGCATAww ; cor=; Ncor= a 0 0 0 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 c 0 0 0 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 g 0 0 0 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 t 0 0 0 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0

MA1607.2_rc_shift4 (Foxl2_rc)
; oligos_6nt_mkv3_m4 versus MA1607.2_rc (Foxl2_rc); m=11/42; ncol2=10; w=-1; offset=-1; strand=R; shift=4; score=0.624262; ----TGTTTACAtw-- ; cor=; Ncor= a 0 0 0 0 1270.0 1970.0 328.0 366.0 204.0 16284.0 479.0 12849.0 2785.0 8493.0 0 0 c 0 0 0 0 401.0 151.0 411.0 187.0 112.0 419.0 14648.0 1371.0 2107.0 1599.0 0 0 g 0 0 0 0 807.0 15698.0 216.0 336.0 558.0 301.0 367.0 896.0 2051.0 1576.0 0 0 t 0 0 0 0 15623.0 282.0 17146.0 17212.0 17227.0 1097.0 2607.0 2985.0 11158.0 6433.0 0 0

MA0787.1_rc_shift3 (POU3F2_rc)
; oligos_6nt_mkv3_m4 versus MA0787.1_rc (POU3F2_rc); m=12/42; ncol2=12; w=-2; offset=-2; strand=R; shift=3; score=0.617632; ---tmATTwGCATAw- ; cor=; Ncor= a 0 0 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 c 0 0 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 g 0 0 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 t 0 0 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0

MA0784.3_shift2 (POU1F1)
; oligos_6nt_mkv3_m4 versus MA0784.3 (POU1F1); m=13/42; ncol2=14; w=-3; offset=-3; strand=D; shift=2; score=0.613957; --CTmATTwGCATAwt ; cor=; Ncor= a 0 0 131.0 106.0 2281.0 4127.0 0.0 91.0 1564.0 419.0 54.0 4127.0 3.0 4127.0 2323.0 849.0 c 0 0 3623.0 126.0 1846.0 7.0 0.0 13.0 0.0 67.0 4127.0 9.0 3.0 5.0 165.0 702.0 g 0 0 372.0 220.0 192.0 28.0 1.0 2.0 0.0 3708.0 1.0 5.0 0.0 5.0 57.0 384.0 t 0 0 504.0 3907.0 262.0 31.0 4127.0 4127.0 2563.0 16.0 3.0 17.0 4127.0 59.0 1804.0 3278.0

MA0845.1_rc_shift3 (FOXB1_rc)
; oligos_6nt_mkv3_m4 versus MA0845.1_rc (FOXB1_rc); m=14/42; ncol2=11; w=-2; offset=-2; strand=R; shift=3; score=0.603075; ---aTrTTKACwTw-- ; cor=; Ncor= a 0 0 0 4008.0 147.0 4589.0 216.0 381.0 73.0 6841.0 124.0 4858.0 561.0 4448.0 0 0 c 0 0 0 556.0 157.0 104.0 47.0 0.0 75.0 113.0 6841.0 409.0 1498.0 190.0 0 0 g 0 0 0 573.0 0.0 2252.0 47.0 213.0 1950.0 240.0 54.0 218.0 263.0 272.0 0 0 t 0 0 0 1704.0 6841.0 28.0 6841.0 6841.0 4891.0 180.0 1159.0 1983.0 5343.0 2393.0 0 0

MA0507.3_rc_shift2 (POU2F2_rc)
; oligos_6nt_mkv3_m4 versus MA0507.3_rc (POU2F2_rc); m=15/42; ncol2=13; w=-3; offset=-3; strand=R; shift=2; score=0.590279; --cTmATTTGCATAw- ; cor=; Ncor= a 0 0 788.0 1065.0 5505.0 9207.0 8.0 57.0 1929.0 1193.0 111.0 9207.0 0.0 9207.0 3315.0 0 c 0 0 5392.0 851.0 3703.0 35.0 0.0 23.0 0.0 127.0 9207.0 2.0 0.0 4.0 2020.0 0 g 0 0 1301.0 648.0 862.0 8.0 5.0 7.0 0.0 8014.0 0.0 13.0 0.0 100.0 435.0 0 t 0 0 1726.0 6644.0 1399.0 56.0 9207.0 9207.0 7279.0 2.0 0.0 0.0 9207.0 34.0 5892.0 0

MA0032.2_rc_shift3 (FOXC1_rc)
; oligos_6nt_mkv3_m4 versus MA0032.2_rc (FOXC1_rc); m=16/42; ncol2=11; w=-2; offset=-2; strand=R; shift=3; score=0.572848; ---wTrTTKAYwTw-- ; cor=; Ncor= a 0 0 0 11787.0 184.0 9708.0 112.0 57.0 45.0 18489.0 51.0 10596.0 1386.0 12038.0 0 0 c 0 0 0 1107.0 433.0 165.0 141.0 0.0 21.0 390.0 13631.0 2422.0 4165.0 304.0 0 0 g 0 0 0 1558.0 27.0 8782.0 56.0 108.0 5372.0 1652.0 336.0 2008.0 728.0 772.0 0 0 t 0 0 0 6702.0 18489.0 122.0 18489.0 18489.0 13117.0 2496.0 4858.0 7893.0 14324.0 6452.0 0 0

MA0142.1_rc_shift5 (Pou5f1::Sox2_rc)
; oligos_6nt_mkv3_m4 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=17/42; ncol2=15; w=0; offset=0; strand=R; shift=5; score=0.563336; -----aTtTGCATrws ; cor=; Ncor= a 0 0 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 c 0 0 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 g 0 0 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 t 0 0 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0

MA1115.2_rc_shift6 (POU5F1_rc)
; oligos_6nt_mkv3_m4 versus MA1115.2_rc (POU5F1_rc); m=18/42; ncol2=7; w=0; offset=1; strand=R; shift=6; score=0.536457; ------TTTGCAT--- ; cor=; Ncor= a 0 0 0 0 0 0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 0 0 0 c 0 0 0 0 0 0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 0 0 0 g 0 0 0 0 0 0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 0 0 0 t 0 0 0 0 0 0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 0 0 0

MA0846.2_rc_shift3 (FOXC2_rc)
; oligos_6nt_mkv3_m4 versus MA0846.2_rc (FOXC2_rc); m=19/42; ncol2=11; w=-2; offset=-2; strand=R; shift=3; score=0.529306; ---wTRTTTAywTw-- ; cor=; Ncor= a 0 0 0 7160.0 215.0 6021.0 242.0 107.0 122.0 20456.0 136.0 9155.0 2080.0 11517.0 0 0 c 0 0 0 1710.0 328.0 68.0 279.0 81.0 87.0 321.0 14038.0 3129.0 5093.0 454.0 0 0 g 0 0 0 2087.0 101.0 14435.0 105.0 344.0 6759.0 3773.0 440.0 3476.0 1652.0 1279.0 0 0 t 0 0 0 13296.0 20456.0 31.0 20456.0 20456.0 20456.0 2005.0 6418.0 11301.0 20456.0 8939.0 0 0

MA0606.3_rc_shift5 (Nfat5_rc)
; oligos_6nt_mkv3_m4 versus MA0606.3_rc (Nfat5_rc); m=20/42; ncol2=8; w=0; offset=0; strand=R; shift=5; score=0.515715; -----TTTTCCAT--- ; cor=; Ncor= a 0 0 0 0 0 14.0 10.0 9.0 5.0 7.0 11.0 302.0 13.0 0 0 0 c 0 0 0 0 0 19.0 8.0 10.0 15.0 325.0 332.0 9.0 47.0 0 0 0 g 0 0 0 0 0 8.0 4.0 1.0 8.0 8.0 0.0 10.0 17.0 0 0 0 t 0 0 0 0 0 315.0 334.0 336.0 328.0 16.0 13.0 35.0 279.0 0 0 0

MA2118.1_rc_shift4 (FOXS1_rc)
; oligos_6nt_mkv3_m4 versus MA2118.1_rc (FOXS1_rc); m=21/42; ncol2=8; w=-1; offset=-1; strand=R; shift=4; score=0.493878; ----TGTTTACa---- ; cor=; Ncor= a 0 0 0 0 10.0 36.0 5.0 5.0 9.0 334.0 7.0 239.0 0 0 0 0 c 0 0 0 0 3.0 7.0 5.0 8.0 5.0 12.0 323.0 49.0 0 0 0 0 g 0 0 0 0 5.0 322.0 3.0 16.0 15.0 15.0 8.0 20.0 0 0 0 0 t 0 0 0 0 356.0 9.0 361.0 345.0 345.0 13.0 36.0 66.0 0 0 0 0

MA1962.1_shift4 (POU2F1::SOX2)
; oligos_6nt_mkv3_m4 versus MA1962.1 (POU2F1::SOX2); m=22/42; ncol2=17; w=-1; offset=-1; strand=D; shift=4; score=0.488669; ----mATTWrCATmAC ; cor=; Ncor= a 0 0 0 0 7886.0 15701.0 553.0 1136.0 5710.0 5841.0 1656.0 15595.0 32.0 7899.0 16152.0 376.0 c 0 0 0 0 4993.0 528.0 216.0 552.0 471.0 812.0 15582.0 113.0 154.0 5483.0 518.0 15839.0 g 0 0 0 0 2541.0 434.0 22.0 53.0 65.0 10408.0 70.0 501.0 49.0 2557.0 158.0 683.0 t 0 0 0 0 825.0 1325.0 16133.0 16109.0 14381.0 25.0 141.0 35.0 16010.0 306.0 629.0 2079.0

MA0047.4_rc_shift4 (FOXA2_rc)
; oligos_6nt_mkv3_m4 versus MA0047.4_rc (FOXA2_rc); m=23/42; ncol2=8; w=-1; offset=-1; strand=R; shift=4; score=0.482869; ----TGTTTACw---- ; cor=; Ncor= a 0 0 0 0 9418.0 59170.0 7805.0 10179.0 6283.0 254489.0 4144.0 117443.0 0 0 0 0 c 0 0 0 0 2984.0 3603.0 2805.0 6484.0 2641.0 1890.0 236311.0 38538.0 0 0 0 0 g 0 0 0 0 3086.0 196969.0 3329.0 22429.0 9424.0 2037.0 2928.0 12432.0 0 0 0 0 t 0 0 0 0 246665.0 2411.0 248214.0 223061.0 243805.0 3737.0 18770.0 93740.0 0 0 0 0

MA0042.2_rc_shift4 (FOXI1_rc)
; oligos_6nt_mkv3_m4 versus MA0042.2_rc (FOXI1_rc); m=24/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.435922; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 0.0 810.0 66.0 0.0 0.0 5175.0 0.0 0 0 0 0 0 c 0 0 0 0 25.0 48.0 29.0 0.0 37.0 35.0 5175.0 0 0 0 0 0 g 0 0 0 0 12.0 5175.0 23.0 23.0 540.0 60.0 39.0 0 0 0 0 0 t 0 0 0 0 5175.0 157.0 5175.0 5175.0 5175.0 74.0 618.0 0 0 0 0 0

MA1683.2_rc_shift4 (FOXA3_rc)
; oligos_6nt_mkv3_m4 versus MA1683.2_rc (FOXA3_rc); m=25/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.434997; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 1838.0 7272.0 984.0 978.0 1143.0 46586.0 2596.0 0 0 0 0 0 c 0 0 0 0 614.0 1205.0 934.0 977.0 636.0 690.0 40396.0 0 0 0 0 0 g 0 0 0 0 933.0 39509.0 973.0 3883.0 1980.0 903.0 1464.0 0 0 0 0 0 t 0 0 0 0 45552.0 951.0 46046.0 43099.0 45178.0 758.0 4481.0 0 0 0 0 0

MA0031.2_rc_shift4 (FOXD1_rc)
; oligos_6nt_mkv3_m4 versus MA0031.2_rc (FOXD1_rc); m=26/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.433755; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 0.0 1.0 0.0 0.0 0.0 20.0 1.0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 1.0 0.0 0.0 0.0 17.0 0 0 0 0 0 g 0 0 0 0 0.0 18.0 1.0 0.0 1.0 0.0 1.0 0 0 0 0 0 t 0 0 0 0 20.0 1.0 18.0 20.0 19.0 0.0 1.0 0 0 0 0 0

MA0019.2_rc_shift3 (Ddit3::Cebpa_rc)
; oligos_6nt_mkv3_m4 versus MA0019.2_rc (Ddit3::Cebpa_rc); m=27/42; ncol2=10; w=-2; offset=-2; strand=R; shift=3; score=0.433034; ---ggkATTGCAy--- ; cor=; Ncor= a 0 0 0 7.0 3.0 3.0 33.0 0.0 0.0 2.0 1.0 38.0 3.0 0 0 0 c 0 0 0 6.0 9.0 5.0 0.0 1.0 0.0 0.0 38.0 0.0 15.0 0 0 0 g 0 0 0 26.0 23.0 17.0 6.0 2.0 1.0 33.0 0.0 1.0 3.0 0 0 0 t 0 0 0 0.0 4.0 14.0 0.0 36.0 38.0 4.0 0.0 0.0 18.0 0 0 0

MA0481.4_rc_shift4 (FOXP1_rc)
; oligos_6nt_mkv3_m4 versus MA0481.4_rc (FOXP1_rc); m=28/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.432427; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 3609.0 10795.0 2069.0 2585.0 1947.0 71862.0 3111.0 0 0 0 0 0 c 0 0 0 0 749.0 1493.0 1132.0 1830.0 1073.0 920.0 59571.0 0 0 0 0 0 g 0 0 0 0 1904.0 61094.0 1487.0 5067.0 2095.0 727.0 1573.0 0 0 0 0 0 t 0 0 0 0 68456.0 1336.0 70030.0 65236.0 69603.0 1209.0 10463.0 0 0 0 0 0

MA2117.1_rc_shift4 (FOXP4_rc)
; oligos_6nt_mkv3_m4 versus MA2117.1_rc (FOXP4_rc); m=29/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.427493; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 776.0 2446.0 418.0 356.0 466.0 19792.0 1294.0 0 0 0 0 0 c 0 0 0 0 218.0 493.0 550.0 368.0 534.0 539.0 17315.0 0 0 0 0 0 g 0 0 0 0 443.0 18349.0 419.0 1330.0 1545.0 793.0 834.0 0 0 0 0 0 t 0 0 0 0 20230.0 379.0 20280.0 19613.0 19122.0 543.0 2224.0 0 0 0 0 0

MA0850.1_rc_shift4 (FOXP3_rc)
; oligos_6nt_mkv3_m4 versus MA0850.1_rc (FOXP3_rc); m=30/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.427139; ----TGTTTAy----- ; cor=; Ncor= a 0 0 0 0 0.0 39.0 0.0 8.0 31.0 211.0 0.0 0 0 0 0 0 c 0 0 0 0 18.0 32.0 49.0 9.0 0.0 0.0 137.0 0 0 0 0 0 g 0 0 0 0 0.0 211.0 15.0 0.0 0.0 52.0 0.0 0 0 0 0 0 t 0 0 0 0 211.0 0.0 211.0 211.0 211.0 20.0 74.0 0 0 0 0 0

MA1103.3_rc_shift4 (FOXK2_rc)
; oligos_6nt_mkv3_m4 versus MA1103.3_rc (FOXK2_rc); m=31/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.425366; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 505.0 1472.0 365.0 565.0 341.0 15782.0 694.0 0 0 0 0 0 c 0 0 0 0 170.0 426.0 391.0 436.0 148.0 327.0 12737.0 0 0 0 0 0 g 0 0 0 0 295.0 14282.0 330.0 1291.0 277.0 210.0 551.0 0 0 0 0 0 t 0 0 0 0 15709.0 499.0 15593.0 14387.0 15913.0 360.0 2697.0 0 0 0 0 0

MA0157.4_rc_shift4 (Foxo3_rc)
; oligos_6nt_mkv3_m4 versus MA0157.4_rc (Foxo3_rc); m=32/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.424008; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 823.0 1911.0 414.0 488.0 376.0 20732.0 650.0 0 0 0 0 0 c 0 0 0 0 361.0 361.0 464.0 333.0 328.0 1199.0 19202.0 0 0 0 0 0 g 0 0 0 0 587.0 21237.0 483.0 803.0 968.0 435.0 590.0 0 0 0 0 0 t 0 0 0 0 22141.0 403.0 22551.0 22288.0 22240.0 1546.0 3470.0 0 0 0 0 0

MA0852.3_rc_shift4 (FOXK1_rc)
; oligos_6nt_mkv3_m4 versus MA0852.3_rc (FOXK1_rc); m=33/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.42372; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 13.0 76.0 11.0 9.0 6.0 947.0 17.0 0 0 0 0 0 c 0 0 0 0 12.0 12.0 10.0 11.0 10.0 44.0 868.0 0 0 0 0 0 g 0 0 0 0 16.0 958.0 13.0 37.0 37.0 5.0 28.0 0 0 0 0 0 t 0 0 0 0 1015.0 10.0 1022.0 999.0 1003.0 60.0 143.0 0 0 0 0 0

MA0480.3_rc_shift4 (Foxo1_rc)
; oligos_6nt_mkv3_m4 versus MA0480.3_rc (Foxo1_rc); m=34/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.419173; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 354.0 757.0 249.0 220.0 296.0 11591.0 554.0 0 0 0 0 0 c 0 0 0 0 153.0 356.0 508.0 384.0 478.0 1025.0 11670.0 0 0 0 0 0 g 0 0 0 0 277.0 12710.0 387.0 849.0 934.0 555.0 481.0 0 0 0 0 0 t 0 0 0 0 13332.0 293.0 12972.0 12663.0 12408.0 945.0 1411.0 0 0 0 0 0

MA0848.1_rc_shift4 (FOXO4_rc)
; oligos_6nt_mkv3_m4 versus MA0848.1_rc (FOXO4_rc); m=35/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.416778; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 40.0 958.0 10.0 20.0 20.0 5378.0 0.0 0 0 0 0 0 c 0 0 0 0 10.0 33.0 90.0 19.0 32.0 123.0 5378.0 0 0 0 0 0 g 0 0 0 0 10.0 5378.0 0.0 146.0 1259.0 69.0 13.0 0 0 0 0 0 t 0 0 0 0 5378.0 58.0 5378.0 5378.0 5378.0 345.0 1669.0 0 0 0 0 0

MA0849.1_rc_shift4 (FOXO6_rc)
; oligos_6nt_mkv3_m4 versus MA0849.1_rc (FOXO6_rc); m=36/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.414193; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 0.0 385.0 0.0 26.0 0.0 7025.0 0.0 0 0 0 0 0 c 0 0 0 0 13.0 31.0 0.0 0.0 7.0 32.0 7025.0 0 0 0 0 0 g 0 0 0 0 0.0 7025.0 0.0 195.0 1147.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 7025.0 0.0 7025.0 7025.0 7025.0 154.0 1445.0 0 0 0 0 0

MA0033.2_rc_shift4 (FOXL1_rc)
; oligos_6nt_mkv3_m4 versus MA0033.2_rc (FOXL1_rc); m=37/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.40833; ----TGTTTAy----- ; cor=; Ncor= a 0 0 0 0 17.0 1057.0 0.0 15.0 0.0 4780.0 140.0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 50.0 0.0 57.0 0.0 2678.0 0 0 0 0 0 g 0 0 0 0 54.0 3723.0 82.0 38.0 628.0 416.0 13.0 0 0 0 0 0 t 0 0 0 0 4780.0 0.0 4780.0 4780.0 4780.0 10.0 2102.0 0 0 0 0 0

MA0624.3_rc_shift6 (Nfatc1_rc)
; oligos_6nt_mkv3_m4 versus MA0624.3_rc (Nfatc1_rc); m=38/42; ncol2=6; w=0; offset=1; strand=R; shift=6; score=0.406508; ------TTTCCA---- ; cor=; Ncor= a 0 0 0 0 0 0 124.0 39.0 54.0 55.0 17.0 5771.0 0 0 0 0 c 0 0 0 0 0 0 43.0 32.0 27.0 6058.0 6106.0 65.0 0 0 0 0 g 0 0 0 0 0 0 77.0 13.0 30.0 16.0 13.0 227.0 0 0 0 0 t 0 0 0 0 0 0 5947.0 6107.0 6080.0 62.0 55.0 128.0 0 0 0 0

MA0593.2_rc_shift3 (FOXP2_rc)
; oligos_6nt_mkv3_m4 versus MA0593.2_rc (FOXP2_rc); m=39/42; ncol2=9; w=-2; offset=-2; strand=R; shift=3; score=0.404358; ---yTGTTTACw---- ; cor=; Ncor= a 0 0 0 22.0 0.0 9.0 0.0 0.0 0.0 707.0 0.0 277.0 0 0 0 0 c 0 0 0 293.0 0.0 0.0 0.0 0.0 0.0 0.0 606.0 142.0 0 0 0 0 g 0 0 0 154.0 0.0 757.0 0.0 0.0 0.0 0.0 0.0 7.0 0 0 0 0 t 0 0 0 297.0 766.0 0.0 766.0 766.0 766.0 59.0 160.0 340.0 0 0 0 0

MA0041.3_rc_shift0 (FOXD3_rc)
; oligos_6nt_mkv3_m4 versus MA0041.3_rc (FOXD3_rc); m=40/42; ncol2=14; w=-5; offset=-5; strand=R; shift=0; score=0.403346; tGTTTRTTTdywtw-- ; cor=; Ncor= a 47.0 30.0 35.0 11.0 7.0 128.0 2.0 7.0 2.0 171.0 10.0 81.0 22.0 85.0 0 0 c 30.0 13.0 20.0 8.0 2.0 0.0 7.0 0.0 1.0 8.0 115.0 45.0 52.0 13.0 0 0 g 20.0 171.0 17.0 11.0 4.0 43.0 1.0 8.0 37.0 109.0 17.0 45.0 17.0 22.0 0 0 t 125.0 13.0 171.0 171.0 171.0 0.0 171.0 171.0 171.0 99.0 56.0 91.0 120.0 86.0 0 0

MA1478.2_shift6 (DMRTA2)
; oligos_6nt_mkv3_m4 versus MA1478.2 (DMRTA2); m=41/42; ncol2=6; w=0; offset=1; strand=D; shift=6; score=0.402882; ------GwTACA---- ; cor=; Ncor= a 0 0 0 0 0 0 0.0 727.0 578.0 1710.0 0.0 1710.0 0 0 0 0 c 0 0 0 0 0 0 1.0 527.0 147.0 9.0 1710.0 23.0 0 0 0 0 g 0 0 0 0 0 0 1710.0 10.0 29.0 71.0 0.0 78.0 0 0 0 0 t 0 0 0 0 0 0 6.0 983.0 1710.0 13.0 3.0 261.0 0 0 0 0

MA1606.2_rc_shift4 (Foxf1_rc)
; oligos_6nt_mkv3_m4 versus MA1606.2_rc (Foxf1_rc); m=42/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.401446; ----TGTTTAy----- ; cor=; Ncor= a 0 0 0 0 1916.0 4187.0 831.0 2538.0 903.0 57368.0 3653.0 0 0 0 0 0 c 0 0 0 0 443.0 522.0 1067.0 811.0 445.0 1158.0 33599.0 0 0 0 0 0 g 0 0 0 0 745.0 54394.0 475.0 2249.0 899.0 446.0 3754.0 0 0 0 0 0 t 0 0 0 0 56436.0 437.0 57167.0 53942.0 57293.0 568.0 18534.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m5_shift3 ; 33 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m5_shift3 (oligos_6nt_mkv3_m5)
; oligos_6nt_mkv3_m5; m=0 (reference); ncol1=14; shift=3; ncol=17; ---amaAAACAAAGcma ; Alignment reference a 0 0 0 265 218 421 586 628 671 13 688 646 649 124 171 263 273 c 0 0 0 119 225 95 25 34 9 643 10 30 16 62 335 187 152 g 0 0 0 178 148 95 24 29 28 32 8 25 24 492 127 139 151 t 0 0 0 155 126 106 82 26 9 29 11 16 28 39 84 128 141

MA0515.1_rc_shift5 (Sox6_rc)
; oligos_6nt_mkv3_m5 versus MA0515.1_rc (Sox6_rc); m=1/32; ncol2=10; w=0; offset=2; strand=R; shift=5; score=0.587115; -----rrrACAAwGg-- ; cor=; Ncor= a 0 0 0 0 0 128.0 133.0 129.0 249.0 0.0 249.0 249.0 88.0 28.0 56.0 0 0 c 0 0 0 0 0 31.0 0.0 5.0 0.0 249.0 0.0 0.0 0.0 0.0 50.0 0 0 g 0 0 0 0 0 76.0 112.0 115.0 0.0 0.0 0.0 0.0 0.0 221.0 139.0 0 0 t 0 0 0 0 0 14.0 4.0 0.0 0.0 0.0 0.0 0.0 161.0 0.0 4.0 0 0

MA0867.3_shift7 (SOX4)
; oligos_6nt_mkv3_m5 versus MA0867.3 (SOX4); m=2/32; ncol2=8; w=0; offset=4; strand=D; shift=7; score=0.536403; -------aACAAwGr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 0 0 c 0 0 0 0 0 0 0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 0 0 g 0 0 0 0 0 0 0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 0 0 t 0 0 0 0 0 0 0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0 0 0

MA0041.3_shift1 (FOXD3)
; oligos_6nt_mkv3_m5 versus MA0041.3 (FOXD3); m=3/32; ncol2=14; w=-2; offset=-2; strand=D; shift=1; score=0.526326; -wawrhAAAYAAACa-- ; cor=; Ncor= a 0 86.0 120.0 91.0 56.0 99.0 171.0 171.0 171.0 0.0 171.0 171.0 171.0 13.0 125.0 0 0 c 0 22.0 17.0 45.0 17.0 109.0 37.0 8.0 1.0 43.0 4.0 11.0 17.0 171.0 20.0 0 0 g 0 13.0 52.0 45.0 115.0 8.0 1.0 0.0 7.0 0.0 2.0 8.0 20.0 13.0 30.0 0 0 t 0 85.0 22.0 81.0 10.0 171.0 2.0 7.0 2.0 128.0 7.0 11.0 35.0 30.0 47.0 0 0

MA0851.2_shift4 (Foxj3)
; oligos_6nt_mkv3_m5 versus MA0851.2 (Foxj3); m=4/32; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.523643; ----RTAAACAAw---- ; cor=; Ncor= a 0 0 0 0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 0 0 0 0 c 0 0 0 0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 0 0 0 0 g 0 0 0 0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 0 0 0 0 t 0 0 0 0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 0 0 0 0

MA0078.3_shift5 (Sox17)
; oligos_6nt_mkv3_m5 versus MA0078.3 (Sox17); m=5/32; ncol2=10; w=0; offset=2; strand=D; shift=5; score=0.507936; -----agAACAATGG-- ; cor=; Ncor= a 0 0 0 0 0 7836.0 2720.0 8708.0 11818.0 271.0 11906.0 11634.0 1005.0 1324.0 1224.0 0 0 c 0 0 0 0 0 957.0 885.0 1111.0 124.0 11241.0 140.0 258.0 138.0 251.0 1012.0 0 0 g 0 0 0 0 0 1889.0 6638.0 1561.0 163.0 490.0 105.0 281.0 189.0 10241.0 9181.0 0 0 t 0 0 0 0 0 1605.0 2044.0 907.0 182.0 285.0 136.0 114.0 10955.0 471.0 870.0 0 0

MA0593.2_shift3 (FOXP2)
; oligos_6nt_mkv3_m5 versus MA0593.2 (FOXP2); m=6/32; ncol2=9; w=0; offset=0; strand=D; shift=3; score=0.503943; ---wGTAAACAr----- ; cor=; Ncor= a 0 0 0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 0 0 0 0 0 c 0 0 0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 0 0 0 0 0 g 0 0 0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 0 0 0 0 0 t 0 0 0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 0 0 0 0 0

MA0030.2_shift3 (FOXF2)
; oligos_6nt_mkv3_m5 versus MA0030.2 (FOXF2); m=7/32; ncol2=9; w=0; offset=0; strand=D; shift=3; score=0.503562; ---sRTAAACAa----- ; cor=; Ncor= a 0 0 0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 0 0 0 0 0 c 0 0 0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 0 0 0 0 0 g 0 0 0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 0 0 0 0 0 t 0 0 0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 0 0 0 0 0

MA0869.3_shift6 (Sox11)
; oligos_6nt_mkv3_m5 versus MA0869.3 (Sox11); m=8/32; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.494011; ------GAACAAAG--- ; cor=; Ncor= a 0 0 0 0 0 0 1014.0 7912.0 9856.0 119.0 10020.0 9676.0 9276.0 506.0 0 0 0 c 0 0 0 0 0 0 764.0 766.0 100.0 9471.0 108.0 264.0 61.0 148.0 0 0 0 g 0 0 0 0 0 0 8063.0 1298.0 211.0 501.0 49.0 248.0 233.0 9486.0 0 0 0 t 0 0 0 0 0 0 407.0 272.0 81.0 157.0 71.0 60.0 678.0 108.0 0 0 0

MA1603.2_shift7 (Dmrt1)
; oligos_6nt_mkv3_m5 versus MA1603.2 (Dmrt1); m=9/32; ncol2=9; w=0; offset=4; strand=D; shift=7; score=0.48193; -------tACAAWGTa- ; cor=; Ncor= a 0 0 0 0 0 0 0 3915.0 17933.0 211.0 17489.0 15568.0 12433.0 727.0 547.0 10367.0 0 c 0 0 0 0 0 0 0 1228.0 69.0 17633.0 110.0 482.0 205.0 185.0 161.0 1233.0 0 g 0 0 0 0 0 0 0 918.0 82.0 139.0 104.0 456.0 322.0 17032.0 200.0 2521.0 0 t 0 0 0 0 0 0 0 12234.0 211.0 312.0 592.0 1789.0 5335.0 351.0 17387.0 4174.0 0

MA0614.1_shift4 (Foxj2)
; oligos_6nt_mkv3_m5 versus MA0614.1 (Foxj2); m=10/32; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.472946; ----rTAAACAa----- ; cor=; Ncor= a 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 0 0 c 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 0 0 g 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 0 0 t 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0 0 0

MA1487.3_shift0 (FOXE1)
; oligos_6nt_mkv3_m5 versus MA1487.3 (FOXE1); m=11/32; ncol2=12; w=-3; offset=-3; strand=D; shift=0; score=0.464897; yTAARyAAACAa----- ; cor=; Ncor= a 86.0 581.0 3126.0 2547.0 2255.0 587.0 3126.0 3126.0 3126.0 0.0 3126.0 2026.0 0 0 0 0 0 c 1646.0 43.0 28.0 113.0 117.0 1062.0 362.0 90.0 0.0 3126.0 32.0 392.0 0 0 0 0 0 g 57.0 0.0 402.0 116.0 871.0 17.0 0.0 0.0 23.0 0.0 18.0 258.0 0 0 0 0 0 t 1479.0 2545.0 43.0 579.0 27.0 2064.0 20.0 53.0 9.0 85.0 110.0 450.0 0 0 0 0 0

MA1489.1_shift4 (FOXN3)
; oligos_6nt_mkv3_m5 versus MA1489.1 (FOXN3); m=12/32; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.463516; ----GTAAACAA----- ; cor=; Ncor= a 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 0 0 c 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 0 0 g 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 0 t 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 0

MA0613.1_shift4 (FOXG1)
; oligos_6nt_mkv3_m5 versus MA0613.1 (FOXG1); m=13/32; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.457121; ----rTAAACAw----- ; cor=; Ncor= a 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 0 0 c 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 0 0 g 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 0 0 t 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0 0 0

MA0846.2_shift1 (FOXC2)
; oligos_6nt_mkv3_m5 versus MA0846.2 (FOXC2); m=14/32; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.452657; -wAwrTAAAYAw----- ; cor=; Ncor= a 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 0 0 0 0 0 c 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 0 0 0 0 0 g 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 0 0 0 0 0 t 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 0 0 0 0 0

MA2118.1_shift3 (FOXS1)
; oligos_6nt_mkv3_m5 versus MA2118.1 (FOXS1); m=15/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.442981; ---tGTAAACA------ ; cor=; Ncor= a 0 0 0 66.0 36.0 13.0 345.0 345.0 361.0 9.0 356.0 0 0 0 0 0 0 c 0 0 0 20.0 8.0 15.0 15.0 16.0 3.0 322.0 5.0 0 0 0 0 0 0 g 0 0 0 49.0 323.0 12.0 5.0 8.0 5.0 7.0 3.0 0 0 0 0 0 0 t 0 0 0 239.0 7.0 334.0 9.0 5.0 5.0 36.0 10.0 0 0 0 0 0 0

MA0087.3_shift7 (Sox5)
; oligos_6nt_mkv3_m5 versus MA0087.3 (Sox5); m=16/32; ncol2=8; w=0; offset=4; strand=D; shift=7; score=0.435897; -------AACAATGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 104.0 122.0 0.0 120.0 114.0 6.0 20.0 13.0 0 0 c 0 0 0 0 0 0 0 4.0 0.0 120.0 2.0 5.0 3.0 0.0 14.0 0 0 g 0 0 0 0 0 0 0 12.0 1.0 2.0 2.0 4.0 1.0 101.0 90.0 0 0 t 0 0 0 0 0 0 0 4.0 1.0 2.0 0.0 1.0 114.0 3.0 7.0 0 0

MA1125.2_shift5 (ZNF384)
; oligos_6nt_mkv3_m5 versus MA1125.2 (ZNF384); m=17/32; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.43036; -----AAAAAAaa---- ; cor=; Ncor= a 0 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 0 0 0 c 0 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 0 0 0 g 0 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 0 0 0 t 0 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0 0 0 0

MA0047.4_shift3 (FOXA2)
; oligos_6nt_mkv3_m5 versus MA0047.4 (FOXA2); m=18/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.428007; ---wGTAAACA------ ; cor=; Ncor= a 0 0 0 93740.0 18770.0 3737.0 243805.0 223061.0 248214.0 2411.0 246665.0 0 0 0 0 0 0 c 0 0 0 12432.0 2928.0 2037.0 9424.0 22429.0 3329.0 196969.0 3086.0 0 0 0 0 0 0 g 0 0 0 38538.0 236311.0 1890.0 2641.0 6484.0 2805.0 3603.0 2984.0 0 0 0 0 0 0 t 0 0 0 117443.0 4144.0 254489.0 6283.0 10179.0 7805.0 59170.0 9418.0 0 0 0 0 0 0

MA0084.2_shift6 (SRY)
; oligos_6nt_mkv3_m5 versus MA0084.2 (SRY); m=19/32; ncol2=7; w=0; offset=3; strand=D; shift=6; score=0.426833; ------waACAAw---- ; cor=; Ncor= a 0 0 0 0 0 0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 0 0 c 0 0 0 0 0 0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 0 0 t 0 0 0 0 0 0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0 0 0

MA0442.3_shift8 (SOX10)
; oligos_6nt_mkv3_m5 versus MA0442.3 (SOX10); m=20/32; ncol2=6; w=0; offset=5; strand=D; shift=8; score=0.423558; --------ACAAAG--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 0 0 0 c 0 0 0 0 0 0 0 0 4.0 1989.0 7.0 28.0 23.0 13.0 0 0 0 g 0 0 0 0 0 0 0 0 3.0 11.0 7.0 20.0 12.0 2012.0 0 0 0 t 0 0 0 0 0 0 0 0 25.0 52.0 12.0 39.0 61.0 20.0 0 0 0

MA0768.3_rc_shift7 (Lef1_rc)
; oligos_6nt_mkv3_m5 versus MA0768.3_rc (Lef1_rc); m=21/32; ncol2=8; w=0; offset=4; strand=R; shift=7; score=0.418384; -------ATCAAAGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 872.0 41.0 51.0 1030.0 976.0 1036.0 45.0 90.0 0 0 c 0 0 0 0 0 0 0 51.0 25.0 882.0 15.0 39.0 14.0 21.0 130.0 0 0 g 0 0 0 0 0 0 0 28.0 28.0 75.0 18.0 47.0 19.0 989.0 788.0 0 0 t 0 0 0 0 0 0 0 130.0 987.0 73.0 18.0 19.0 12.0 26.0 73.0 0 0

MA1152.2_rc_shift8 (SOX15_rc)
; oligos_6nt_mkv3_m5 versus MA1152.2_rc (SOX15_rc); m=22/32; ncol2=7; w=0; offset=5; strand=R; shift=8; score=0.416936; --------ACAAwrr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 0 0 c 0 0 0 0 0 0 0 0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 0 0 g 0 0 0 0 0 0 0 0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 0 0 t 0 0 0 0 0 0 0 0 24.0 83.0 3.0 3.0 631.0 62.0 32.0 0 0

MA1606.2_shift4 (Foxf1)
; oligos_6nt_mkv3_m5 versus MA1606.2 (Foxf1); m=23/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.413816; ----rTAAACA------ ; cor=; Ncor= a 0 0 0 0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 0 0 0 0 0 0 c 0 0 0 0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 0 0 0 0 0 0 g 0 0 0 0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 0 0 0 0 0 0 t 0 0 0 0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 0 0 0 0 0 0

MA0850.1_shift4 (FOXP3)
; oligos_6nt_mkv3_m5 versus MA0850.1 (FOXP3); m=24/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.411593; ----rTAAACA------ ; cor=; Ncor= a 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 0 0 c 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 0 0 g 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 0 0 t 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0 0 0

MA0033.2_shift4 (FOXL1)
; oligos_6nt_mkv3_m5 versus MA0033.2 (FOXL1); m=25/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.40967; ----rTAAACA------ ; cor=; Ncor= a 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 0 0 c 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 0 0 g 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 0 0 t 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0 0 0

MA0480.3_shift4 (Foxo1)
; oligos_6nt_mkv3_m5 versus MA0480.3 (Foxo1); m=26/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.40839; ----GTAAACA------ ; cor=; Ncor= a 0 0 0 0 1411.0 945.0 12408.0 12663.0 12972.0 293.0 13332.0 0 0 0 0 0 0 c 0 0 0 0 481.0 555.0 934.0 849.0 387.0 12710.0 277.0 0 0 0 0 0 0 g 0 0 0 0 11670.0 1025.0 478.0 384.0 508.0 356.0 153.0 0 0 0 0 0 0 t 0 0 0 0 554.0 11591.0 296.0 220.0 249.0 757.0 354.0 0 0 0 0 0 0

MA0157.4_shift4 (Foxo3)
; oligos_6nt_mkv3_m5 versus MA0157.4 (Foxo3); m=27/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.408337; ----GTAAACA------ ; cor=; Ncor= a 0 0 0 0 3470.0 1546.0 22240.0 22288.0 22551.0 403.0 22141.0 0 0 0 0 0 0 c 0 0 0 0 590.0 435.0 968.0 803.0 483.0 21237.0 587.0 0 0 0 0 0 0 g 0 0 0 0 19202.0 1199.0 328.0 333.0 464.0 361.0 361.0 0 0 0 0 0 0 t 0 0 0 0 650.0 20732.0 376.0 488.0 414.0 1911.0 823.0 0 0 0 0 0 0

MA0868.3_shift7 (SOX8)
; oligos_6nt_mkv3_m5 versus MA0868.3 (SOX8); m=28/32; ncol2=7; w=0; offset=4; strand=D; shift=7; score=0.408124; -------AACAATr--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 0 0 0 c 0 0 0 0 0 0 0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 0 0 0 g 0 0 0 0 0 0 0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 0 0 0 t 0 0 0 0 0 0 0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 0 0 0

MA0852.3_shift4 (FOXK1)
; oligos_6nt_mkv3_m5 versus MA0852.3 (FOXK1); m=29/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.407792; ----GTAAACA------ ; cor=; Ncor= a 0 0 0 0 143.0 60.0 1003.0 999.0 1022.0 10.0 1015.0 0 0 0 0 0 0 c 0 0 0 0 28.0 5.0 37.0 37.0 13.0 958.0 16.0 0 0 0 0 0 0 g 0 0 0 0 868.0 44.0 10.0 11.0 10.0 12.0 12.0 0 0 0 0 0 0 t 0 0 0 0 17.0 947.0 6.0 9.0 11.0 76.0 13.0 0 0 0 0 0 0

MA1563.2_shift7 (SOX18)
; oligos_6nt_mkv3_m5 versus MA1563.2 (SOX18); m=30/32; ncol2=8; w=0; offset=4; strand=D; shift=7; score=0.405196; -------aACAATdv-- ; cor=; Ncor= a 0 0 0 0 0 0 0 424.0 424.0 0.0 424.0 424.0 0.0 203.0 382.0 0 0 c 0 0 0 0 0 0 0 81.0 0.0 424.0 0.0 35.0 0.0 0.0 551.0 0 0 g 0 0 0 0 0 0 0 170.0 0.0 91.0 0.0 17.0 0.0 221.0 424.0 0 0 t 0 0 0 0 0 0 0 34.0 0.0 2.0 0.0 0.0 447.0 228.0 0.0 0 0

MA0077.2_rc_shift7 (SOX9_rc)
; oligos_6nt_mkv3_m5 versus MA0077.2_rc (SOX9_rc); m=31/32; ncol2=8; w=0; offset=4; strand=R; shift=7; score=0.404877; -------AACAATrG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 54.0 59.0 0.0 65.0 71.0 4.0 24.0 9.0 0 0 c 0 0 0 0 0 0 0 6.0 4.0 72.0 4.0 2.0 0.0 6.0 9.0 0 0 g 0 0 0 0 0 0 0 7.0 0.0 2.0 0.0 1.0 1.0 38.0 55.0 0 0 t 0 0 0 0 0 0 0 9.0 13.0 2.0 7.0 2.0 71.0 8.0 3.0 0 0

MA0848.1_shift4 (FOXO4)
; oligos_6nt_mkv3_m5 versus MA0848.1 (FOXO4); m=32/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.404251; ----GTAAACA------ ; cor=; Ncor= a 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 0 0 c 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 0 0 g 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 0 0 t 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv3_m1_shift0 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv3_m1_shift0 (oligos_6nt_mkv3_m1)
; oligos_6nt_mkv3_m1; m=0 (reference); ncol1=22; shift=0; ncol=22; yryaTwTGCATATGCAwAtryr ; Alignment reference a 86 142 55 241 36 111 17 47 27 397 25 375 20 20 76 370 226 296 59 148 97 131 c 118 78 162 80 88 35 40 16 362 5 21 13 12 25 295 7 62 14 54 69 117 99 g 99 117 69 54 14 62 7 295 25 12 13 21 5 362 16 40 35 88 80 162 78 118 t 131 97 148 59 296 226 370 76 20 20 375 25 397 27 47 17 111 36 241 55 142 86

MA0507.3_rc_shift0 (POU2F2_rc)
; oligos_6nt_mkv3_m1 versus MA0507.3_rc (POU2F2_rc); m=1/5; ncol2=13; w=0; offset=0; strand=R; shift=0; score= 0.509; cTmATTTGCATAw--------- ; cor=; Ncor= a 788.0 1065.0 5505.0 9207.0 8.0 57.0 1929.0 1193.0 111.0 9207.0 0.0 9207.0 3315.0 0 0 0 0 0 0 0 0 0 c 5392.0 851.0 3703.0 35.0 0.0 23.0 0.0 127.0 9207.0 2.0 0.0 4.0 2020.0 0 0 0 0 0 0 0 0 0 g 1301.0 648.0 862.0 8.0 5.0 7.0 0.0 8014.0 0.0 13.0 0.0 100.0 435.0 0 0 0 0 0 0 0 0 0 t 1726.0 6644.0 1399.0 56.0 9207.0 9207.0 7279.0 2.0 0.0 0.0 9207.0 34.0 5892.0 0 0 0 0 0 0 0 0 0

MA0142.1_rc_shift3 (Pou5f1::Sox2_rc)
; oligos_6nt_mkv3_m1 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=2/5; ncol2=15; w=0; offset=3; strand=R; shift=3; score=0.487543; ---aTtTGCATrwsAAwr---- ; cor=; Ncor= a 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 0 0 c 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 0 0 g 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 0 0 t 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0 0 0

MA0784.3_rc_shift8 (POU1F1_rc)
; oligos_6nt_mkv3_m1 versus MA0784.3_rc (POU1F1_rc); m=3/5; ncol2=14; w=0; offset=8; strand=R; shift=8; score=0.456527; --------awTATGCwAATkAG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3278.0 1804.0 59.0 4127.0 17.0 3.0 16.0 2563.0 4127.0 4127.0 31.0 262.0 3907.0 504.0 c 0 0 0 0 0 0 0 0 384.0 57.0 5.0 0.0 5.0 1.0 3708.0 0.0 2.0 1.0 28.0 192.0 220.0 372.0 g 0 0 0 0 0 0 0 0 702.0 165.0 5.0 3.0 9.0 4127.0 67.0 0.0 13.0 0.0 7.0 1846.0 126.0 3623.0 t 0 0 0 0 0 0 0 0 849.0 2323.0 4127.0 3.0 4127.0 54.0 419.0 1564.0 91.0 0.0 4127.0 2281.0 106.0 131.0

MA0787.1_shift9 (POU3F2)
; oligos_6nt_mkv3_m1 versus MA0787.1 (POU3F2); m=4/5; ncol2=12; w=0; offset=9; strand=D; shift=9; score=0.446048; ---------wTATGCwAATka- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 0 c 0 0 0 0 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 0 g 0 0 0 0 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 0 t 0 0 0 0 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0 0

MA0788.1_shift8 (POU3F3)
; oligos_6nt_mkv3_m1 versus MA0788.1 (POU3F3); m=5/5; ncol2=13; w=0; offset=8; strand=D; shift=8; score=0.419029; --------wwTATGCwAATtw- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 0 c 0 0 0 0 0 0 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 0 g 0 0 0 0 0 0 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 0 t 0 0 0 0 0 0 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m2_shift1 (oligos_6nt_mkv3_m2)				; oligos_6nt_mkv3_m2; m=0 (reference); ncol1=13; shift=1; ncol=14; -ccCCCCACCCCcc ; Alignment reference a 0 238 226 62 65 35 22 821 29 28 29 113 220 281 c 0 512 445 912 984 1089 1100 109 1080 1067 1076 895 515 438 g 0 228 269 95 80 43 44 171 55 65 49 94 241 255 t 0 217 255 126 66 28 29 94 31 35 41 93 219 221
MA1961.2_rc_shift2 (PATZ1_rc)				; oligos_6nt_mkv3_m2 versus MA1961.2_rc (PATZ1_rc); m=1/32; ncol2=11; w=0; offset=1; strand=R; shift=2; score=0.77688; --sCCCCkCCCCs- ; cor=; Ncor= a 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 0 c 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 0 g 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 0 t 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0 0
MA0599.1_shift2 (KLF5)				; oligos_6nt_mkv3_m2 versus MA0599.1 (KLF5); m=2/32; ncol2=10; w=0; offset=1; strand=D; shift=2; score=0.705471; --gCCMCrCCCh-- ; cor=; Ncor= a 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0
MA1630.3_rc_shift3 (ZNF281_rc)				; oligos_6nt_mkv3_m2 versus MA1630.3_rc (ZNF281_rc); m=3/32; ncol2=10; w=0; offset=2; strand=R; shift=3; score=0.679062; ---CCCCTCCCCC- ; cor=; Ncor= a 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 1.0 0 c 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 998.0 0 g 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 1.0 0 t 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0 1.0 0
MA0741.1_shift2 (KLF16)				; oligos_6nt_mkv3_m2 versus MA0741.1 (KLF16); m=4/32; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.677043; --gmCMCgCCCMC- ; cor=; Ncor= a 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 c 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 g 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 t 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0
MA1653.2_shift3 (ZNF148)				; oligos_6nt_mkv3_m2 versus MA1653.2 (ZNF148); m=5/32; ncol2=10; w=0; offset=2; strand=D; shift=3; score=0.66793; ---CCCCTCCCcc- ; cor=; Ncor= a 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0
MA0753.3_shift4 (ZNF740)				; oligos_6nt_mkv3_m2 versus MA0753.3 (ZNF740); m=6/32; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.634215; ----CCCCCCCCAc ; cor=; Ncor= a 0 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 c 0 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 g 0 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 t 0 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0
MA1511.2_rc_shift3 (KLF10_rc)				; oligos_6nt_mkv3_m2 versus MA1511.2_rc (KLF10_rc); m=7/32; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.628584; ---CCMCGCCCC-- ; cor=; Ncor= a 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 c 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 g 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 t 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0
MA0747.2_shift3 (SP8)				; oligos_6nt_mkv3_m2 versus MA0747.2 (SP8); m=8/32; ncol2=11; w=0; offset=2; strand=D; shift=3; score=0.621375; ---mCACgCCCmCy ; cor=; Ncor= a 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 c 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 g 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 t 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0
MA0079.5_rc_shift3 (SP1_rc)				; oligos_6nt_mkv3_m2 versus MA0079.5_rc (SP1_rc); m=9/32; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.620024; ---CyCCKCCCC-- ; cor=; Ncor= a 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 c 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 g 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 t 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0
MA1107.3_shift2 (KLF9)				; oligos_6nt_mkv3_m2 versus MA1107.3 (KLF9); m=10/32; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.619103; --gCCACACCCAC- ; cor=; Ncor= a 0 0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 0 c 0 0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 0 g 0 0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 0 t 0 0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 0
MA0746.3_shift2 (SP3)				; oligos_6nt_mkv3_m2 versus MA0746.3 (SP3); m=11/32; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.617164; --rCCACGCCCmC- ; cor=; Ncor= a 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 0 c 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 0 g 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 0 t 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 0
MA0685.2_rc_shift3 (SP4_rc)				; oligos_6nt_mkv3_m2 versus MA0685.2_rc (SP4_rc); m=12/32; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.614877; ---CyCCKCCCc-- ; cor=; Ncor= a 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0
MA0740.2_rc_shift3 (KLF14_rc)				; oligos_6nt_mkv3_m2 versus MA0740.2_rc (KLF14_rc); m=13/32; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.612055; ---CCMCGCCCm-- ; cor=; Ncor= a 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 c 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 g 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 t 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0
MA0039.5_shift3 (KLF4)				; oligos_6nt_mkv3_m2 versus MA0039.5 (KLF4); m=14/32; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.610711; ---CCCCACCC--- ; cor=; Ncor= a 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 c 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 g 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 t 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0
MA0516.3_rc_shift3 (SP2_rc)				; oligos_6nt_mkv3_m2 versus MA0516.3_rc (SP2_rc); m=15/32; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.607618; ---cCCCGCCCC-- ; cor=; Ncor= a 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 c 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 g 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 t 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0
MA0742.2_rc_shift3 (KLF12_rc)				; oligos_6nt_mkv3_m2 versus MA0742.2_rc (KLF12_rc); m=16/32; ncol2=9; w=0; offset=2; strand=R; shift=3; score=0.601209; ---CCCCGCCCC-- ; cor=; Ncor= a 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 c 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 g 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 t 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0
MA1564.2_shift3 (SP9)				; oligos_6nt_mkv3_m2 versus MA1564.2 (SP9); m=17/32; ncol2=10; w=0; offset=2; strand=D; shift=3; score=0.593622; ---cCmCGCCCmc- ; cor=; Ncor= a 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 c 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 g 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 t 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0
MA0493.3_rc_shift3 (KLF1_rc)				; oligos_6nt_mkv3_m2 versus MA0493.3_rc (KLF1_rc); m=18/32; ncol2=8; w=0; offset=2; strand=R; shift=3; score=0.578834; ---CCmCrCCC--- ; cor=; Ncor= a 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0
MA1512.2_shift3 (KLF11)				; oligos_6nt_mkv3_m2 versus MA1512.2 (KLF11); m=19/32; ncol2=10; w=0; offset=2; strand=D; shift=3; score=0.568288; ---cCACGCCCmC- ; cor=; Ncor= a 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 c 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 g 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 t 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0
MA2328.1_shift4 (ZBED4)				; oligos_6nt_mkv3_m2 versus MA2328.1 (ZBED4); m=20/32; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.552248; ----CcCGCyCCGC ; cor=; Ncor= a 0 0 0 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 c 0 0 0 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 g 0 0 0 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 t 0 0 0 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0
MA1959.2_rc_shift3 (KLF7_rc)				; oligos_6nt_mkv3_m2 versus MA1959.2_rc (KLF7_rc); m=21/32; ncol2=8; w=0; offset=2; strand=R; shift=3; score=0.548682; ---CcMCGCCC--- ; cor=; Ncor= a 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0
MA0162.5_shift1 (EGR1)				; oligos_6nt_mkv3_m2 versus MA0162.5 (EGR1); m=22/32; ncol2=10; w=0; offset=0; strand=D; shift=1; score=0.539139; -mCGCCCACgC--- ; cor=; Ncor= a 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 0 0 c 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 0 0 g 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 0 0 t 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0 0 0
MA1515.2_shift3 (KLF2)				; oligos_6nt_mkv3_m2 versus MA1515.2 (KLF2); m=23/32; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.531781; ---CCmCrCCC--- ; cor=; Ncor= a 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 c 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 g 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 t 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0
MA1513.2_shift3 (KLF15)				; oligos_6nt_mkv3_m2 versus MA1513.2 (KLF15); m=24/32; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.529545; ---cCCCGCCC--- ; cor=; Ncor= a 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0
MA1517.2_shift5 (KLF6)				; oligos_6nt_mkv3_m2 versus MA1517.2 (KLF6); m=25/32; ncol2=9; w=0; offset=4; strand=D; shift=5; score=0.516442; -----cCACRCCCm ; cor=; Ncor= a 0 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 c 0 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 g 0 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 t 0 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0
MA1522.2_shift3 (MAZ)				; oligos_6nt_mkv3_m2 versus MA1522.2 (MAZ); m=26/32; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.514798; ---CCCCTCCc--- ; cor=; Ncor= a 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0
MA1627.2_shift5 (Wt1)				; oligos_6nt_mkv3_m2 versus MA1627.2 (Wt1); m=27/32; ncol2=10; w=0; offset=4; strand=D; shift=5; score=0.491748; -----cCTCCCCCA ; cor=; Ncor= a 0 0 0 0 0 839.0 48.0 120.0 21.0 40.0 43.0 850.0 31.0 3294.0 c 0 0 0 0 0 2948.0 4546.0 69.0 4602.0 4354.0 4252.0 3636.0 4573.0 53.0 g 0 0 0 0 0 404.0 58.0 319.0 42.0 75.0 120.0 101.0 46.0 990.0 t 0 0 0 0 0 500.0 39.0 4183.0 26.0 222.0 276.0 104.0 41.0 354.0
MA1715.1_shift3 (ZNF707)				; oligos_6nt_mkv3_m2 versus MA1715.1 (ZNF707); m=28/32; ncol2=15; w=0; offset=2; strand=D; shift=3; score=0.454953; ---CCCCACTYCTG ; cor=; Ncor= a 0 0 0 37.0 37.0 12.0 41.0 1109.0 9.0 5.0 4.0 12.0 17.0 42.0 c 0 0 0 960.0 1057.0 1109.0 1044.0 5.0 1111.0 11.0 821.0 1079.0 83.0 15.0 g 0 0 0 34.0 31.0 9.0 8.0 17.0 5.0 2.0 11.0 9.0 5.0 1033.0 t 0 0 0 126.0 32.0 27.0 64.0 26.0 32.0 1139.0 321.0 57.0 1052.0 67.0
MA0695.2_shift2 (ZBTB7C)				; oligos_6nt_mkv3_m2 versus MA0695.2 (ZBTB7C); m=29/32; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.446589; --cgACCACC---- ; cor=; Ncor= a 0 0 183.0 351.0 1018.0 39.0 0.0 1018.0 18.0 90.0 0 0 0 0 c 0 0 1018.0 128.0 225.0 1018.0 1018.0 269.0 1018.0 1018.0 0 0 0 0 g 0 0 215.0 1018.0 8.0 0.0 5.0 8.0 7.0 54.0 0 0 0 0 t 0 0 110.0 137.0 24.0 0.0 14.0 10.0 17.0 90.0 0 0 0 0
MA0471.3_rc_shift2 (E2F6_rc)				; oligos_6nt_mkv3_m2 versus MA0471.3_rc (E2F6_rc); m=30/32; ncol2=8; w=0; offset=1; strand=R; shift=2; score=0.433958; --TTCCCGCC---- ; cor=; Ncor= a 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 0 c 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 0 g 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 0 t 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0 0
MA1578.2_shift1 (VEZF1)				; oligos_6nt_mkv3_m2 versus MA1578.2 (VEZF1); m=31/32; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.422571; -CCCCCC------- ; cor=; Ncor= a 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 0 0 0 0 c 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 0 0 0 0 g 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0 0 0 0 t 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0 0 0 0 0
MA0056.3_shift0 (MZF1)				; oligos_6nt_mkv3_m2 versus MA0056.3 (MZF1); m=32/32; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.400118; AATCCCCA------ ; cor=; Ncor= a 5855.0 7149.0 106.0 100.0 135.0 111.0 117.0 6036.0 0 0 0 0 0 0 c 1016.0 426.0 56.0 7949.0 7939.0 7919.0 7673.0 611.0 0 0 0 0 0 0 g 999.0 385.0 98.0 100.0 54.0 58.0 83.0 484.0 0 0 0 0 0 0 t 372.0 282.0 7982.0 93.0 114.0 154.0 369.0 1111.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m3_shift0 (oligos_6nt_mkv3_m3)				; oligos_6nt_mkv3_m3; m=0 (reference); ncol1=21; shift=0; ncol=21; yhcaTTTGCATaAcAAwgsmm ; Alignment reference a 141 209 180 501 47 82 96 99 42 766 25 519 544 55 658 688 459 195 178 270 218 c 223 205 311 89 38 104 22 40 726 12 29 59 32 501 49 31 39 58 219 216 233 g 189 146 126 96 24 45 8 633 9 5 13 123 28 148 24 43 42 485 306 181 169 t 237 230 173 104 681 559 664 18 13 7 723 89 186 86 59 28 250 52 87 123 170
MA1962.1_shift2 (POU2F1::SOX2)				; oligos_6nt_mkv3_m3 versus MA1962.1 (POU2F1::SOX2); m=1/11; ncol2=17; w=0; offset=2; strand=D; shift=2; score=0.754789; --mATTWrCATmACAAWrg-- ; cor=; Ncor= a 0 0 7886.0 15701.0 553.0 1136.0 5710.0 5841.0 1656.0 15595.0 32.0 7899.0 16152.0 376.0 16231.0 16210.0 5996.0 7139.0 2147.0 0 0 c 0 0 4993.0 528.0 216.0 552.0 471.0 812.0 15582.0 113.0 154.0 5483.0 518.0 15839.0 175.0 133.0 340.0 636.0 3768.0 0 0 g 0 0 2541.0 434.0 22.0 53.0 65.0 10408.0 70.0 501.0 49.0 2557.0 158.0 683.0 89.0 61.0 87.0 7984.0 8916.0 0 0 t 0 0 825.0 1325.0 16133.0 16109.0 14381.0 25.0 141.0 35.0 16010.0 306.0 629.0 2079.0 372.0 127.0 13866.0 1558.0 1414.0 0 0
MA0142.1_rc_shift3 (Pou5f1::Sox2_rc)				; oligos_6nt_mkv3_m3 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=2/11; ncol2=15; w=0; offset=3; strand=R; shift=3; score=0.705446; ---aTtTGCATrwsAAwr--- ; cor=; Ncor= a 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 0 c 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 0 g 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 0 t 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0 0
MA0507.3_rc_shift0 (POU2F2_rc)				; oligos_6nt_mkv3_m3 versus MA0507.3_rc (POU2F2_rc); m=3/11; ncol2=13; w=0; offset=0; strand=R; shift=0; score=0.566316; cTmATTTGCATAw-------- ; cor=; Ncor= a 788.0 1065.0 5505.0 9207.0 8.0 57.0 1929.0 1193.0 111.0 9207.0 0.0 9207.0 3315.0 0 0 0 0 0 0 0 0 c 5392.0 851.0 3703.0 35.0 0.0 23.0 0.0 127.0 9207.0 2.0 0.0 4.0 2020.0 0 0 0 0 0 0 0 0 g 1301.0 648.0 862.0 8.0 5.0 7.0 0.0 8014.0 0.0 13.0 0.0 100.0 435.0 0 0 0 0 0 0 0 0 t 1726.0 6644.0 1399.0 56.0 9207.0 9207.0 7279.0 2.0 0.0 0.0 9207.0 34.0 5892.0 0 0 0 0 0 0 0 0
MA0784.3_shift0 (POU1F1)				; oligos_6nt_mkv3_m3 versus MA0784.3 (POU1F1); m=4/11; ncol2=14; w=0; offset=0; strand=D; shift=0; score=0.56559; CTmATTwGCATAwt------- ; cor=; Ncor= a 131.0 106.0 2281.0 4127.0 0.0 91.0 1564.0 419.0 54.0 4127.0 3.0 4127.0 2323.0 849.0 0 0 0 0 0 0 0 c 3623.0 126.0 1846.0 7.0 0.0 13.0 0.0 67.0 4127.0 9.0 3.0 5.0 165.0 702.0 0 0 0 0 0 0 0 g 372.0 220.0 192.0 28.0 1.0 2.0 0.0 3708.0 1.0 5.0 0.0 5.0 57.0 384.0 0 0 0 0 0 0 0 t 504.0 3907.0 262.0 31.0 4127.0 4127.0 2563.0 16.0 3.0 17.0 4127.0 59.0 1804.0 3278.0 0 0 0 0 0 0 0
MA0788.1_rc_shift1 (POU3F3_rc)				; oligos_6nt_mkv3_m3 versus MA0788.1_rc (POU3F3_rc); m=5/11; ncol2=13; w=0; offset=1; strand=R; shift=1; score=0.530106; -waATTwGCATAww------- ; cor=; Ncor= a 0 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 0 0 0 0 0 0 0 c 0 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 0 0 0 0 0 0 0 g 0 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 0 0 0 0 0 0 0 t 0 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0 0 0 0 0 0 0 0
MA0787.1_rc_shift1 (POU3F2_rc)				; oligos_6nt_mkv3_m3 versus MA0787.1_rc (POU3F2_rc); m=6/11; ncol2=12; w=0; offset=1; strand=R; shift=1; score=0.527342; -tmATTwGCATAw-------- ; cor=; Ncor= a 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 0 0 0 0 0 0 0 c 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 0 0 0 0 0 0 0 g 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 0 0 0 0 0 0 0 t 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0 0 0 0 0 0 0 0
MA0786.2_rc_shift3 (POU3F1_rc)				; oligos_6nt_mkv3_m3 versus MA0786.2_rc (POU3F1_rc); m=7/11; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.453924; ---ATTwrCATAw-------- ; cor=; Ncor= a 0 0 0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 0 0 0 0 0 0 0 c 0 0 0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 0 0 0 0 0 0 0 g 0 0 0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 0 0 0 0 0 0 0 t 0 0 0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0 0 0 0 0 0 0 0
MA0627.3_rc_shift3 (POU2F3_rc)				; oligos_6nt_mkv3_m3 versus MA0627.3_rc (POU2F3_rc); m=8/11; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.424627; ---ATTTGCATa--------- ; cor=; Ncor= a 0 0 0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 0 0 0 0 0 0 0 0 0 c 0 0 0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 0 0 0 0 0 0 0 0 0 g 0 0 0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 0 0 0 0 0 0 0 0 0 t 0 0 0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 0 0 0 0 0 0 0 0 0
MA0785.2_rc_shift3 (POU2F1_rc)				; oligos_6nt_mkv3_m3 versus MA0785.2_rc (POU2F1_rc); m=9/11; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.416793; ---ATTwgCATA--------- ; cor=; Ncor= a 0 0 0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 0 0 0 0 0 0 0 0 0 c 0 0 0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 0 0 0 0 0 0 0 0 0 g 0 0 0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 0 0 0 0 0 0 0 0 0 t 0 0 0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 0 0 0 0 0 0 0 0 0
MA0792.1_rc_shift3 (POU5F1B_rc)				; oligos_6nt_mkv3_m3 versus MA0792.1_rc (POU5F1B_rc); m=10/11; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.416653; ---ATTwrCATA--------- ; cor=; Ncor= a 0 0 0 9519.0 203.0 896.0 3220.0 3828.0 1790.0 9519.0 84.0 9519.0 0 0 0 0 0 0 0 0 0 c 0 0 0 750.0 97.0 856.0 65.0 1293.0 9519.0 206.0 67.0 808.0 0 0 0 0 0 0 0 0 0 g 0 0 0 537.0 65.0 144.0 51.0 9519.0 94.0 364.0 21.0 1778.0 0 0 0 0 0 0 0 0 0 t 0 0 0 1559.0 9519.0 9519.0 6299.0 398.0 322.0 171.0 9519.0 1326.0 0 0 0 0 0 0 0 0 0
MA0789.1_rc_shift3 (POU3F4_rc)				; oligos_6nt_mkv3_m3 versus MA0789.1_rc (POU3F4_rc); m=11/11; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.412927; ---ATTwGCATA--------- ; cor=; Ncor= a 0 0 0 11117.0 168.0 885.0 4670.0 2565.0 245.0 11117.0 26.0 11117.0 0 0 0 0 0 0 0 0 0 c 0 0 0 292.0 88.0 315.0 56.0 602.0 11117.0 24.0 68.0 136.0 0 0 0 0 0 0 0 0 0 g 0 0 0 247.0 47.0 332.0 10.0 11117.0 19.0 59.0 23.0 349.0 0 0 0 0 0 0 0 0 0 t 0 0 0 705.0 11117.0 11117.0 6447.0 136.0 53.0 59.0 11117.0 941.0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m4_shift5 (oligos_6nt_mkv3_m4)				; oligos_6nt_mkv3_m4; m=0 (reference); ncol1=11; shift=5; ncol=16; -----atTTACATAws ; Alignment reference a 0 0 0 0 0 460 228 61 32 921 63 1109 80 1031 380 286 c 0 0 0 0 0 212 227 61 41 41 1038 34 77 47 227 324 g 0 0 0 0 0 267 182 29 23 187 29 15 56 43 199 301 t 0 0 0 0 0 257 559 1045 1100 47 66 38 983 75 390 285
MA0786.2_rc_shift5 (POU3F1_rc)				; oligos_6nt_mkv3_m4 versus MA0786.2_rc (POU3F1_rc); m=1/42; ncol2=10; w=0; offset=0; strand=R; shift=5; score=0.750678; -----ATTwrCATAw- ; cor=; Ncor= a 0 0 0 0 0 2471.0 63.0 284.0 1048.0 1119.0 232.0 2471.0 21.0 2471.0 1437.0 0 c 0 0 0 0 0 128.0 25.0 130.0 21.0 413.0 2471.0 21.0 26.0 128.0 322.0 0 g 0 0 0 0 0 95.0 20.0 103.0 1.0 2471.0 13.0 53.0 7.0 186.0 126.0 0 t 0 0 0 0 0 259.0 2471.0 2471.0 1423.0 170.0 37.0 44.0 2471.0 505.0 1034.0 0
MA0843.2_shift6 (TEF)				; oligos_6nt_mkv3_m4 versus MA0843.2 (TEF); m=2/42; ncol2=10; w=0; offset=1; strand=D; shift=6; score=0.717234; ------rTTACrTAAy ; cor=; Ncor= a 0 0 0 0 0 0 1971.0 90.0 107.0 3601.0 17.0 1324.0 0.0 3601.0 3601.0 0.0 c 0 0 0 0 0 0 372.0 18.0 0.0 0.0 3601.0 0.0 133.0 76.0 0.0 2120.0 g 0 0 0 0 0 0 1630.0 5.0 31.0 108.0 0.0 2277.0 43.0 11.0 19.0 269.0 t 0 0 0 0 0 0 8.0 3601.0 3601.0 0.0 446.0 0.0 3601.0 161.0 10.0 1481.0
MA0025.3_rc_shift6 (NFIL3_rc)				; oligos_6nt_mkv3_m4 versus MA0025.3_rc (NFIL3_rc); m=3/42; ncol2=9; w=0; offset=1; strand=R; shift=6; score=0.713015; ------aTTrCATAA- ; cor=; Ncor= a 0 0 0 0 0 0 13143.0 474.0 434.0 9180.0 610.0 20334.0 433.0 20606.0 20927.0 0 c 0 0 0 0 0 0 2701.0 360.0 171.0 454.0 20459.0 492.0 990.0 1714.0 518.0 0 g 0 0 0 0 0 0 4959.0 251.0 543.0 12004.0 467.0 1511.0 220.0 208.0 681.0 0 t 0 0 0 0 0 0 2193.0 21911.0 21848.0 1358.0 1460.0 659.0 21353.0 468.0 870.0 0
MA0639.2_shift6 (DBP)				; oligos_6nt_mkv3_m4 versus MA0639.2 (DBP); m=4/42; ncol2=10; w=0; offset=1; strand=D; shift=6; score=0.695648; ------rTTAYRTAAy ; cor=; Ncor= a 0 0 0 0 0 0 3706.0 5.0 4.0 7100.0 2.0 3180.0 3.0 7100.0 7100.0 158.0 c 0 0 0 0 0 0 1130.0 4.0 6.0 0.0 7100.0 17.0 541.0 288.0 1.0 3707.0 g 0 0 0 0 0 0 3393.0 2.0 602.0 498.0 21.0 7100.0 7.0 7.0 2.0 1543.0 t 0 0 0 0 0 0 93.0 7100.0 7100.0 4.0 2664.0 1.0 7100.0 6.0 2.0 3393.0
MA0792.1_rc_shift5 (POU5F1B_rc)				; oligos_6nt_mkv3_m4 versus MA0792.1_rc (POU5F1B_rc); m=5/42; ncol2=9; w=0; offset=0; strand=R; shift=5; score=0.683103; -----ATTwrCATA-- ; cor=; Ncor= a 0 0 0 0 0 9519.0 203.0 896.0 3220.0 3828.0 1790.0 9519.0 84.0 9519.0 0 0 c 0 0 0 0 0 750.0 97.0 856.0 65.0 1293.0 9519.0 206.0 67.0 808.0 0 0 g 0 0 0 0 0 537.0 65.0 144.0 51.0 9519.0 94.0 364.0 21.0 1778.0 0 0 t 0 0 0 0 0 1559.0 9519.0 9519.0 6299.0 398.0 322.0 171.0 9519.0 1326.0 0 0
MA0043.4_rc_shift6 (HLF_rc)				; oligos_6nt_mkv3_m4 versus MA0043.4_rc (HLF_rc); m=6/42; ncol2=9; w=0; offset=1; strand=R; shift=6; score=0.683063; ------rTTRCATAA- ; cor=; Ncor= a 0 0 0 0 0 0 6488.0 113.0 98.0 6653.0 189.0 22426.0 209.0 23271.0 23739.0 0 c 0 0 0 0 0 0 3300.0 189.0 48.0 199.0 21705.0 253.0 1344.0 895.0 148.0 0 g 0 0 0 0 0 0 13237.0 67.0 122.0 17203.0 112.0 1548.0 125.0 96.0 242.0 0 t 0 0 0 0 0 0 1399.0 24055.0 24156.0 369.0 2418.0 197.0 22746.0 162.0 295.0 0
MA0785.2_rc_shift5 (POU2F1_rc)				; oligos_6nt_mkv3_m4 versus MA0785.2_rc (POU2F1_rc); m=7/42; ncol2=9; w=0; offset=0; strand=R; shift=5; score= 0.6803; -----ATTwgCATA-- ; cor=; Ncor= a 0 0 0 0 0 10582.0 158.0 787.0 3651.0 3375.0 1326.0 10582.0 43.0 10582.0 0 0 c 0 0 0 0 0 755.0 51.0 879.0 46.0 1351.0 10582.0 213.0 29.0 474.0 0 0 g 0 0 0 0 0 457.0 37.0 108.0 33.0 10582.0 82.0 501.0 12.0 1347.0 0 0 t 0 0 0 0 0 1422.0 10582.0 10582.0 6932.0 300.0 186.0 153.0 10582.0 756.0 0 0
MA0627.3_rc_shift5 (POU2F3_rc)				; oligos_6nt_mkv3_m4 versus MA0627.3_rc (POU2F3_rc); m=8/42; ncol2=9; w=0; offset=0; strand=R; shift=5; score= 0.6697; -----ATTTGCATa-- ; cor=; Ncor= a 0 0 0 0 0 43338.0 330.0 3276.0 896.0 3716.0 2827.0 53366.0 931.0 37593.0 0 0 c 0 0 0 0 0 4098.0 233.0 804.0 138.0 1079.0 51971.0 1251.0 354.0 3029.0 0 0 g 0 0 0 0 0 3478.0 164.0 567.0 80.0 50288.0 251.0 322.0 194.0 6885.0 0 0 t 0 0 0 0 0 5115.0 55302.0 51382.0 54915.0 946.0 980.0 1090.0 54550.0 8522.0 0 0
MA0789.1_rc_shift5 (POU3F4_rc)				; oligos_6nt_mkv3_m4 versus MA0789.1_rc (POU3F4_rc); m=9/42; ncol2=9; w=0; offset=0; strand=R; shift=5; score=0.663355; -----ATTwGCATA-- ; cor=; Ncor= a 0 0 0 0 0 11117.0 168.0 885.0 4670.0 2565.0 245.0 11117.0 26.0 11117.0 0 0 c 0 0 0 0 0 292.0 88.0 315.0 56.0 602.0 11117.0 24.0 68.0 136.0 0 0 g 0 0 0 0 0 247.0 47.0 332.0 10.0 11117.0 19.0 59.0 23.0 349.0 0 0 t 0 0 0 0 0 705.0 11117.0 11117.0 6447.0 136.0 53.0 59.0 11117.0 941.0 0 0
MA0788.1_rc_shift3 (POU3F3_rc)				; oligos_6nt_mkv3_m4 versus MA0788.1_rc (POU3F3_rc); m=10/42; ncol2=13; w=-2; offset=-2; strand=R; shift=3; score=0.652146; ---waATTwGCATAww ; cor=; Ncor= a 0 0 0 542.0 1078.0 1078.0 14.0 79.0 572.0 343.0 86.0 1078.0 30.0 1078.0 637.0 290.0 c 0 0 0 115.0 237.0 12.0 15.0 77.0 1.0 118.0 1078.0 49.0 12.0 64.0 131.0 137.0 g 0 0 0 85.0 141.0 20.0 6.0 11.0 4.0 1078.0 10.0 33.0 11.0 57.0 41.0 75.0 t 0 0 0 536.0 240.0 53.0 1078.0 1078.0 506.0 28.0 22.0 25.0 1078.0 129.0 440.0 576.0
MA1607.2_rc_shift4 (Foxl2_rc)				; oligos_6nt_mkv3_m4 versus MA1607.2_rc (Foxl2_rc); m=11/42; ncol2=10; w=-1; offset=-1; strand=R; shift=4; score=0.624262; ----TGTTTACAtw-- ; cor=; Ncor= a 0 0 0 0 1270.0 1970.0 328.0 366.0 204.0 16284.0 479.0 12849.0 2785.0 8493.0 0 0 c 0 0 0 0 401.0 151.0 411.0 187.0 112.0 419.0 14648.0 1371.0 2107.0 1599.0 0 0 g 0 0 0 0 807.0 15698.0 216.0 336.0 558.0 301.0 367.0 896.0 2051.0 1576.0 0 0 t 0 0 0 0 15623.0 282.0 17146.0 17212.0 17227.0 1097.0 2607.0 2985.0 11158.0 6433.0 0 0
MA0787.1_rc_shift3 (POU3F2_rc)				; oligos_6nt_mkv3_m4 versus MA0787.1_rc (POU3F2_rc); m=12/42; ncol2=12; w=-2; offset=-2; strand=R; shift=3; score=0.617632; ---tmATTwGCATAw- ; cor=; Ncor= a 0 0 0 562.0 840.0 1292.0 13.0 45.0 604.0 372.0 60.0 1292.0 0.0 1292.0 700.0 0 c 0 0 0 261.0 452.0 28.0 0.0 32.0 1.0 153.0 1292.0 12.0 25.0 40.0 171.0 0 g 0 0 0 262.0 165.0 19.0 6.0 16.0 4.0 1292.0 9.0 30.0 16.0 65.0 61.0 0 t 0 0 0 1292.0 137.0 63.0 1292.0 1292.0 688.0 68.0 19.0 28.0 1292.0 163.0 591.0 0
MA0784.3_shift2 (POU1F1)				; oligos_6nt_mkv3_m4 versus MA0784.3 (POU1F1); m=13/42; ncol2=14; w=-3; offset=-3; strand=D; shift=2; score=0.613957; --CTmATTwGCATAwt ; cor=; Ncor= a 0 0 131.0 106.0 2281.0 4127.0 0.0 91.0 1564.0 419.0 54.0 4127.0 3.0 4127.0 2323.0 849.0 c 0 0 3623.0 126.0 1846.0 7.0 0.0 13.0 0.0 67.0 4127.0 9.0 3.0 5.0 165.0 702.0 g 0 0 372.0 220.0 192.0 28.0 1.0 2.0 0.0 3708.0 1.0 5.0 0.0 5.0 57.0 384.0 t 0 0 504.0 3907.0 262.0 31.0 4127.0 4127.0 2563.0 16.0 3.0 17.0 4127.0 59.0 1804.0 3278.0
MA0845.1_rc_shift3 (FOXB1_rc)				; oligos_6nt_mkv3_m4 versus MA0845.1_rc (FOXB1_rc); m=14/42; ncol2=11; w=-2; offset=-2; strand=R; shift=3; score=0.603075; ---aTrTTKACwTw-- ; cor=; Ncor= a 0 0 0 4008.0 147.0 4589.0 216.0 381.0 73.0 6841.0 124.0 4858.0 561.0 4448.0 0 0 c 0 0 0 556.0 157.0 104.0 47.0 0.0 75.0 113.0 6841.0 409.0 1498.0 190.0 0 0 g 0 0 0 573.0 0.0 2252.0 47.0 213.0 1950.0 240.0 54.0 218.0 263.0 272.0 0 0 t 0 0 0 1704.0 6841.0 28.0 6841.0 6841.0 4891.0 180.0 1159.0 1983.0 5343.0 2393.0 0 0
MA0507.3_rc_shift2 (POU2F2_rc)				; oligos_6nt_mkv3_m4 versus MA0507.3_rc (POU2F2_rc); m=15/42; ncol2=13; w=-3; offset=-3; strand=R; shift=2; score=0.590279; --cTmATTTGCATAw- ; cor=; Ncor= a 0 0 788.0 1065.0 5505.0 9207.0 8.0 57.0 1929.0 1193.0 111.0 9207.0 0.0 9207.0 3315.0 0 c 0 0 5392.0 851.0 3703.0 35.0 0.0 23.0 0.0 127.0 9207.0 2.0 0.0 4.0 2020.0 0 g 0 0 1301.0 648.0 862.0 8.0 5.0 7.0 0.0 8014.0 0.0 13.0 0.0 100.0 435.0 0 t 0 0 1726.0 6644.0 1399.0 56.0 9207.0 9207.0 7279.0 2.0 0.0 0.0 9207.0 34.0 5892.0 0
MA0032.2_rc_shift3 (FOXC1_rc)				; oligos_6nt_mkv3_m4 versus MA0032.2_rc (FOXC1_rc); m=16/42; ncol2=11; w=-2; offset=-2; strand=R; shift=3; score=0.572848; ---wTrTTKAYwTw-- ; cor=; Ncor= a 0 0 0 11787.0 184.0 9708.0 112.0 57.0 45.0 18489.0 51.0 10596.0 1386.0 12038.0 0 0 c 0 0 0 1107.0 433.0 165.0 141.0 0.0 21.0 390.0 13631.0 2422.0 4165.0 304.0 0 0 g 0 0 0 1558.0 27.0 8782.0 56.0 108.0 5372.0 1652.0 336.0 2008.0 728.0 772.0 0 0 t 0 0 0 6702.0 18489.0 122.0 18489.0 18489.0 13117.0 2496.0 4858.0 7893.0 14324.0 6452.0 0 0
MA0142.1_rc_shift5 (Pou5f1::Sox2_rc)				; oligos_6nt_mkv3_m4 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=17/42; ncol2=15; w=0; offset=0; strand=R; shift=5; score=0.563336; -----aTtTGCATrws ; cor=; Ncor= a 0 0 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 c 0 0 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 g 0 0 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 t 0 0 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0
MA1115.2_rc_shift6 (POU5F1_rc)				; oligos_6nt_mkv3_m4 versus MA1115.2_rc (POU5F1_rc); m=18/42; ncol2=7; w=0; offset=1; strand=R; shift=6; score=0.536457; ------TTTGCAT--- ; cor=; Ncor= a 0 0 0 0 0 0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 0 0 0 c 0 0 0 0 0 0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 0 0 0 g 0 0 0 0 0 0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 0 0 0 t 0 0 0 0 0 0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 0 0 0
MA0846.2_rc_shift3 (FOXC2_rc)				; oligos_6nt_mkv3_m4 versus MA0846.2_rc (FOXC2_rc); m=19/42; ncol2=11; w=-2; offset=-2; strand=R; shift=3; score=0.529306; ---wTRTTTAywTw-- ; cor=; Ncor= a 0 0 0 7160.0 215.0 6021.0 242.0 107.0 122.0 20456.0 136.0 9155.0 2080.0 11517.0 0 0 c 0 0 0 1710.0 328.0 68.0 279.0 81.0 87.0 321.0 14038.0 3129.0 5093.0 454.0 0 0 g 0 0 0 2087.0 101.0 14435.0 105.0 344.0 6759.0 3773.0 440.0 3476.0 1652.0 1279.0 0 0 t 0 0 0 13296.0 20456.0 31.0 20456.0 20456.0 20456.0 2005.0 6418.0 11301.0 20456.0 8939.0 0 0
MA0606.3_rc_shift5 (Nfat5_rc)				; oligos_6nt_mkv3_m4 versus MA0606.3_rc (Nfat5_rc); m=20/42; ncol2=8; w=0; offset=0; strand=R; shift=5; score=0.515715; -----TTTTCCAT--- ; cor=; Ncor= a 0 0 0 0 0 14.0 10.0 9.0 5.0 7.0 11.0 302.0 13.0 0 0 0 c 0 0 0 0 0 19.0 8.0 10.0 15.0 325.0 332.0 9.0 47.0 0 0 0 g 0 0 0 0 0 8.0 4.0 1.0 8.0 8.0 0.0 10.0 17.0 0 0 0 t 0 0 0 0 0 315.0 334.0 336.0 328.0 16.0 13.0 35.0 279.0 0 0 0
MA2118.1_rc_shift4 (FOXS1_rc)				; oligos_6nt_mkv3_m4 versus MA2118.1_rc (FOXS1_rc); m=21/42; ncol2=8; w=-1; offset=-1; strand=R; shift=4; score=0.493878; ----TGTTTACa---- ; cor=; Ncor= a 0 0 0 0 10.0 36.0 5.0 5.0 9.0 334.0 7.0 239.0 0 0 0 0 c 0 0 0 0 3.0 7.0 5.0 8.0 5.0 12.0 323.0 49.0 0 0 0 0 g 0 0 0 0 5.0 322.0 3.0 16.0 15.0 15.0 8.0 20.0 0 0 0 0 t 0 0 0 0 356.0 9.0 361.0 345.0 345.0 13.0 36.0 66.0 0 0 0 0
MA1962.1_shift4 (POU2F1::SOX2)				; oligos_6nt_mkv3_m4 versus MA1962.1 (POU2F1::SOX2); m=22/42; ncol2=17; w=-1; offset=-1; strand=D; shift=4; score=0.488669; ----mATTWrCATmAC ; cor=; Ncor= a 0 0 0 0 7886.0 15701.0 553.0 1136.0 5710.0 5841.0 1656.0 15595.0 32.0 7899.0 16152.0 376.0 c 0 0 0 0 4993.0 528.0 216.0 552.0 471.0 812.0 15582.0 113.0 154.0 5483.0 518.0 15839.0 g 0 0 0 0 2541.0 434.0 22.0 53.0 65.0 10408.0 70.0 501.0 49.0 2557.0 158.0 683.0 t 0 0 0 0 825.0 1325.0 16133.0 16109.0 14381.0 25.0 141.0 35.0 16010.0 306.0 629.0 2079.0
MA0047.4_rc_shift4 (FOXA2_rc)				; oligos_6nt_mkv3_m4 versus MA0047.4_rc (FOXA2_rc); m=23/42; ncol2=8; w=-1; offset=-1; strand=R; shift=4; score=0.482869; ----TGTTTACw---- ; cor=; Ncor= a 0 0 0 0 9418.0 59170.0 7805.0 10179.0 6283.0 254489.0 4144.0 117443.0 0 0 0 0 c 0 0 0 0 2984.0 3603.0 2805.0 6484.0 2641.0 1890.0 236311.0 38538.0 0 0 0 0 g 0 0 0 0 3086.0 196969.0 3329.0 22429.0 9424.0 2037.0 2928.0 12432.0 0 0 0 0 t 0 0 0 0 246665.0 2411.0 248214.0 223061.0 243805.0 3737.0 18770.0 93740.0 0 0 0 0
MA0042.2_rc_shift4 (FOXI1_rc)				; oligos_6nt_mkv3_m4 versus MA0042.2_rc (FOXI1_rc); m=24/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.435922; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 0.0 810.0 66.0 0.0 0.0 5175.0 0.0 0 0 0 0 0 c 0 0 0 0 25.0 48.0 29.0 0.0 37.0 35.0 5175.0 0 0 0 0 0 g 0 0 0 0 12.0 5175.0 23.0 23.0 540.0 60.0 39.0 0 0 0 0 0 t 0 0 0 0 5175.0 157.0 5175.0 5175.0 5175.0 74.0 618.0 0 0 0 0 0
MA1683.2_rc_shift4 (FOXA3_rc)				; oligos_6nt_mkv3_m4 versus MA1683.2_rc (FOXA3_rc); m=25/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.434997; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 1838.0 7272.0 984.0 978.0 1143.0 46586.0 2596.0 0 0 0 0 0 c 0 0 0 0 614.0 1205.0 934.0 977.0 636.0 690.0 40396.0 0 0 0 0 0 g 0 0 0 0 933.0 39509.0 973.0 3883.0 1980.0 903.0 1464.0 0 0 0 0 0 t 0 0 0 0 45552.0 951.0 46046.0 43099.0 45178.0 758.0 4481.0 0 0 0 0 0
MA0031.2_rc_shift4 (FOXD1_rc)				; oligos_6nt_mkv3_m4 versus MA0031.2_rc (FOXD1_rc); m=26/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.433755; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 0.0 1.0 0.0 0.0 0.0 20.0 1.0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 1.0 0.0 0.0 0.0 17.0 0 0 0 0 0 g 0 0 0 0 0.0 18.0 1.0 0.0 1.0 0.0 1.0 0 0 0 0 0 t 0 0 0 0 20.0 1.0 18.0 20.0 19.0 0.0 1.0 0 0 0 0 0
MA0019.2_rc_shift3 (Ddit3::Cebpa_rc)				; oligos_6nt_mkv3_m4 versus MA0019.2_rc (Ddit3::Cebpa_rc); m=27/42; ncol2=10; w=-2; offset=-2; strand=R; shift=3; score=0.433034; ---ggkATTGCAy--- ; cor=; Ncor= a 0 0 0 7.0 3.0 3.0 33.0 0.0 0.0 2.0 1.0 38.0 3.0 0 0 0 c 0 0 0 6.0 9.0 5.0 0.0 1.0 0.0 0.0 38.0 0.0 15.0 0 0 0 g 0 0 0 26.0 23.0 17.0 6.0 2.0 1.0 33.0 0.0 1.0 3.0 0 0 0 t 0 0 0 0.0 4.0 14.0 0.0 36.0 38.0 4.0 0.0 0.0 18.0 0 0 0
MA0481.4_rc_shift4 (FOXP1_rc)				; oligos_6nt_mkv3_m4 versus MA0481.4_rc (FOXP1_rc); m=28/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.432427; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 3609.0 10795.0 2069.0 2585.0 1947.0 71862.0 3111.0 0 0 0 0 0 c 0 0 0 0 749.0 1493.0 1132.0 1830.0 1073.0 920.0 59571.0 0 0 0 0 0 g 0 0 0 0 1904.0 61094.0 1487.0 5067.0 2095.0 727.0 1573.0 0 0 0 0 0 t 0 0 0 0 68456.0 1336.0 70030.0 65236.0 69603.0 1209.0 10463.0 0 0 0 0 0
MA2117.1_rc_shift4 (FOXP4_rc)				; oligos_6nt_mkv3_m4 versus MA2117.1_rc (FOXP4_rc); m=29/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.427493; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 776.0 2446.0 418.0 356.0 466.0 19792.0 1294.0 0 0 0 0 0 c 0 0 0 0 218.0 493.0 550.0 368.0 534.0 539.0 17315.0 0 0 0 0 0 g 0 0 0 0 443.0 18349.0 419.0 1330.0 1545.0 793.0 834.0 0 0 0 0 0 t 0 0 0 0 20230.0 379.0 20280.0 19613.0 19122.0 543.0 2224.0 0 0 0 0 0
MA0850.1_rc_shift4 (FOXP3_rc)				; oligos_6nt_mkv3_m4 versus MA0850.1_rc (FOXP3_rc); m=30/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.427139; ----TGTTTAy----- ; cor=; Ncor= a 0 0 0 0 0.0 39.0 0.0 8.0 31.0 211.0 0.0 0 0 0 0 0 c 0 0 0 0 18.0 32.0 49.0 9.0 0.0 0.0 137.0 0 0 0 0 0 g 0 0 0 0 0.0 211.0 15.0 0.0 0.0 52.0 0.0 0 0 0 0 0 t 0 0 0 0 211.0 0.0 211.0 211.0 211.0 20.0 74.0 0 0 0 0 0
MA1103.3_rc_shift4 (FOXK2_rc)				; oligos_6nt_mkv3_m4 versus MA1103.3_rc (FOXK2_rc); m=31/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.425366; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 505.0 1472.0 365.0 565.0 341.0 15782.0 694.0 0 0 0 0 0 c 0 0 0 0 170.0 426.0 391.0 436.0 148.0 327.0 12737.0 0 0 0 0 0 g 0 0 0 0 295.0 14282.0 330.0 1291.0 277.0 210.0 551.0 0 0 0 0 0 t 0 0 0 0 15709.0 499.0 15593.0 14387.0 15913.0 360.0 2697.0 0 0 0 0 0
MA0157.4_rc_shift4 (Foxo3_rc)				; oligos_6nt_mkv3_m4 versus MA0157.4_rc (Foxo3_rc); m=32/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.424008; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 823.0 1911.0 414.0 488.0 376.0 20732.0 650.0 0 0 0 0 0 c 0 0 0 0 361.0 361.0 464.0 333.0 328.0 1199.0 19202.0 0 0 0 0 0 g 0 0 0 0 587.0 21237.0 483.0 803.0 968.0 435.0 590.0 0 0 0 0 0 t 0 0 0 0 22141.0 403.0 22551.0 22288.0 22240.0 1546.0 3470.0 0 0 0 0 0
MA0852.3_rc_shift4 (FOXK1_rc)				; oligos_6nt_mkv3_m4 versus MA0852.3_rc (FOXK1_rc); m=33/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.42372; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 13.0 76.0 11.0 9.0 6.0 947.0 17.0 0 0 0 0 0 c 0 0 0 0 12.0 12.0 10.0 11.0 10.0 44.0 868.0 0 0 0 0 0 g 0 0 0 0 16.0 958.0 13.0 37.0 37.0 5.0 28.0 0 0 0 0 0 t 0 0 0 0 1015.0 10.0 1022.0 999.0 1003.0 60.0 143.0 0 0 0 0 0
MA0480.3_rc_shift4 (Foxo1_rc)				; oligos_6nt_mkv3_m4 versus MA0480.3_rc (Foxo1_rc); m=34/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.419173; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 354.0 757.0 249.0 220.0 296.0 11591.0 554.0 0 0 0 0 0 c 0 0 0 0 153.0 356.0 508.0 384.0 478.0 1025.0 11670.0 0 0 0 0 0 g 0 0 0 0 277.0 12710.0 387.0 849.0 934.0 555.0 481.0 0 0 0 0 0 t 0 0 0 0 13332.0 293.0 12972.0 12663.0 12408.0 945.0 1411.0 0 0 0 0 0
MA0848.1_rc_shift4 (FOXO4_rc)				; oligos_6nt_mkv3_m4 versus MA0848.1_rc (FOXO4_rc); m=35/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.416778; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 40.0 958.0 10.0 20.0 20.0 5378.0 0.0 0 0 0 0 0 c 0 0 0 0 10.0 33.0 90.0 19.0 32.0 123.0 5378.0 0 0 0 0 0 g 0 0 0 0 10.0 5378.0 0.0 146.0 1259.0 69.0 13.0 0 0 0 0 0 t 0 0 0 0 5378.0 58.0 5378.0 5378.0 5378.0 345.0 1669.0 0 0 0 0 0
MA0849.1_rc_shift4 (FOXO6_rc)				; oligos_6nt_mkv3_m4 versus MA0849.1_rc (FOXO6_rc); m=36/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.414193; ----TGTTTAC----- ; cor=; Ncor= a 0 0 0 0 0.0 385.0 0.0 26.0 0.0 7025.0 0.0 0 0 0 0 0 c 0 0 0 0 13.0 31.0 0.0 0.0 7.0 32.0 7025.0 0 0 0 0 0 g 0 0 0 0 0.0 7025.0 0.0 195.0 1147.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 7025.0 0.0 7025.0 7025.0 7025.0 154.0 1445.0 0 0 0 0 0
MA0033.2_rc_shift4 (FOXL1_rc)				; oligos_6nt_mkv3_m4 versus MA0033.2_rc (FOXL1_rc); m=37/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.40833; ----TGTTTAy----- ; cor=; Ncor= a 0 0 0 0 17.0 1057.0 0.0 15.0 0.0 4780.0 140.0 0 0 0 0 0 c 0 0 0 0 0.0 0.0 50.0 0.0 57.0 0.0 2678.0 0 0 0 0 0 g 0 0 0 0 54.0 3723.0 82.0 38.0 628.0 416.0 13.0 0 0 0 0 0 t 0 0 0 0 4780.0 0.0 4780.0 4780.0 4780.0 10.0 2102.0 0 0 0 0 0
MA0624.3_rc_shift6 (Nfatc1_rc)				; oligos_6nt_mkv3_m4 versus MA0624.3_rc (Nfatc1_rc); m=38/42; ncol2=6; w=0; offset=1; strand=R; shift=6; score=0.406508; ------TTTCCA---- ; cor=; Ncor= a 0 0 0 0 0 0 124.0 39.0 54.0 55.0 17.0 5771.0 0 0 0 0 c 0 0 0 0 0 0 43.0 32.0 27.0 6058.0 6106.0 65.0 0 0 0 0 g 0 0 0 0 0 0 77.0 13.0 30.0 16.0 13.0 227.0 0 0 0 0 t 0 0 0 0 0 0 5947.0 6107.0 6080.0 62.0 55.0 128.0 0 0 0 0
MA0593.2_rc_shift3 (FOXP2_rc)				; oligos_6nt_mkv3_m4 versus MA0593.2_rc (FOXP2_rc); m=39/42; ncol2=9; w=-2; offset=-2; strand=R; shift=3; score=0.404358; ---yTGTTTACw---- ; cor=; Ncor= a 0 0 0 22.0 0.0 9.0 0.0 0.0 0.0 707.0 0.0 277.0 0 0 0 0 c 0 0 0 293.0 0.0 0.0 0.0 0.0 0.0 0.0 606.0 142.0 0 0 0 0 g 0 0 0 154.0 0.0 757.0 0.0 0.0 0.0 0.0 0.0 7.0 0 0 0 0 t 0 0 0 297.0 766.0 0.0 766.0 766.0 766.0 59.0 160.0 340.0 0 0 0 0
MA0041.3_rc_shift0 (FOXD3_rc)				; oligos_6nt_mkv3_m4 versus MA0041.3_rc (FOXD3_rc); m=40/42; ncol2=14; w=-5; offset=-5; strand=R; shift=0; score=0.403346; tGTTTRTTTdywtw-- ; cor=; Ncor= a 47.0 30.0 35.0 11.0 7.0 128.0 2.0 7.0 2.0 171.0 10.0 81.0 22.0 85.0 0 0 c 30.0 13.0 20.0 8.0 2.0 0.0 7.0 0.0 1.0 8.0 115.0 45.0 52.0 13.0 0 0 g 20.0 171.0 17.0 11.0 4.0 43.0 1.0 8.0 37.0 109.0 17.0 45.0 17.0 22.0 0 0 t 125.0 13.0 171.0 171.0 171.0 0.0 171.0 171.0 171.0 99.0 56.0 91.0 120.0 86.0 0 0
MA1478.2_shift6 (DMRTA2)				; oligos_6nt_mkv3_m4 versus MA1478.2 (DMRTA2); m=41/42; ncol2=6; w=0; offset=1; strand=D; shift=6; score=0.402882; ------GwTACA---- ; cor=; Ncor= a 0 0 0 0 0 0 0.0 727.0 578.0 1710.0 0.0 1710.0 0 0 0 0 c 0 0 0 0 0 0 1.0 527.0 147.0 9.0 1710.0 23.0 0 0 0 0 g 0 0 0 0 0 0 1710.0 10.0 29.0 71.0 0.0 78.0 0 0 0 0 t 0 0 0 0 0 0 6.0 983.0 1710.0 13.0 3.0 261.0 0 0 0 0
MA1606.2_rc_shift4 (Foxf1_rc)				; oligos_6nt_mkv3_m4 versus MA1606.2_rc (Foxf1_rc); m=42/42; ncol2=7; w=-1; offset=-1; strand=R; shift=4; score=0.401446; ----TGTTTAy----- ; cor=; Ncor= a 0 0 0 0 1916.0 4187.0 831.0 2538.0 903.0 57368.0 3653.0 0 0 0 0 0 c 0 0 0 0 443.0 522.0 1067.0 811.0 445.0 1158.0 33599.0 0 0 0 0 0 g 0 0 0 0 745.0 54394.0 475.0 2249.0 899.0 446.0 3754.0 0 0 0 0 0 t 0 0 0 0 56436.0 437.0 57167.0 53942.0 57293.0 568.0 18534.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m5_shift3 (oligos_6nt_mkv3_m5)				; oligos_6nt_mkv3_m5; m=0 (reference); ncol1=14; shift=3; ncol=17; ---amaAAACAAAGcma ; Alignment reference a 0 0 0 265 218 421 586 628 671 13 688 646 649 124 171 263 273 c 0 0 0 119 225 95 25 34 9 643 10 30 16 62 335 187 152 g 0 0 0 178 148 95 24 29 28 32 8 25 24 492 127 139 151 t 0 0 0 155 126 106 82 26 9 29 11 16 28 39 84 128 141
MA0515.1_rc_shift5 (Sox6_rc)				; oligos_6nt_mkv3_m5 versus MA0515.1_rc (Sox6_rc); m=1/32; ncol2=10; w=0; offset=2; strand=R; shift=5; score=0.587115; -----rrrACAAwGg-- ; cor=; Ncor= a 0 0 0 0 0 128.0 133.0 129.0 249.0 0.0 249.0 249.0 88.0 28.0 56.0 0 0 c 0 0 0 0 0 31.0 0.0 5.0 0.0 249.0 0.0 0.0 0.0 0.0 50.0 0 0 g 0 0 0 0 0 76.0 112.0 115.0 0.0 0.0 0.0 0.0 0.0 221.0 139.0 0 0 t 0 0 0 0 0 14.0 4.0 0.0 0.0 0.0 0.0 0.0 161.0 0.0 4.0 0 0
MA0867.3_shift7 (SOX4)				; oligos_6nt_mkv3_m5 versus MA0867.3 (SOX4); m=2/32; ncol2=8; w=0; offset=4; strand=D; shift=7; score=0.536403; -------aACAAwGr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 5582.0 5582.0 0.0 5582.0 5582.0 5582.0 1018.0 2093.0 0 0 c 0 0 0 0 0 0 0 951.0 0.0 5582.0 1.0 6.0 120.0 64.0 1422.0 0 0 g 0 0 0 0 0 0 0 2047.0 0.0 37.0 6.0 11.0 50.0 5582.0 3489.0 0 0 t 0 0 0 0 0 0 0 431.0 9.0 33.0 0.0 0.0 2719.0 83.0 174.0 0 0
MA0041.3_shift1 (FOXD3)				; oligos_6nt_mkv3_m5 versus MA0041.3 (FOXD3); m=3/32; ncol2=14; w=-2; offset=-2; strand=D; shift=1; score=0.526326; -wawrhAAAYAAACa-- ; cor=; Ncor= a 0 86.0 120.0 91.0 56.0 99.0 171.0 171.0 171.0 0.0 171.0 171.0 171.0 13.0 125.0 0 0 c 0 22.0 17.0 45.0 17.0 109.0 37.0 8.0 1.0 43.0 4.0 11.0 17.0 171.0 20.0 0 0 g 0 13.0 52.0 45.0 115.0 8.0 1.0 0.0 7.0 0.0 2.0 8.0 20.0 13.0 30.0 0 0 t 0 85.0 22.0 81.0 10.0 171.0 2.0 7.0 2.0 128.0 7.0 11.0 35.0 30.0 47.0 0 0
MA0851.2_shift4 (Foxj3)				; oligos_6nt_mkv3_m5 versus MA0851.2 (Foxj3); m=4/32; ncol2=9; w=0; offset=1; strand=D; shift=4; score=0.523643; ----RTAAACAAw---- ; cor=; Ncor= a 0 0 0 0 30.0 1.0 91.0 96.0 99.0 0.0 99.0 79.0 57.0 0 0 0 0 c 0 0 0 0 1.0 2.0 8.0 2.0 0.0 81.0 0.0 7.0 9.0 0 0 0 0 g 0 0 0 0 68.0 0.0 0.0 0.0 0.0 0.0 0.0 6.0 7.0 0 0 0 0 t 0 0 0 0 0.0 97.0 0.0 3.0 1.0 18.0 1.0 9.0 27.0 0 0 0 0
MA0078.3_shift5 (Sox17)				; oligos_6nt_mkv3_m5 versus MA0078.3 (Sox17); m=5/32; ncol2=10; w=0; offset=2; strand=D; shift=5; score=0.507936; -----agAACAATGG-- ; cor=; Ncor= a 0 0 0 0 0 7836.0 2720.0 8708.0 11818.0 271.0 11906.0 11634.0 1005.0 1324.0 1224.0 0 0 c 0 0 0 0 0 957.0 885.0 1111.0 124.0 11241.0 140.0 258.0 138.0 251.0 1012.0 0 0 g 0 0 0 0 0 1889.0 6638.0 1561.0 163.0 490.0 105.0 281.0 189.0 10241.0 9181.0 0 0 t 0 0 0 0 0 1605.0 2044.0 907.0 182.0 285.0 136.0 114.0 10955.0 471.0 870.0 0 0
MA0593.2_shift3 (FOXP2)				; oligos_6nt_mkv3_m5 versus MA0593.2 (FOXP2); m=6/32; ncol2=9; w=0; offset=0; strand=D; shift=3; score=0.503943; ---wGTAAACAr----- ; cor=; Ncor= a 0 0 0 340.0 160.0 59.0 766.0 766.0 766.0 0.0 766.0 297.0 0 0 0 0 0 c 0 0 0 7.0 0.0 0.0 0.0 0.0 0.0 757.0 0.0 154.0 0 0 0 0 0 g 0 0 0 142.0 606.0 0.0 0.0 0.0 0.0 0.0 0.0 293.0 0 0 0 0 0 t 0 0 0 277.0 0.0 707.0 0.0 0.0 0.0 9.0 0.0 22.0 0 0 0 0 0
MA0030.2_shift3 (FOXF2)				; oligos_6nt_mkv3_m5 versus MA0030.2 (FOXF2); m=7/32; ncol2=9; w=0; offset=0; strand=D; shift=3; score=0.503562; ---sRTAAACAa----- ; cor=; Ncor= a 0 0 0 3.0 7.0 0.0 27.0 27.0 27.0 0.0 27.0 16.0 0 0 0 0 0 c 0 0 0 11.0 0.0 0.0 0.0 0.0 0.0 25.0 0.0 4.0 0 0 0 0 0 g 0 0 0 8.0 20.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 0 0 0 0 0 t 0 0 0 0.0 0.0 27.0 0.0 0.0 0.0 2.0 0.0 5.0 0 0 0 0 0
MA0869.3_shift6 (Sox11)				; oligos_6nt_mkv3_m5 versus MA0869.3 (Sox11); m=8/32; ncol2=8; w=0; offset=3; strand=D; shift=6; score=0.494011; ------GAACAAAG--- ; cor=; Ncor= a 0 0 0 0 0 0 1014.0 7912.0 9856.0 119.0 10020.0 9676.0 9276.0 506.0 0 0 0 c 0 0 0 0 0 0 764.0 766.0 100.0 9471.0 108.0 264.0 61.0 148.0 0 0 0 g 0 0 0 0 0 0 8063.0 1298.0 211.0 501.0 49.0 248.0 233.0 9486.0 0 0 0 t 0 0 0 0 0 0 407.0 272.0 81.0 157.0 71.0 60.0 678.0 108.0 0 0 0
MA1603.2_shift7 (Dmrt1)				; oligos_6nt_mkv3_m5 versus MA1603.2 (Dmrt1); m=9/32; ncol2=9; w=0; offset=4; strand=D; shift=7; score=0.48193; -------tACAAWGTa- ; cor=; Ncor= a 0 0 0 0 0 0 0 3915.0 17933.0 211.0 17489.0 15568.0 12433.0 727.0 547.0 10367.0 0 c 0 0 0 0 0 0 0 1228.0 69.0 17633.0 110.0 482.0 205.0 185.0 161.0 1233.0 0 g 0 0 0 0 0 0 0 918.0 82.0 139.0 104.0 456.0 322.0 17032.0 200.0 2521.0 0 t 0 0 0 0 0 0 0 12234.0 211.0 312.0 592.0 1789.0 5335.0 351.0 17387.0 4174.0 0
MA0614.1_shift4 (Foxj2)				; oligos_6nt_mkv3_m5 versus MA0614.1 (Foxj2); m=10/32; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.472946; ----rTAAACAa----- ; cor=; Ncor= a 0 0 0 0 461.0 50.0 795.0 977.0 999.0 0.0 999.0 593.0 0 0 0 0 0 c 0 0 0 0 0.0 25.0 205.0 0.0 0.0 954.0 0.0 125.0 0 0 0 0 0 g 0 0 0 0 538.0 0.0 0.0 0.0 0.0 0.0 0.0 125.0 0 0 0 0 0 t 0 0 0 0 0.0 924.0 0.0 22.0 0.0 46.0 0.0 156.0 0 0 0 0 0
MA1487.3_shift0 (FOXE1)				; oligos_6nt_mkv3_m5 versus MA1487.3 (FOXE1); m=11/32; ncol2=12; w=-3; offset=-3; strand=D; shift=0; score=0.464897; yTAARyAAACAa----- ; cor=; Ncor= a 86.0 581.0 3126.0 2547.0 2255.0 587.0 3126.0 3126.0 3126.0 0.0 3126.0 2026.0 0 0 0 0 0 c 1646.0 43.0 28.0 113.0 117.0 1062.0 362.0 90.0 0.0 3126.0 32.0 392.0 0 0 0 0 0 g 57.0 0.0 402.0 116.0 871.0 17.0 0.0 0.0 23.0 0.0 18.0 258.0 0 0 0 0 0 t 1479.0 2545.0 43.0 579.0 27.0 2064.0 20.0 53.0 9.0 85.0 110.0 450.0 0 0 0 0 0
MA1489.1_shift4 (FOXN3)				; oligos_6nt_mkv3_m5 versus MA1489.1 (FOXN3); m=12/32; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.463516; ----GTAAACAA----- ; cor=; Ncor= a 0 0 0 0 9.0 9.0 971.0 971.0 971.0 9.0 971.0 971.0 0 0 0 0 0 c 0 0 0 0 9.0 9.0 9.0 9.0 9.0 971.0 9.0 9.0 0 0 0 0 0 g 0 0 0 0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 0 t 0 0 0 0 9.0 971.0 9.0 9.0 9.0 9.0 9.0 9.0 0 0 0 0 0
MA0613.1_shift4 (FOXG1)				; oligos_6nt_mkv3_m5 versus MA0613.1 (FOXG1); m=13/32; ncol2=8; w=0; offset=1; strand=D; shift=4; score=0.457121; ----rTAAACAw----- ; cor=; Ncor= a 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 0 0 0 0 0 c 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 0 0 0 0 0 g 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 0 0 0 0 0 t 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0 0 0 0 0 0
MA0846.2_shift1 (FOXC2)				; oligos_6nt_mkv3_m5 versus MA0846.2 (FOXC2); m=14/32; ncol2=11; w=-2; offset=-2; strand=D; shift=1; score=0.452657; -wAwrTAAAYAw----- ; cor=; Ncor= a 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 0 0 0 0 0 c 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 0 0 0 0 0 g 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 0 0 0 0 0 t 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 0 0 0 0 0
MA2118.1_shift3 (FOXS1)				; oligos_6nt_mkv3_m5 versus MA2118.1 (FOXS1); m=15/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.442981; ---tGTAAACA------ ; cor=; Ncor= a 0 0 0 66.0 36.0 13.0 345.0 345.0 361.0 9.0 356.0 0 0 0 0 0 0 c 0 0 0 20.0 8.0 15.0 15.0 16.0 3.0 322.0 5.0 0 0 0 0 0 0 g 0 0 0 49.0 323.0 12.0 5.0 8.0 5.0 7.0 3.0 0 0 0 0 0 0 t 0 0 0 239.0 7.0 334.0 9.0 5.0 5.0 36.0 10.0 0 0 0 0 0 0
MA0087.3_shift7 (Sox5)				; oligos_6nt_mkv3_m5 versus MA0087.3 (Sox5); m=16/32; ncol2=8; w=0; offset=4; strand=D; shift=7; score=0.435897; -------AACAATGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 104.0 122.0 0.0 120.0 114.0 6.0 20.0 13.0 0 0 c 0 0 0 0 0 0 0 4.0 0.0 120.0 2.0 5.0 3.0 0.0 14.0 0 0 g 0 0 0 0 0 0 0 12.0 1.0 2.0 2.0 4.0 1.0 101.0 90.0 0 0 t 0 0 0 0 0 0 0 4.0 1.0 2.0 0.0 1.0 114.0 3.0 7.0 0 0
MA1125.2_shift5 (ZNF384)				; oligos_6nt_mkv3_m5 versus MA1125.2 (ZNF384); m=17/32; ncol2=8; w=0; offset=2; strand=D; shift=5; score=0.43036; -----AAAAAAaa---- ; cor=; Ncor= a 0 0 0 0 0 30354.0 30191.0 30072.0 30252.0 30202.0 30406.0 20322.0 18916.0 0 0 0 0 c 0 0 0 0 0 7.0 35.0 21.0 13.0 26.0 6.0 2908.0 3963.0 0 0 0 0 g 0 0 0 0 0 13.0 19.0 26.0 15.0 14.0 0.0 2767.0 2898.0 0 0 0 0 t 0 0 0 0 0 59.0 188.0 314.0 153.0 191.0 21.0 4436.0 4656.0 0 0 0 0
MA0047.4_shift3 (FOXA2)				; oligos_6nt_mkv3_m5 versus MA0047.4 (FOXA2); m=18/32; ncol2=8; w=0; offset=0; strand=D; shift=3; score=0.428007; ---wGTAAACA------ ; cor=; Ncor= a 0 0 0 93740.0 18770.0 3737.0 243805.0 223061.0 248214.0 2411.0 246665.0 0 0 0 0 0 0 c 0 0 0 12432.0 2928.0 2037.0 9424.0 22429.0 3329.0 196969.0 3086.0 0 0 0 0 0 0 g 0 0 0 38538.0 236311.0 1890.0 2641.0 6484.0 2805.0 3603.0 2984.0 0 0 0 0 0 0 t 0 0 0 117443.0 4144.0 254489.0 6283.0 10179.0 7805.0 59170.0 9418.0 0 0 0 0 0 0
MA0084.2_shift6 (SRY)				; oligos_6nt_mkv3_m5 versus MA0084.2 (SRY); m=19/32; ncol2=7; w=0; offset=3; strand=D; shift=6; score=0.426833; ------waACAAw---- ; cor=; Ncor= a 0 0 0 0 0 0 15.0 18.0 25.0 0.0 28.0 27.0 7.0 0 0 0 0 c 0 0 0 0 0 0 0.0 3.0 0.0 26.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 0 0 3.0 3.0 0.0 0.0 0.0 1.0 2.0 0 0 0 0 t 0 0 0 0 0 0 10.0 4.0 3.0 2.0 0.0 0.0 19.0 0 0 0 0
MA0442.3_shift8 (SOX10)				; oligos_6nt_mkv3_m5 versus MA0442.3 (SOX10); m=20/32; ncol2=6; w=0; offset=5; strand=D; shift=8; score=0.423558; --------ACAAAG--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2023.0 3.0 2029.0 1968.0 1959.0 10.0 0 0 0 c 0 0 0 0 0 0 0 0 4.0 1989.0 7.0 28.0 23.0 13.0 0 0 0 g 0 0 0 0 0 0 0 0 3.0 11.0 7.0 20.0 12.0 2012.0 0 0 0 t 0 0 0 0 0 0 0 0 25.0 52.0 12.0 39.0 61.0 20.0 0 0 0
MA0768.3_rc_shift7 (Lef1_rc)				; oligos_6nt_mkv3_m5 versus MA0768.3_rc (Lef1_rc); m=21/32; ncol2=8; w=0; offset=4; strand=R; shift=7; score=0.418384; -------ATCAAAGG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 872.0 41.0 51.0 1030.0 976.0 1036.0 45.0 90.0 0 0 c 0 0 0 0 0 0 0 51.0 25.0 882.0 15.0 39.0 14.0 21.0 130.0 0 0 g 0 0 0 0 0 0 0 28.0 28.0 75.0 18.0 47.0 19.0 989.0 788.0 0 0 t 0 0 0 0 0 0 0 130.0 987.0 73.0 18.0 19.0 12.0 26.0 73.0 0 0
MA1152.2_rc_shift8 (SOX15_rc)				; oligos_6nt_mkv3_m5 versus MA1152.2_rc (SOX15_rc); m=22/32; ncol2=7; w=0; offset=5; strand=R; shift=8; score=0.416936; --------ACAAwrr-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 971.0 5.0 994.0 988.0 362.0 501.0 267.0 0 0 c 0 0 0 0 0 0 0 0 3.0 890.0 2.0 6.0 5.0 26.0 147.0 0 0 g 0 0 0 0 0 0 0 0 2.0 21.0 2.0 3.0 3.0 412.0 554.0 0 0 t 0 0 0 0 0 0 0 0 24.0 83.0 3.0 3.0 631.0 62.0 32.0 0 0
MA1606.2_shift4 (Foxf1)				; oligos_6nt_mkv3_m5 versus MA1606.2 (Foxf1); m=23/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.413816; ----rTAAACA------ ; cor=; Ncor= a 0 0 0 0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 0 0 0 0 0 0 c 0 0 0 0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 0 0 0 0 0 0 g 0 0 0 0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 0 0 0 0 0 0 t 0 0 0 0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 0 0 0 0 0 0
MA0850.1_shift4 (FOXP3)				; oligos_6nt_mkv3_m5 versus MA0850.1 (FOXP3); m=24/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.411593; ----rTAAACA------ ; cor=; Ncor= a 0 0 0 0 74.0 20.0 211.0 211.0 211.0 0.0 211.0 0 0 0 0 0 0 c 0 0 0 0 0.0 52.0 0.0 0.0 15.0 211.0 0.0 0 0 0 0 0 0 g 0 0 0 0 137.0 0.0 0.0 9.0 49.0 32.0 18.0 0 0 0 0 0 0 t 0 0 0 0 0.0 211.0 31.0 8.0 0.0 39.0 0.0 0 0 0 0 0 0
MA0033.2_shift4 (FOXL1)				; oligos_6nt_mkv3_m5 versus MA0033.2 (FOXL1); m=25/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.40967; ----rTAAACA------ ; cor=; Ncor= a 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 0 0 0 c 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 0 0 0 g 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 0 0 0 t 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0 0 0 0
MA0480.3_shift4 (Foxo1)				; oligos_6nt_mkv3_m5 versus MA0480.3 (Foxo1); m=26/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.40839; ----GTAAACA------ ; cor=; Ncor= a 0 0 0 0 1411.0 945.0 12408.0 12663.0 12972.0 293.0 13332.0 0 0 0 0 0 0 c 0 0 0 0 481.0 555.0 934.0 849.0 387.0 12710.0 277.0 0 0 0 0 0 0 g 0 0 0 0 11670.0 1025.0 478.0 384.0 508.0 356.0 153.0 0 0 0 0 0 0 t 0 0 0 0 554.0 11591.0 296.0 220.0 249.0 757.0 354.0 0 0 0 0 0 0
MA0157.4_shift4 (Foxo3)				; oligos_6nt_mkv3_m5 versus MA0157.4 (Foxo3); m=27/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.408337; ----GTAAACA------ ; cor=; Ncor= a 0 0 0 0 3470.0 1546.0 22240.0 22288.0 22551.0 403.0 22141.0 0 0 0 0 0 0 c 0 0 0 0 590.0 435.0 968.0 803.0 483.0 21237.0 587.0 0 0 0 0 0 0 g 0 0 0 0 19202.0 1199.0 328.0 333.0 464.0 361.0 361.0 0 0 0 0 0 0 t 0 0 0 0 650.0 20732.0 376.0 488.0 414.0 1911.0 823.0 0 0 0 0 0 0
MA0868.3_shift7 (SOX8)				; oligos_6nt_mkv3_m5 versus MA0868.3 (SOX8); m=28/32; ncol2=7; w=0; offset=4; strand=D; shift=7; score=0.408124; -------AACAATr--- ; cor=; Ncor= a 0 0 0 0 0 0 0 1827.0 1827.0 3.0 1827.0 1827.0 273.0 1356.0 0 0 0 c 0 0 0 0 0 0 0 151.0 0.0 1827.0 0.0 43.0 36.0 208.0 0 0 0 g 0 0 0 0 0 0 0 263.0 0.0 35.0 0.0 0.0 20.0 1827.0 0 0 0 t 0 0 0 0 0 0 0 222.0 45.0 70.0 16.0 36.0 1827.0 287.0 0 0 0
MA0852.3_shift4 (FOXK1)				; oligos_6nt_mkv3_m5 versus MA0852.3 (FOXK1); m=29/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.407792; ----GTAAACA------ ; cor=; Ncor= a 0 0 0 0 143.0 60.0 1003.0 999.0 1022.0 10.0 1015.0 0 0 0 0 0 0 c 0 0 0 0 28.0 5.0 37.0 37.0 13.0 958.0 16.0 0 0 0 0 0 0 g 0 0 0 0 868.0 44.0 10.0 11.0 10.0 12.0 12.0 0 0 0 0 0 0 t 0 0 0 0 17.0 947.0 6.0 9.0 11.0 76.0 13.0 0 0 0 0 0 0
MA1563.2_shift7 (SOX18)				; oligos_6nt_mkv3_m5 versus MA1563.2 (SOX18); m=30/32; ncol2=8; w=0; offset=4; strand=D; shift=7; score=0.405196; -------aACAATdv-- ; cor=; Ncor= a 0 0 0 0 0 0 0 424.0 424.0 0.0 424.0 424.0 0.0 203.0 382.0 0 0 c 0 0 0 0 0 0 0 81.0 0.0 424.0 0.0 35.0 0.0 0.0 551.0 0 0 g 0 0 0 0 0 0 0 170.0 0.0 91.0 0.0 17.0 0.0 221.0 424.0 0 0 t 0 0 0 0 0 0 0 34.0 0.0 2.0 0.0 0.0 447.0 228.0 0.0 0 0
MA0077.2_rc_shift7 (SOX9_rc)				; oligos_6nt_mkv3_m5 versus MA0077.2_rc (SOX9_rc); m=31/32; ncol2=8; w=0; offset=4; strand=R; shift=7; score=0.404877; -------AACAATrG-- ; cor=; Ncor= a 0 0 0 0 0 0 0 54.0 59.0 0.0 65.0 71.0 4.0 24.0 9.0 0 0 c 0 0 0 0 0 0 0 6.0 4.0 72.0 4.0 2.0 0.0 6.0 9.0 0 0 g 0 0 0 0 0 0 0 7.0 0.0 2.0 0.0 1.0 1.0 38.0 55.0 0 0 t 0 0 0 0 0 0 0 9.0 13.0 2.0 7.0 2.0 71.0 8.0 3.0 0 0
MA0848.1_shift4 (FOXO4)				; oligos_6nt_mkv3_m5 versus MA0848.1 (FOXO4); m=32/32; ncol2=7; w=0; offset=1; strand=D; shift=4; score=0.404251; ----GTAAACA------ ; cor=; Ncor= a 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 0 0 0 0 c 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 0 0 0 0 g 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 0 0 0 0 t 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv3_m1_shift0 (oligos_6nt_mkv3_m1)				; oligos_6nt_mkv3_m1; m=0 (reference); ncol1=22; shift=0; ncol=22; yryaTwTGCATATGCAwAtryr ; Alignment reference a 86 142 55 241 36 111 17 47 27 397 25 375 20 20 76 370 226 296 59 148 97 131 c 118 78 162 80 88 35 40 16 362 5 21 13 12 25 295 7 62 14 54 69 117 99 g 99 117 69 54 14 62 7 295 25 12 13 21 5 362 16 40 35 88 80 162 78 118 t 131 97 148 59 296 226 370 76 20 20 375 25 397 27 47 17 111 36 241 55 142 86
MA0507.3_rc_shift0 (POU2F2_rc)				; oligos_6nt_mkv3_m1 versus MA0507.3_rc (POU2F2_rc); m=1/5; ncol2=13; w=0; offset=0; strand=R; shift=0; score= 0.509; cTmATTTGCATAw--------- ; cor=; Ncor= a 788.0 1065.0 5505.0 9207.0 8.0 57.0 1929.0 1193.0 111.0 9207.0 0.0 9207.0 3315.0 0 0 0 0 0 0 0 0 0 c 5392.0 851.0 3703.0 35.0 0.0 23.0 0.0 127.0 9207.0 2.0 0.0 4.0 2020.0 0 0 0 0 0 0 0 0 0 g 1301.0 648.0 862.0 8.0 5.0 7.0 0.0 8014.0 0.0 13.0 0.0 100.0 435.0 0 0 0 0 0 0 0 0 0 t 1726.0 6644.0 1399.0 56.0 9207.0 9207.0 7279.0 2.0 0.0 0.0 9207.0 34.0 5892.0 0 0 0 0 0 0 0 0 0
MA0142.1_rc_shift3 (Pou5f1::Sox2_rc)				; oligos_6nt_mkv3_m1 versus MA0142.1_rc (Pou5f1::Sox2_rc); m=2/5; ncol2=15; w=0; offset=3; strand=R; shift=3; score=0.487543; ---aTtTGCATrwsAAwr---- ; cor=; Ncor= a 0 0 0 837.0 53.0 92.0 269.0 196.0 104.0 1332.0 80.0 612.0 907.0 63.0 1231.0 1270.0 701.0 389.0 0 0 0 0 c 0 0 0 207.0 75.0 315.0 30.0 129.0 1239.0 15.0 24.0 186.0 29.0 825.0 79.0 36.0 28.0 66.0 0 0 0 0 g 0 0 0 119.0 33.0 68.0 16.0 1029.0 16.0 5.0 30.0 365.0 18.0 363.0 12.0 50.0 58.0 846.0 0 0 0 0 t 0 0 0 198.0 1200.0 887.0 1050.0 14.0 10.0 17.0 1235.0 206.0 415.0 118.0 47.0 11.0 579.0 63.0 0 0 0 0
MA0784.3_rc_shift8 (POU1F1_rc)				; oligos_6nt_mkv3_m1 versus MA0784.3_rc (POU1F1_rc); m=3/5; ncol2=14; w=0; offset=8; strand=R; shift=8; score=0.456527; --------awTATGCwAATkAG ; cor=; Ncor= a 0 0 0 0 0 0 0 0 3278.0 1804.0 59.0 4127.0 17.0 3.0 16.0 2563.0 4127.0 4127.0 31.0 262.0 3907.0 504.0 c 0 0 0 0 0 0 0 0 384.0 57.0 5.0 0.0 5.0 1.0 3708.0 0.0 2.0 1.0 28.0 192.0 220.0 372.0 g 0 0 0 0 0 0 0 0 702.0 165.0 5.0 3.0 9.0 4127.0 67.0 0.0 13.0 0.0 7.0 1846.0 126.0 3623.0 t 0 0 0 0 0 0 0 0 849.0 2323.0 4127.0 3.0 4127.0 54.0 419.0 1564.0 91.0 0.0 4127.0 2281.0 106.0 131.0
MA0787.1_shift9 (POU3F2)				; oligos_6nt_mkv3_m1 versus MA0787.1 (POU3F2); m=4/5; ncol2=12; w=0; offset=9; strand=D; shift=9; score=0.446048; ---------wTATGCwAATka- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 591.0 163.0 1292.0 28.0 19.0 68.0 688.0 1292.0 1292.0 63.0 137.0 1292.0 0 c 0 0 0 0 0 0 0 0 0 61.0 65.0 16.0 30.0 9.0 1292.0 4.0 16.0 6.0 19.0 165.0 262.0 0 g 0 0 0 0 0 0 0 0 0 171.0 40.0 25.0 12.0 1292.0 153.0 1.0 32.0 0.0 28.0 452.0 261.0 0 t 0 0 0 0 0 0 0 0 0 700.0 1292.0 0.0 1292.0 60.0 372.0 604.0 45.0 13.0 1292.0 840.0 562.0 0
MA0788.1_shift8 (POU3F3)				; oligos_6nt_mkv3_m1 versus MA0788.1 (POU3F3); m=5/5; ncol2=13; w=0; offset=8; strand=D; shift=8; score=0.419029; --------wwTATGCwAATtw- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 576.0 440.0 129.0 1078.0 25.0 22.0 28.0 506.0 1078.0 1078.0 53.0 240.0 536.0 0 c 0 0 0 0 0 0 0 0 75.0 41.0 57.0 11.0 33.0 10.0 1078.0 4.0 11.0 6.0 20.0 141.0 85.0 0 g 0 0 0 0 0 0 0 0 137.0 131.0 64.0 12.0 49.0 1078.0 118.0 1.0 77.0 15.0 12.0 237.0 115.0 0 t 0 0 0 0 0 0 0 0 290.0 637.0 1078.0 30.0 1078.0 86.0 343.0 572.0 79.0 14.0 1078.0 1078.0 542.0 0