RSAT - peak-motifs result

Analysis: Control_150_50 (18/03/2026 16:45)

peak-motifs  -v 1 -title Control_150_50 -i $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.164447_2026-03-18.164447_XyrXpW/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.164447_2026-03-18.164447_XyrXpW

motif discovery
oligos_6nt_mkv1	oligos_6nt_mkv1_m1 assembly: tacacac (sig=1.99; e-value=0.01) RC: gtgtgta oligos_6nt_mkv1_m2 assembly: atatata (sig=1.55; e-value=0.028) RC: tatatat oligos_6nt_mkv1_m3 assembly: ccaggag (sig=1.16; e-value=0.069) RC: ctcctgg oligos_6nt_mkv1_m4 assembly: agagac (sig=0.51; e-value=0.31) RC: gtctct oligos_6nt_mkv1_m5 assembly: gagata (sig=0.20; e-value=0.63) RC: tatctc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv1	oligos_7nt_mkv1_m1 assembly: atacacaca (sig=1.29; e-value=0.051) RC: tgtgtgtat oligos_7nt_mkv1_m2 assembly: gtatatatac (sig=0.43; e-value=0.37) RC: gtatatatac oligos_7nt_mkv1_m3 assembly: gccagga (sig=0.03; e-value=0.93) RC: tcctggc oligos_7nt_mkv1_m4 : (sig=; e-value=1) RC: oligos_7nt_mkv1_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv1_m1	k-mer sig=1.99; evalue=0.01 yayACACACay RTGTGTGTRTR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 4 (8.00%) Max nb of predicted sites per peak: 32  (randfragment_13_Homo_sapiens_GRCh38_chromosome:GRCh38:5:1:181538259:1:101430074:101430223:D) Mean nb of predicted sites per peak: 8.75	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv1_m2	k-mer sig=1.55; evalue=0.028 atATATATAta TATATATATAT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (10.00%) Max nb of predicted sites per peak: 41  (randfragment_13_Homo_sapiens_GRCh38_chromosome:GRCh38:5:1:181538259:1:101430074:101430223:D) Mean nb of predicted sites per peak: 10.20	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv1_m3	k-mer sig=1.16; evalue=0.069 ksCCAGGAgks SMCTCCTGGSM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6 (12.00%) Max nb of predicted sites per peak: 2  (randfragment_29_Homo_sapiens_GRCh38_chromosome:GRCh38:3:1:198295559:1:13102103:13102252:D) Mean nb of predicted sites per peak: 1.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv1_m4	k-mer sig=0.51; evalue=0.31 bcAGAGACrr YYGTCTCTGV	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 9 (18.00%) Max nb of predicted sites per peak: 2  (randfragment_45_Homo_sapiens_GRCh38_chromosome:GRCh38:2:1:242193529:1:18329409:18329558:R) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv1_m5	k-mer sig=0.20; evalue=0.63 gwGAGATAwm KWTATCTCWC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 10 (20.00%) Max nb of predicted sites per peak: 1  (randfragment_8_Homo_sapiens_GRCh38_chromosome:GRCh38:10:1:133797422:1:32325241:32325390:R) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv1_m1	k-mer sig=1.29; evalue=0.051 AyAyAYACACAYA TRTGTGTRTRTRT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (2.00%) Max nb of predicted sites per peak: 51  (randfragment_13_Homo_sapiens_GRCh38_chromosome:GRCh38:5:1:181538259:1:101430074:101430223:D) Mean nb of predicted sites per peak: 51.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv1_m2	k-mer sig=0.43; evalue=0.37 rTrTrTATAYAyAy RTRTRTATAYAYAY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1 (2.00%) Max nb of predicted sites per peak: 58  (randfragment_13_Homo_sapiens_GRCh38_chromosome:GRCh38:5:1:181538259:1:101430074:101430223:D) Mean nb of predicted sites per peak: 58.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_7nt_mkv1_m3	k-mer sig=0.03; evalue=0.93 krGCCAGGAkk MMTCCTGGCYM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 5 (10.00%) Max nb of predicted sites per peak: 2  (randfragment_39_Homo_sapiens_GRCh38_chromosome:GRCh38:3:1:198295559:1:107281745:107281894:R) Mean nb of predicted sites per peak: 1.60	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title Control_150_50 -i $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.164447_2026-03-18.164447_XyrXpW/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.164447_2026-03-18.164447_XyrXpW

Warning: Not a single pattern was found in file tmp/www-data/2026/03/18/peak-motifs.2026-03-18.164447_2026-03-18.164447_XyrXpW/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/03/18/peak-motifs.2026-03-18.164447_2026-03-18.164447_XyrXpW/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab