position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title H1LNC -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab Oligo length 2 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 58 Sum of sequence lengths 6001 Min sequence length 0 Max sequence length 727 Average sequence length 103 Possible positions 5943 Sequences: # length ID 1 56 C11 2 138 C11 3 64 C11 4 82 C11 5 46 C11 6 103 C11 7 112 C11 8 56 C11 9 100 C11 10 62 C11 11 64 C11 12 56 C11 13 50 C11 14 81 C11 15 39 C11 16 72 C11 17 57 C11 18 65 C11 19 135 C11 20 176 C11 21 62 C11 22 70 C11 23 482 C11 24 727 C11 25 411 C11 26 50 C11 27 86 C11 28 69 C11 29 56 C11 30 110 C8 31 146 C8 32 102 C8 33 123 C8 34 86 C2 35 14 C2 36 86 C2 37 63 C2 38 71 C2 39 59 C2 40 70 C2 41 159 C2 42 77 C2 43 60 C1 44 59 C1 45 64 C1 46 68 C1 47 88 C19 48 48 C19 49 82 C19 50 86 C2 51 77 C2 52 94 CX 53 54 CX 54 68 CX 55 138 CX 56 40 C9 57 94 C9 58 88 C9 Oligonucleotide statistics: Total occurrences 5858 Position interval parameters: Position interval 20 Number of windows 38 Total positions 5943 Degrees of freedom 37 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -19 [-379,-360] -369.5 1 4 2 -18 [-359,-340] -349.5 1 20 3 -17 [-339,-320] -329.5 1 20 4 -16 [-319,-300] -309.5 1 20 5 -15 [-299,-280] -289.5 1 20 6 -14 [-279,-260] -269.5 1 20 7 -13 [-259,-240] -249.5 2 22 8 -12 [-239,-220] -229.5 2 40 9 -11 [-219,-200] -209.5 3 46 10 -10 [-199,-180] -189.5 3 60 11 -9 [-179,-160] -169.5 3 60 12 -8 [-159,-140] -149.5 3 60 13 -7 [-139,-120] -129.5 3 60 14 -6 [-119,-100] -109.5 3 60 15 -5 [-99,-80] -89.5 4 68 16 -4 [-79,-60] -69.5 10 144 17 -3 [-59,-40] -49.5 26 311 18 -2 [-39,-20] -29.5 55 849 19 -1 [-19,0] -9.5 58 1148 20 0 [1,20] 10.5 58 1142 21 1 [21,40] 30.5 55 792 22 2 [41,60] 50.5 23 276 23 3 [61,80] 70.5 9 129 24 4 [81,100] 90.5 4 67 25 5 [101,120] 110.5 3 60 26 6 [121,140] 130.5 3 60 27 7 [141,160] 150.5 3 60 28 8 [161,180] 170.5 3 60 29 9 [181,200] 190.5 3 60 30 10 [201,220] 210.5 3 44 31 11 [221,240] 230.5 2 39 32 12 [241,260] 250.5 1 20 33 13 [261,280] 270.5 1 20 34 14 [281,300] 290.5 1 20 35 15 [301,320] 310.5 1 20 36 16 [321,340] 330.5 1 20 37 17 [341,360] 350.5 1 20 38 18 [361,380] 370.5 1 2 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -369.5 occurrences in window 1 [-379,-360] 11 -349.5 occurrences in window 2 [-359,-340] 12 -329.5 occurrences in window 3 [-339,-320] 13 -309.5 occurrences in window 4 [-319,-300] 14 -289.5 occurrences in window 5 [-299,-280] 15 -269.5 occurrences in window 6 [-279,-260] 16 -249.5 occurrences in window 7 [-259,-240] 17 -229.5 occurrences in window 8 [-239,-220] 18 -209.5 occurrences in window 9 [-219,-200] 19 -189.5 occurrences in window 10 [-199,-180] 20 -169.5 occurrences in window 11 [-179,-160] 21 -149.5 occurrences in window 12 [-159,-140] 22 -129.5 occurrences in window 13 [-139,-120] 23 -109.5 occurrences in window 14 [-119,-100] 24 -89.5 occurrences in window 15 [-99,-80] 25 -69.5 occurrences in window 16 [-79,-60] 26 -49.5 occurrences in window 17 [-59,-40] 27 -29.5 occurrences in window 18 [-39,-20] 28 -9.5 occurrences in window 19 [-19,0] 29 10.5 occurrences in window 20 [1,20] 30 30.5 occurrences in window 21 [21,40] 31 50.5 occurrences in window 22 [41,60] 32 70.5 occurrences in window 23 [61,80] 33 90.5 occurrences in window 24 [81,100] 34 110.5 occurrences in window 25 [101,120] 35 130.5 occurrences in window 26 [121,140] 36 150.5 occurrences in window 27 [141,160] 37 170.5 occurrences in window 28 [161,180] 38 190.5 occurrences in window 29 [181,200] 39 210.5 occurrences in window 30 [201,220] 40 230.5 occurrences in window 31 [221,240] 41 250.5 occurrences in window 32 [241,260] 42 270.5 occurrences in window 33 [261,280] 43 290.5 occurrences in window 34 [281,300] 44 310.5 occurrences in window 35 [301,320] 45 330.5 occurrences in window 36 [321,340] 46 350.5 occurrences in window 37 [341,360] 47 370.5 occurrences in window 38 [361,380]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| aa | aa | 559 | 88.4 | 37 | 4.3e-06 | 6.9e-05 | 4.16 | 1 | 0 | 2 | 2 | 0 | 1 | 2 | 1 | 8 | 9 | 11 | 13 | 10 | 7 | 10 | 14 | 20 | 22 | 62 | 94 | 78 | 64 | 35 | 20 | 11 | 10 | 15 | 4 | 11 | 3 | 3 | 3 | 1 | 1 | 3 | 0 | 5 | 4 | 0 |
| gg | gg | 517 | 26.8 | 37 | 8.9e-01 | 14 | -1.15 | 2 | 0 | 0 | 1 | 1 | 1 | 1 | 2 | 1 | 5 | 2 | 3 | 5 | 3 | 2 | 4 | 14 | 28 | 88 | 118 | 109 | 53 | 24 | 10 | 2 | 5 | 1 | 9 | 7 | 6 | 4 | 1 | 1 | 2 | 1 | 2 | 1 | 0 | 0 |
| tt | tt | 367 | 21.6 | 37 | 9.8e-01 | 16 | -1.20 | 3 | 2 | 7 | 1 | 1 | 1 | 0 | 1 | 2 | 1 | 3 | 2 | 4 | 4 | 3 | 7 | 14 | 15 | 58 | 64 | 57 | 27 | 13 | 3 | 10 | 5 | 8 | 4 | 4 | 10 | 9 | 5 | 4 | 0 | 1 | 12 | 2 | 3 | 0 |
| ac | ac | 266 | 20.2 | 37 | 9.9e-01 | 16 | -1.20 | 4 | 1 | 0 | 1 | 2 | 2 | 1 | 2 | 2 | 1 | 2 | 2 | 0 | 3 | 4 | 0 | 2 | 16 | 35 | 44 | 47 | 58 | 12 | 8 | 6 | 3 | 1 | 3 | 1 | 1 | 1 | 1 | 0 | 1 | 0 | 1 | 2 | 0 | 0 |
| ag | ag | 629 | 17.5 | 37 | 1.0e+00 | 16 | -1.20 | 5 | 0 | 2 | 2 | 2 | 3 | 4 | 3 | 8 | 7 | 7 | 9 | 6 | 10 | 4 | 9 | 13 | 38 | 87 | 129 | 120 | 70 | 32 | 19 | 2 | 5 | 3 | 6 | 4 | 6 | 5 | 4 | 2 | 2 | 4 | 0 | 1 | 1 | 0 |
| tg | tg | 464 | 13.4 | 37 | 1.0e+00 | 16 | -1.20 | 6 | 0 | 1 | 1 | 3 | 1 | 1 | 0 | 3 | 2 | 5 | 2 | 6 | 1 | 7 | 2 | 7 | 21 | 72 | 92 | 103 | 71 | 14 | 5 | 5 | 4 | 1 | 7 | 8 | 3 | 3 | 1 | 3 | 2 | 1 | 2 | 1 | 2 | 1 |
| ta | ta | 261 | 11.9 | 37 | 1.0e+00 | 16 | -1.20 | 7 | 0 | 3 | 2 | 0 | 1 | 1 | 0 | 2 | 1 | 5 | 4 | 3 | 5 | 3 | 8 | 9 | 13 | 29 | 35 | 38 | 34 | 14 | 8 | 7 | 6 | 7 | 3 | 6 | 1 | 2 | 7 | 0 | 0 | 2 | 1 | 0 | 1 | 0 |
| ct | ct | 321 | 9.0 | 37 | 1.0e+00 | 16 | -1.20 | 8 | 1 | 0 | 2 | 1 | 1 | 1 | 0 | 2 | 3 | 1 | 0 | 1 | 4 | 4 | 1 | 5 | 16 | 55 | 55 | 74 | 44 | 18 | 3 | 3 | 5 | 1 | 4 | 3 | 2 | 3 | 3 | 3 | 2 | 0 | 0 | 0 | 0 | 0 |
| gc | gc | 350 | 8.9 | 37 | 1.0e+00 | 16 | -1.20 | 9 | 0 | 0 | 1 | 2 | 0 | 2 | 1 | 2 | 6 | 2 | 1 | 2 | 2 | 3 | 4 | 11 | 23 | 47 | 81 | 79 | 45 | 12 | 5 | 1 | 1 | 1 | 1 | 4 | 3 | 1 | 2 | 1 | 2 | 1 | 0 | 0 | 1 | 0 |
| ga | ga | 547 | 8.7 | 37 | 1.0e+00 | 16 | -1.20 | 10 | 0 | 2 | 2 | 2 | 2 | 3 | 3 | 6 | 4 | 6 | 8 | 7 | 9 | 7 | 5 | 11 | 26 | 77 | 112 | 107 | 66 | 24 | 13 | 4 | 6 | 4 | 6 | 3 | 5 | 4 | 1 | 2 | 2 | 2 | 0 | 3 | 2 | 1 |
| cc | cc | 290 | 7.9 | 37 | 1.0e+00 | 16 | -1.20 | 11 | 0 | 0 | 1 | 2 | 0 | 0 | 2 | 0 | 1 | 0 | 2 | 2 | 2 | 0 | 2 | 9 | 21 | 38 | 59 | 64 | 45 | 19 | 7 | 2 | 2 | 1 | 0 | 0 | 4 | 1 | 0 | 0 | 2 | 0 | 0 | 1 | 1 | 0 |
| at | at | 319 | 6.0 | 37 | 1.0e+00 | 16 | -1.20 | 12 | 0 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 0 | 4 | 6 | 8 | 2 | 5 | 7 | 11 | 13 | 41 | 59 | 53 | 44 | 10 | 5 | 7 | 4 | 9 | 3 | 4 | 2 | 1 | 5 | 0 | 0 | 2 | 0 | 1 | 4 | 0 |
| ca | ca | 408 | 5.4 | 37 | 1.0e+00 | 16 | -1.20 | 13 | 0 | 0 | 1 | 2 | 3 | 2 | 5 | 1 | 4 | 4 | 4 | 2 | 2 | 4 | 2 | 10 | 27 | 56 | 85 | 79 | 66 | 22 | 7 | 3 | 1 | 3 | 1 | 0 | 3 | 1 | 2 | 0 | 2 | 1 | 0 | 2 | 1 | 0 |
| tc | tc | 198 | 5.0 | 37 | 1.0e+00 | 16 | -1.20 | 14 | 0 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 1 | 2 | 1 | 3 | 1 | 1 | 3 | 9 | 36 | 34 | 43 | 26 | 13 | 3 | 1 | 1 | 3 | 2 | 0 | 3 | 2 | 2 | 2 | 1 | 0 | 0 | 0 | 0 | 0 |
| gt | gt | 279 | 4.9 | 37 | 1.0e+00 | 16 | -1.20 | 15 | 0 | 1 | 0 | 1 | 2 | 0 | 0 | 2 | 0 | 6 | 2 | 2 | 2 | 2 | 2 | 3 | 14 | 38 | 52 | 55 | 44 | 10 | 8 | 3 | 2 | 1 | 6 | 5 | 4 | 4 | 2 | 1 | 1 | 2 | 2 | 0 | 0 | 0 |
| cg | cg | 83 | 1.8 | 37 | 1.0e+00 | 16 | -1.20 | 16 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 2 | 5 | 10 | 15 | 16 | 15 | 3 | 5 | 0 | 0 | 1 | 1 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
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