; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	4	4	15	15	0	0	0	15	2	2
c	2	5	0	0	0	14	0	0	4	2
g	2	4	0	0	15	0	1	0	6	8
t	7	2	0	0	0	1	14	0	3	3
//
; Sites	15
>site_0
TCAAGCGATC
>site_1
TTAAGCTATT
>site_2
ACAAGCTAGG
>site_3
AAAAGCTAAG
>site_4
ACAAGCTAAG
>site_5
TGAAGCTAGA
>site_6
AAAAGCTACT
>site_7
CTAAGCTACT
>site_8
TGAAGCTAGG
>site_9
GGAAGCTAGG
>site_10
TGAAGCTAGG
>site_11
GAAAGCTACC
>site_12
TAAAGTTACG
>site_13
TCAAGCTATA
>site_14
CCAAGCTAGG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m1_rc.png
;
a	1	1	0	0	0	0	0	0	0	4	2
c	12	2	15	13	1	16	12	1	18	7	3
g	4	14	2	5	17	1	5	16	0	6	12
t	1	1	1	0	0	1	1	1	0	1	1
//
; Sites	18
>site_0
CGCCCCCGCTA
>site_1
CCCCGCTGCAC
>site_2
CGCCGCCCCAG
>site_3
CACCGCCGCCC
>site_4
CGCCGCCGCAA
>site_5
TGCGGCGGCGG
>site_6
CGCCGCCGCCG
>site_7
GGCGGCGGCGG
>site_8
CGCCGCCGCCG
>site_9
GGCGGCGGCGG
>site_10
CGCCGCCGCCG
>site_11
GGCGGCGGCGG
>site_12
CGCCGCCGCCG
>site_13
GGCGGCGGCGC
>site_14
CGGCGGCGCAG
>site_15
CTGCGCCGCCG
>site_16
CGTCGCCTCGG
>site_17
ACCCGTCGCCT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m2_rc.png
;
a	1	2	0	0	0	0	7	7	3	4
c	2	1	0	0	0	0	0	0	2	1
g	1	3	7	0	6	0	0	0	0	1
t	3	1	0	7	1	7	0	0	2	1
//
; Sites	7
>site_0
CGGTTTAATC
>site_1
TGGTGTAATT
>site_2
AGGTGTAAAG
>site_3
TCGTGTAAAA
>site_4
TAGTGTAACA
>site_5
CAGTGTAACA
>site_6
GTGTGTAAAA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/oligos_6nt_mkv1//peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices_logo_m3_rc.png
;
; Host name	rsat
; Job started	2026-03-18.171206
; Job done	2026-03-18.171207
; Seconds	0.15
;	user	0.15
;	system	0.03
;	cuser	0.77
;	csystem	0.12
