; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	6	7	14	14	1	14	0	14	1	7	10
c	0	1	1	0	0	0	0	1	0	4	3
g	5	4	0	1	12	0	0	0	14	1	1
t	4	3	0	0	2	1	15	0	0	3	1
//
; Sites	15
>site_0
GAAAGATAAAT
>site_1
GAAAGATAGAG
>site_2
AAAATATAGTC
>site_3
AAAAGATCGCC
>site_4
AGAAGATAGAA
>site_5
GGAAGATAGAA
>site_6
ACAAGATAGAA
>site_7
AGAAGATAGAA
>site_8
ATAAAATAGCA
>site_9
TAAATATAGTA
>site_10
TGAAGATAGGA
>site_11
GTAGGATAGCA
>site_12
TTAAGATAGCC
>site_13
TAAAGTTAGAA
>site_14
GACAGATAGTA
a	2	3	0	0	1	0	2	1	0	2	3	0
c	13	1	12	15	1	14	13	1	14	12	2	11
g	0	10	3	0	11	0	0	12	0	0	8	2
t	0	1	0	0	2	1	0	1	1	1	2	2
//
; Sites	15
>site_0
CGCCCCCGCTAC
>site_1
AACCTCCGTCAT
>site_2
CGCCTCCTCCGT
>site_3
CGCCGCCCCAGG
>site_4
CACCGCCGCCCC
>site_5
CAGCACCGCCGC
>site_6
CGCCGCAACCTC
>site_7
CGCCGCCGCAAC
>site_8
CGCCGCCGCCGC
>site_9
CGCCGCCGCCGC
>site_10
CGCCGCCGCCGC
>site_11
CGCCGCCGCCGC
>site_12
CTGCGCCGCCGC
>site_13
CGGCGCAGCCCG
>site_14
ACCCGTCGCCTC
a	4	6	0	12	1	10	0	2	0	4	1
c	7	2	12	0	11	0	0	0	12	1	7
g	1	2	0	0	0	0	12	10	0	2	2
t	0	2	0	0	0	2	0	0	0	5	2
//
; Sites	12
>site_0
CCCACAGGCAA
>site_1
GACACAGGCTC
>site_2
CGCACTGGCTC
>site_3
CACACTGGCAT
>site_4
CCCACAGGCTC
>site_5
AGCAAAGGCGC
>site_6
ATCACAGGCTG
>site_7
AACACAGGCTT
>site_8
CACACAGACAG
>site_9
CACACAGACGC
>site_10
ATCACAGGCCC
>site_11
CACACAGGCAC
a	11	6	0	1	0	16	0	0	15	7	5
c	2	1	0	14	16	0	0	0	1	2	3
g	4	4	0	1	0	0	18	18	2	3	3
t	1	7	18	2	2	2	0	0	0	6	7
//
; Sites	18
>site_0
GGTACAGGACA
>site_1
GTTGCAGGATA
>site_2
AGTCCAGGAGT
>site_3
AATCTAGGAAG
>site_4
ATTCCAGGAAC
>site_5
GTTCCTGGAAT
>site_6
AGTCCAGGAGC
>site_7
ATTCCAGGAAG
>site_8
GGTCTAGGATC
>site_9
TCTCCAGGACT
>site_10
AATCCTGGAAT
>site_11
ATTCCAGGATT
>site_12
ATTCCAGGGTG
>site_13
ATTCCAGGAAA
>site_14
CATTCAGGATA
>site_15
CATTCAGGATA
>site_16
AATCCAGGCAT
>site_17
AATCCAGGGGT
; Host name	rsat
; Job started	2026-03-18.171209
; Job done	2026-03-18.171209
; Seconds	0.12
;	user	0.12
;	system	0
;	cuser	0
;	csystem	0
