RSAT - peak-motifs result

Analysis: H1LNC (18/03/2026 17:12)

peak-motifs  -v 1 -title H1LNC -i $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ

motif discovery
oligos_6nt_mkv1	oligos_6nt_mkv1_m1 assembly: aagcta (sig=1.08; e-value=0.083) RC: tagctt oligos_6nt_mkv1_m2 assembly: ccgccgc (sig=0.67; e-value=0.21) RC: gcggcgg oligos_6nt_mkv1_m3 assembly: gtgtaa (sig=0.27; e-value=0.54) RC: ttacac oligos_6nt_mkv1_m4 : (sig=; e-value=1) RC: oligos_6nt_mkv1_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	Not a single significant pattern	[positions_6nt]
oligos_7nt_mkv1	oligos_7nt_mkv1_m1 assembly: aagatag (sig=0.74; e-value=0.18) RC: ctatctt oligos_7nt_mkv1_m2 assembly: ccgccgcc (sig=0.74; e-value=0.18) RC: ggcggcgg oligos_7nt_mkv1_m3 assembly: cacaggc (sig=0.47; e-value=0.34) RC: gcctgtg oligos_7nt_mkv1_m4 assembly: tccagga (sig=0.17; e-value=0.68) RC: tcctgga oligos_7nt_mkv1_m5 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv1_m1	k-mer sig=1.08; evalue=0.083 tcAAGCTAsg CSTAGCTTGA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2 (3.45%) Max nb of predicted sites per peak: 6  (C11) Mean nb of predicted sites per peak: 3.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv1_m2	k-mer sig=0.67; evalue=0.21 CgCCGCCGCsg CSGCGGCGGCG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2 (3.45%) Max nb of predicted sites per peak: 19  (C19) Mean nb of predicted sites per peak: 10.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv1_m3	k-mer sig=0.27; evalue=0.54 ygGTGTAAha TDTTACACCR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3 (5.17%) Max nb of predicted sites per peak: 4  (C11) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_7nt_mkv1_m1	k-mer sig=0.74; evalue=0.18 daAAGATAGmm KKCTATCTTTH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3 (5.17%) Max nb of predicted sites per peak: 7  (C11) Mean nb of predicted sites per peak: 3.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_7nt_mkv1_m2	k-mer sig=0.74; evalue=0.18 CgCCgCCGCCgC GCGGCGGCGGCG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 2 (3.45%) Max nb of predicted sites per peak: 14  (C19) Mean nb of predicted sites per peak: 8.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_7nt_mkv1_m3	k-mer sig=0.47; evalue=0.34 MaCACAGGCwC GWGCCTGTGTK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 6 (10.34%) Max nb of predicted sites per peak: 4  (C11) Mean nb of predicted sites per peak: 1.83	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_7nt_mkv1_m4	k-mer sig=0.17; evalue=0.68 awTCCAGGAwt AWTCCTGGAWT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 3 (5.17%) Max nb of predicted sites per peak: 7  (C11) Mean nb of predicted sites per peak: 3.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title H1LNC -i $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 5 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ

Warning: Not a single pattern was found in file tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/03/18/peak-motifs.2026-03-18.171158_2026-03-18.171158_kZmdaJ/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab