; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.173738_2026-03-18.173738_ZkH2jH/results/dyads/peak-motifs_dyads-1str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.173738_2026-03-18.173738_ZkH2jH/results/dyads/peak-motifs_dyads-1str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.173738_2026-03-18.173738_ZkH2jH/results/dyads/peak-motifs_dyads-1str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.173738_2026-03-18.173738_ZkH2jH/results/dyads/peak-motifs_dyads-1str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.173738_2026-03-18.173738_ZkH2jH/results/dyads/peak-motifs_dyads-1str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	3	4	16	15	0	1	0	16	0	4	13
c	2	5	0	0	0	14	0	0	2	1	2
g	3	5	0	0	15	0	2	0	12	6	1
t	8	2	0	1	1	1	14	0	2	5	0
//
; Sites	16
>site_0
TTAAGCTATTA
>site_1
ACAAGCTAGGA
>site_2
ACAAGATAGAA
>site_3
TGAAGCTAGAA
>site_4
AAAAGCTACTA
>site_5
CTAAGCTACTA
>site_6
TAATGCTAGTC
>site_7
TGAATCTAGGA
>site_8
TGAAGCTAGGA
>site_9
GCAAGCGAGCA
>site_10
GGAAGCTAGGA
>site_11
TGAAGCTAGGA
>site_12
GAAAGCGAGTG
>site_13
TCAAGCTATAA
>site_14
TAAAGTTAGAA
>site_15
CCAAGCTAGGC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.173738_2026-03-18.173738_ZkH2jH/results/dyads//peak-motifs_dyads-1str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.173738_2026-03-18.173738_ZkH2jH/results/dyads//peak-motifs_dyads-1str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m1_rc.png
;
a	1	2	0	12	11	5	4	4	3	6	1	2	3	7	2	4	4	4	4	4	4	4	3	11	1	11	2	5
c	3	2	0	0	1	1	1	4	1	1	3	1	2	1	1	1	0	2	2	2	3	2	1	0	0	1	1	1
g	4	5	1	0	0	4	3	2	6	3	3	5	1	1	3	4	4	3	3	3	2	2	1	1	0	0	4	4
t	4	3	11	0	0	2	4	2	2	2	5	4	6	3	6	3	4	3	3	3	3	4	7	0	11	0	5	2
//
; Sites	12
>site_0
TTTAAGTAGTTGTATTAATCTCTATCTT
>site_1
ATTAATACAACTACTTAAAAAATATAGT
>site_2
GCTAAGACAAGTATTGGAGAAGTATAGA
>site_3
TATAAAGCCAAAAATTGGATAAAATAGC
>site_4
TCTAAATTGGTTCTGGTCTACGTAAACA
>site_5
GGTAAAAATCCGTGAGGTCGGCAATATG
>site_6
GGTAACCTTTTATTTATTTTCTAATATA
>site_7
CGTACTGAGGTGTAAAGGGATTTATATG
>site_8
TGTAAAGGGATTTATATGGGGACGTAGG
>site_9
CGGAAATCGGCCTACGTCCCCATATAAA
>site_10
GATAAGTAAAGGCAGAAAAGATTATATG
>site_11
CTTAAGAGGAGGGAGCATATTTGATAAA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.173738_2026-03-18.173738_ZkH2jH/results/dyads//peak-motifs_dyads-1str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.173738_2026-03-18.173738_ZkH2jH/results/dyads//peak-motifs_dyads-1str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m2_rc.png
;
a	8	4	1	0	15	10	12	7	4	8	7	8	6	4	3	4	7	3	4	7	5	15	15	2	3	4
c	2	1	0	0	0	1	0	2	4	1	0	3	2	1	4	4	0	4	6	1	1	0	0	1	2	2
g	3	2	0	0	0	2	1	3	3	4	5	2	3	5	3	3	2	4	2	4	6	0	0	11	7	2
t	2	8	14	15	0	2	2	3	4	2	3	2	4	5	5	4	6	4	3	3	3	0	0	1	3	7
//
; Sites	15
>site_0
GTTTATAGCTGCTGCCACTGAAAGCA
>site_1
GATTAATACAACTACTTAAAAAATAT
>site_2
ACTTAGAAGAGTAGCATGAGGAAGGA
>site_3
ATTTAAAAGAAAATTGAGAGAAAGGA
>site_4
TTTTAAAAAGAGATTAAACCGAAGGT
>site_5
GATTAAACCGAAGGTGATTAAAAGAC
>site_6
ATTTAATTTCTGGTGGTGCAGAAGTT
>site_7
AGTTAGAAGGTAAAGCTTGAGAAGAT
>site_8
ATTTAAAAAAAACTAAGGCAGAAGGC
>site_9
AAATAAATAAAAGGTTACCATAAGTA
>site_10
CATTATATTAGAAAATAAATAAAAGG
>site_11
CTTTAAAATGGTAGATTCCGTAACTT
>site_12
AGTTACGGAATCTACCATTTTAAAGT
>site_13
TTTTAAAGTTAATTGCTTGTCAAGCT
>site_14
ATTTAAACCAGACCTAGCCAGAAGGG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.173738_2026-03-18.173738_ZkH2jH/results/dyads//peak-motifs_dyads-1str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.173738_2026-03-18.173738_ZkH2jH/results/dyads//peak-motifs_dyads-1str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m3_rc.png
;
a	2	2	0	0	1	1	0	0	1	1
c	1	1	13	0	0	11	0	1	7	1
g	8	10	1	13	13	2	13	13	1	9
t	3	1	0	1	0	0	1	0	5	3
//
; Sites	14
>site_0
AGCGGGGGCG
>site_1
CACGGCTGTC
>site_2
ATCTGCGGTT
>site_3
GACGGAGGTT
>site_4
TCCGGGGGTA
>site_5
TGGGGCGGCG
>site_6
GGCGGCGGTG
>site_7
TGCGGCGGCG
>site_8
GGCGGCGGCG
>site_9
GGCGGCGGCG
>site_10
GGCGGCGGCG
>site_11
GGCGGCGGCG
>site_12
GGCGGCGCAG
>site_13
GGCGACGGGT
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.173738_2026-03-18.173738_ZkH2jH/results/dyads//peak-motifs_dyads-1str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.173738_2026-03-18.173738_ZkH2jH/results/dyads//peak-motifs_dyads-1str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices_logo_m4_rc.png
;
; Host name	rsat
; Job started	2026-03-18.173753
; Job done	2026-03-18.173754
; Seconds	0.15
;	user	0.15
;	system	0.05
;	cuser	1.03
;	csystem	0.16
