; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.173738_2026-03-18.173738_ZkH2jH/results/oligos_6-8nt/peak-motifs_oligos-1str-noov_6-8nt_mvk1_1_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.173738_2026-03-18.173738_ZkH2jH/results/oligos_6-8nt/peak-motifs_oligos-1str-noov_6-8nt_mvk1_1_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.173738_2026-03-18.173738_ZkH2jH/results/oligos_6-8nt/peak-motifs_oligos-1str-noov_6-8nt_mvk1_1_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/03/18/peak-motifs.2026-03-18.173738_2026-03-18.173738_ZkH2jH/results/oligos_6-8nt/peak-motifs_oligos-1str-noov_6-8nt_mvk1_1_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	1	1	0	1	0	0	0	0	1	0	0	0	1	1
c	10	5	0	12	4	1	14	4	1	14	4	4	10	3
g	2	6	15	1	10	14	1	11	13	0	11	11	1	10
t	2	3	0	1	1	0	0	0	0	1	0	0	3	1
//
; Sites	15
>site_0
TAGCGGGGGCGCTG
>site_1
CTGGGGCGGCGGTG
>site_2
GGGCGGCGGTGCTG
>site_3
AGGTTGCGGCGGCG
>site_4
TTGCGGCGGCGGCG
>site_5
CCGCCGCCGCCGCA
>site_6
CGGCGGCGGCGGCG
>site_7
CCGCCGCCGCCGCC
>site_8
CGGCGGCGGCGGCG
>site_9
CCGCCGCCGCCGCC
>site_10
CGGCGGCGGCGGCG
>site_11
GCGCCGCCGCCGCC
>site_12
CGGCGGCGGCGCAG
>site_13
CTGCGCCGCCGCCG
>site_14
CCGAGGCGACGGGT
a	4	2	0	9	9	0	1	0	9	1	1	8	6	4
c	0	1	3	0	0	0	8	0	0	0	0	1	2	0
g	4	1	6	0	0	8	0	0	0	8	8	0	1	4
t	1	5	0	0	0	1	0	9	0	0	0	0	0	1
//
; Sites	9
>site_0
GACAAGCTAGGAAA
>site_1
AACAAGCTAAGACA
>site_2
TTGAAGCTAGAAGG
>site_3
GTGAATCTAGGAAG
>site_4
ATGAAGCTAGGACT
>site_5
GTGAAGATAGGAAA
>site_6
AGGAAGCTAGGAAG
>site_7
GTGAAGCTAGGAAA
>site_8
ACCAAGCTAGGCAG
a	2	4	2	10	11	0	8	0	11	0	10	10	7	5	4
c	1	0	1	1	0	0	1	1	0	0	0	0	0	1	0
g	2	3	7	0	0	11	0	0	0	11	1	1	4	2	1
t	6	4	1	0	0	0	2	10	0	0	0	0	0	3	6
//
; Sites	11
>site_0
TGAAAGATAGAGATT
>site_1
GAGAAGATAGAAGTT
>site_2
TGGAAGACAGAAGTA
>site_3
TGGAAGATAGAAACA
>site_4
AACAAGATAGAAAAT
>site_5
TTTCAGATAGAAAAT
>site_6
TAGAAGATAGAAAAA
>site_7
CAGAAGTTAGAAGGT
>site_8
TTGAAGCTAGAAGGG
>site_9
GTGAAGATAGGAAAA
>site_10
ATAAAGTTAGAAAAT
a	3	2	14	2	0	0	0	13	0	0	6	5
c	3	5	0	0	1	11	14	1	0	0	2	3
g	4	6	0	2	1	1	0	0	14	14	5	3
t	4	1	0	10	12	2	0	0	0	0	1	3
//
; Sites	14
>site_0
TGAGTCCAGGAG
>site_1
GGATTCCAGGAA
>site_2
AGAGTCCAGGAG
>site_3
GGATTCCAGGAA
>site_4
CGATTTCCGGGT
>site_5
TTATTCCAGGAT
>site_6
TCATGCCAGGGC
>site_7
GCATTCCAGGGT
>site_8
ACATTCCAGGAA
>site_9
CAATCCCAGGCC
>site_10
GGAATCCAGGCA
>site_11
CCAATCCAGGGG
>site_12
TCATTTCAGGTC
>site_13
AAATTGCAGGGA
a	3	5	1	1	0	2	1	0	0	2	0
c	3	2	0	13	16	0	0	1	1	2	3
g	9	4	15	0	0	0	14	0	15	4	9
t	1	5	0	2	0	14	1	15	0	8	4
//
; Sites	16
>site_0
TTGCCTGTGGG
>site_1
AGACCTGTGGG
>site_2
GGGACTGTGGC
>site_3
GAGCCTGTGTC
>site_4
GAGCCAGTGCG
>site_5
ATGCCAGTGTG
>site_6
CGGCCTACGTC
>site_7
GAGCCTGTGGG
>site_8
GCGCCTTTGCT
>site_9
CAGCCTGTGAT
>site_10
AAGCCTGTGTT
>site_11
CTGTCTGTGTG
>site_12
GTGCCTGTCTG
>site_13
GCGTCTGTGTG
>site_14
GGGCCTGTGAT
>site_15
GTGCCTGTGTG
; Host name	rsat
; Job started	2026-03-18.173747
; Job done	2026-03-18.173747
; Seconds	0.13
;	user	0.13
;	system	0.01
;	cuser	0
;	csystem	0
