RSAT - peak-motifs result

Analysis: iggonly_ecoli_wenbo_brac_1 (19/03/2026 13:57)

peak-motifs  -v 1 -title iggonly_ecoli_wenbo_brac_1 -i $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.135232_2026-03-19.135232_IKKv9k/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 10 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.135232_2026-03-19.135232_IKKv9k

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: tagtctacg (sig=3.50; e-value=0.00032) RC: cgtagacta oligos_6nt_mkv3_m2 assembly: tgtcaa (sig=2.40; e-value=0.004) RC: ttgaca oligos_6nt_mkv3_m3 assembly: gcatgc (sig=2.18; e-value=0.0066) RC: gcatgc oligos_6nt_mkv3_m4 assembly: accggt (sig=1.78; e-value=0.017) RC: accggt oligos_6nt_mkv3_m5 assembly: agatct (sig=1.59; e-value=0.026) RC: agatct oligos_6nt_mkv3_m6 assembly: gctagc (sig=1.39; e-value=0.041) RC: gctagc oligos_6nt_mkv3_m7 assembly: acatgt (sig=0.79; e-value=0.16) RC: acatgt oligos_6nt_mkv3_m8 assembly: ataatc (sig=0.71; e-value=0.19) RC: gattat oligos_6nt_mkv3_m9 assembly: cattca (sig=0.63; e-value=0.23) RC: tgaatg oligos_6nt_mkv3_m10 assembly: gggaaa (sig=0.59; e-value=0.26) RC: tttccc	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	positions_6nt_m1 assembly: cgccag (sig=0.79; e-value=0.16) RC: ctggcg positions_6nt_m2 assembly: cagaca (sig=0.11; e-value=0.78) RC: tgtctg positions_6nt_m3 assembly: cgccac (sig=0.04; e-value=0.91) RC: gtggcg positions_6nt_m4 assembly: cggcag (sig=0.02; e-value=0.95) RC: ctgccg positions_6nt_m5 : (sig=; e-value=1) RC: positions_6nt_m6 : (sig=; e-value=1) RC: positions_6nt_m7 : (sig=; e-value=1) RC: positions_6nt_m8 : (sig=; e-value=1) RC: positions_6nt_m9 : (sig=; e-value=1) RC: positions_6nt_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: tacagta (sig=4.98; e-value=1e-05) RC: tactgta oligos_7nt_mkv4_m2 assembly: gtagacta (sig=2.35; e-value=0.0045) RC: tagtctac oligos_7nt_mkv4_m3 assembly: tactcgta (sig=1.42; e-value=0.038) RC: tacgagta oligos_7nt_mkv4_m4 assembly: agtgtag (sig=1.12; e-value=0.076) RC: ctacact oligos_7nt_mkv4_m5 assembly: agtgcag (sig=0.39; e-value=0.41) RC: ctgcact oligos_7nt_mkv4_m6 assembly: tagatcta (sig=0.31; e-value=0.49) RC: tagatcta oligos_7nt_mkv4_m7 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m8 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m9 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	Not a single significant pattern	[positions_7nt]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=3.50; evalue=0.00032 ksTAGTCTACgvc GBCGTAGACTASM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ksTAGTCTACgvc ZSCAN29 MA1602.2 D 10 0.7143 0.766 0.547 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 49 (7.24%) Max nb of predicted sites per peak: 4  (brac1_R2.macs2_peak_451::scahrs1_3:54621687-54621837(.)) Mean nb of predicted sites per peak: 1.37	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=2.40; evalue=0.004 ccTGTCAAmr YKTTGACAGG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ccTGTCAAmr MEIS2 MA0774.1 R 8 0.8000 0.925 0.740 NA NA MEIS3 MA0775.2 R 7 0.7000 0.941 0.658 NA NA PKNOX1 MA0782.3 R 9 0.8182 0.706 0.577 NA NA Total matches= 15 (12 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 91 (13.44%) Max nb of predicted sites per peak: 2  (brac1_R2.macs2_peak_603::scahrs1_54:13545527-13545677(.)) Mean nb of predicted sites per peak: 1.11	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=2.18; evalue=0.0066 vtGCATGCab VTGCATGCAB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor vtGCATGCab POU5F1 MA1115.2 R 6 0.5455 0.876 0.478 NA NA HIC2 MA0738.2 D 6 0.6000 0.721 0.433 NA NA POU2F3 MA0627.3 R 7 0.5833 0.713 0.416 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 59 (8.71%) Max nb of predicted sites per peak: 6  (brac1_R2.macs2_peak_189::scahrs1_100:168231565-168231715(.)) Mean nb of predicted sites per peak: 2.36	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=1.78; evalue=0.017 rwACCGGTwy RWACCGGTWY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rwACCGGTwy GRHL1 MA0647.2 D 10 1.0000 0.807 0.807 NA NA TFCP2 MA1968.2 D 9 0.9000 0.829 0.746 NA NA OVOL1 MA1544.2 D 10 1.0000 0.708 0.708 NA NA Total matches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 33 (4.87%) Max nb of predicted sites per peak: 2  (brac1_R2.macs2_peak_70::scahrs1_100:54731264-54731414(.)) Mean nb of predicted sites per peak: 2.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv3_m5	k-mer sig=1.59; evalue=0.026 gtAGATCTac GTAGATCTAC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor gtAGATCTac Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (2.95%) Max nb of predicted sites per peak: 4  (brac1_R2.macs2_peak_497::scahrs1_348:27565104-27565254(.)) Mean nb of predicted sites per peak: 2.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_6nt_mkv3_m6	k-mer sig=1.39; evalue=0.041 svGCTAGCbs SVGCTAGCBS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor svGCTAGCbs ZKSCAN3 MA1973.2 D 10 0.7143 0.775 0.554 NA NA Total matches= 1		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 45 (6.65%) Max nb of predicted sites per peak: 4  (brac1_R2.macs2_peak_64::scahrs1_100:52011301-52011451(.)) Mean nb of predicted sites per peak: 2.22	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_6nt_mkv3_m7	k-mer sig=0.79; evalue=0.16 stACATGTac GTACATGTAS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor stACATGTac MXI1 MA1108.3 D 6 0.6000 0.864 0.518 NA NA ZNF816 MA1719.2 D 10 0.6667 0.716 0.477 NA NA TP63 MA0525.2 R 9 0.4737 0.908 0.430 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 59 (8.71%) Max nb of predicted sites per peak: 6  (brac1_R2.macs2_peak_459::scahrs1_330:259633-259783(.)) Mean nb of predicted sites per peak: 2.37	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_6nt_mkv3_m8	k-mer sig=0.71; evalue=0.19 brATAATCmk MKGATTATYV	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor brATAATCmk DPRX MA1480.2 D 9 0.9000 0.851 0.766 NA NA OTX2 MA0712.3 R 7 0.7000 0.922 0.646 NA NA PITX2 MA1547.2 D 8 0.8000 0.782 0.625 NA NA Total matches= 93 (90 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 49 (7.24%) Max nb of predicted sites per peak: 3  (brac1_R2.macs2_peak_335::scahrs1_148:43745389-43745539(.)) Mean nb of predicted sites per peak: 1.10	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_6nt_mkv3_m9	k-mer sig=0.63; evalue=0.23 kbCATTCAyk MRTGAATGVM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor kbCATTCAyk ZNF24 MA1124.1 D 10 0.7692 0.827 0.636 NA NA NKX6-3 MA1530.2 D 8 0.8000 0.711 0.569 NA NA TEAD3 MA0808.1 D 8 0.8000 0.704 0.563 NA NA Total matches= 8 (5 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 79 (11.67%) Max nb of predicted sites per peak: 2  (brac1_R2.macs2_peak_99::scahrs1_100:72372816-72372966(.)) Mean nb of predicted sites per peak: 1.10	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_6nt_mkv3_m10	k-mer sig=0.59; evalue=0.26 vgGGGAAAwy RWTTTCCCCB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor vgGGGAAAwy NFATC4 MA1525.3 D 9 0.9000 0.776 0.698 NA NA ZNF75D MA1601.2 D 10 0.8333 0.787 0.656 NA NA ZNF75A MA2097.1 R 10 0.8333 0.780 0.650 NA NA Total matches= 27 (24 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 37 (5.47%) Max nb of predicted sites per peak: 2  (brac1_R2.macs2_peak_644::scahrs1_63:23643284-23643434(.)) Mean nb of predicted sites per peak: 1.16	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   positions_6nt_m1	k-mer sig=0.79; evalue=0.16 csCGCCAGsh DSCTGGCGSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor csCGCCAGsh ZNF417 MA1727.2 D 7 0.7000 0.837 0.586 NA NA Zfp961 MA2126.1 D 7 0.6364 0.847 0.539 NA NA YY2 MA0748.3 R 7 0.7000 0.752 0.527 NA NA Total matches= 9 (6 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 45 (6.65%) Max nb of predicted sites per peak: 2  (brac1_R2.macs2_peak_1::scahrs1_100:1300018-1300168(.)) Mean nb of predicted sites per peak: 1.02	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   positions_6nt_m2	k-mer sig=0.11; evalue=0.78 yaCAGACAgd HCTGTCTGTR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yaCAGACAgd Smad4 MA1153.2 R 7 0.7000 0.786 0.550 NA NA ZNF768 MA1731.2 R 8 0.7273 0.754 0.548 NA NA SMAD2 MA1964.2 D 6 0.6000 0.894 0.537 NA NA Total matches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 50 (7.39%) Max nb of predicted sites per peak: 3  (brac1_R2.macs2_peak_182::scahrs1_100:160695605-160695755(.)) Mean nb of predicted sites per peak: 1.14	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   positions_6nt_m3	k-mer sig=0.04; evalue=0.91 mmCGCCACbs SVGTGGCGKK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mmCGCCACbs SP9 MA1564.2 D 9 0.8182 0.711 0.581 NA NA ZNF417 MA1727.2 D 7 0.7000 0.809 0.567 NA NA KLF12 MA0742.2 R 8 0.7273 0.752 0.547 NA NA Total matches= 17 (14 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 41 (6.06%) Max nb of predicted sites per peak: 2  (brac1_R2.macs2_peak_480::scahrs1_348:14832841-14832991(.)) Mean nb of predicted sites per peak: 1.05	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   positions_6nt_m4	k-mer sig=0.02; evalue=0.95 sbCGGCAGcr YGCTGCCGVS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor sbCGGCAGcr ZBTB7A MA0750.3 D 9 0.9000 0.718 0.646 NA NA ELK4 MA0076.3 R 9 0.9000 0.713 0.642 NA NA ZFP57 MA1583.2 R 7 0.7000 0.862 0.603 NA NA Total matches= 10 (7 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 35 (5.17%) Max nb of predicted sites per peak: 1  (brac1_R2.macs2_peak_77::scahrs1_100:57048422-57048572(.)) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   oligos_7nt_mkv4_m1	k-mer sig=4.98; evalue=1e-05 asTACAGTAcw WGTACTGTAST	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor asTACAGTAcw ZBTB32 MA1580.1 D 10 0.9091 0.905 0.823 NA NA OSR1 MA1542.2 R 8 0.7273 0.813 0.592 NA NA ZKSCAN1 MA1585.2 D 8 0.6667 0.727 0.485 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 58 (8.57%) Max nb of predicted sites per peak: 4  (brac1_R2.macs2_peak_429::scahrs1_3:28925767-28925917(.)) Mean nb of predicted sites per peak: 1.21	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 16   oligos_7nt_mkv4_m2	k-mer sig=2.35; evalue=0.0045 kysTAGACTAsa TSTAGTCTASRM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor kysTAGACTAsa SMAD3 MA0795.1 R 9 0.6923 0.708 0.490 NA NA ZSCAN29 MA1602.2 R 9 0.6429 0.747 0.480 NA NA Smad4 MA1153.2 R 7 0.5833 0.731 0.427 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 43 (6.35%) Max nb of predicted sites per peak: 4  (brac1_R2.macs2_peak_451::scahrs1_3:54621687-54621837(.)) Mean nb of predicted sites per peak: 1.65	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 17   oligos_7nt_mkv4_m3	k-mer sig=1.42; evalue=0.038 hstACTcGTAcw WGTACGAGTASD	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor hstACTcGTAcw HOXC13 MA0907.2 D 8 0.6154 0.802 0.494 NA NA Vdr MA0693.4 R 7 0.5833 0.712 0.416 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 53 (7.83%) Max nb of predicted sites per peak: 6  (brac1_R2.macs2_peak_511::scahrs1_348:39069675-39069825(.)) Mean nb of predicted sites per peak: 1.60	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 18   oligos_7nt_mkv4_m4	k-mer sig=1.12; evalue=0.076 stAGTGTAGwc GWCTACACTAS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor stAGTGTAGwc ZSCAN29 MA1602.2 R 10 0.8333 0.733 0.611 NA NA NKX2-8 MA0673.2 R 7 0.5833 0.774 0.452 NA NA NKX2-4 MA2003.2 R 7 0.5833 0.759 0.443 NA NA Total matches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 38 (5.61%) Max nb of predicted sites per peak: 2  (brac1_R2.macs2_peak_94::scahrs1_100:69450506-69450656(.)) Mean nb of predicted sites per peak: 1.13	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 19   oligos_7nt_mkv4_m5	k-mer sig=0.39; evalue=0.41 syAGTGCAGkv BMCTGCACTRS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor syAGTGCAGkv NR1I3 MA1534.2 R 8 0.7273 0.748 0.544 NA NA THAP1 MA0597.3 D 8 0.7273 0.735 0.534 NA NA Vdr MA0693.4 D 7 0.6364 0.773 0.492 NA NA Total matches= 12 (9 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 46 (6.79%) Max nb of predicted sites per peak: 2  (brac1_R2.macs2_peak_376::scahrs1_243:207063-207213(.)) Mean nb of predicted sites per peak: 1.07	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 20   oligos_7nt_mkv4_m6	k-mer sig=0.31; evalue=0.49 msTAGATCTAsk MSTAGATCTASK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor msTAGATCTAsk Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 26 (3.84%) Max nb of predicted sites per peak: 4  (brac1_R2.macs2_peak_497::scahrs1_348:27565104-27565254(.)) Mean nb of predicted sites per peak: 2.15	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title iggonly_ecoli_wenbo_brac_1 -i $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.135232_2026-03-19.135232_IKKv9k/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 10 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.135232_2026-03-19.135232_IKKv9k

Warning: Not a single pattern was found in file tmp/www-data/2026/03/19/peak-motifs.2026-03-19.135232_2026-03-19.135232_IKKv9k/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab