peak-motifs iggonly_ecoli_wenbo_brac

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=3.28; evalue=0.00052

wmcTGTCAArm

KYTTGACAGKW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wmcTGTCAArm

MEIS2 MA0774.1 R 8 0.7273 0.951 0.692 NA NA

MEIS3 MA0775.2 R 7 0.6364 0.949 0.604 NA NA

PBX3 MA1114.2 R 10 0.8333 0.710 0.592 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 82 (6.09%)
Max nb of predicted sites per peak: 2
(brac1_R3.macs2_peak_711::scahrs1_22:300152-300302(.))
Mean nb of predicted sites per peak: 1.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=2.81; evalue=0.0015

ksaTGCATGCAyk

MRTGCATGCATSM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ksaTGCATGCAyk

POU5F1 MA1115.2 D 7 0.5385 0.812 0.437 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 58 (4.31%)
Max nb of predicted sites per peak: 6
(brac1_R3.macs2_peak_952::scahrs1_348:24088033-24088183(.))
Mean nb of predicted sites per peak: 2.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=2.75; evalue=0.0018

rtACTGTAcw

WGTACAGTAY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rtACTGTAcw

ZBTB32 MA1580.1 R 10 1.0000 0.942 0.942 NA NA

OSR1 MA1542.2 D 7 0.6364 0.788 0.502 NA NA

DMRTA2 MA1478.2 R 6 0.6000 0.777 0.466 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 141 (10.47%)
Max nb of predicted sites per peak: 7
(brac1_R3.macs2_peak_256::scahrs1_100:124660008-124660158(.))
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=2.12; evalue=0.0076

ryAGTCTACgcy

RGCGTAGACTRY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ryAGTCTACgcy

ZSCAN29 MA1602.2 D 10 0.7692 0.776 0.597 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 65 (4.83%)
Max nb of predicted sites per peak: 3
(brac1_R3.macs2_peak_1083::scahrs1_40:20349255-20349405(.))
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=1.68; evalue=0.021

rrAAATCCsb

VSGGATTTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrAAATCCsb

RELA MA0107.1 R 10 1.0000 0.730 0.730 NA NA

REL MA0101.1 R 10 1.0000 0.719 0.719 NA NA

PITX2 MA1547.2 D 8 0.8000 0.732 0.586 NA NA

Total matches= 18 (15 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 65 (4.83%)
Max nb of predicted sites per peak: 2
(brac1_R3.macs2_peak_186::scahrs1_100:96191559-96191709(.))
Mean nb of predicted sites per peak: 1.03

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_mkv3_m6

k-mer sig=1.07; evalue=0.085

twCATGTACat

ATGTACATGWA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor twCATGTACat

MXI1 MA1108.3 D 6 0.5455 0.812 0.443 NA NA

TP73 MA0861.2 D 10 0.5882 0.723 0.425 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 124 (9.21%)
Max nb of predicted sites per peak: 4
(brac1_R3.macs2_peak_397::scahrs1_106:7847911-7848061(.))
Mean nb of predicted sites per peak: 1.45

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6nt_mkv3_m7

k-mer sig=0.67; evalue=0.21

vrAAGTAAar

YTTTACTTYB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vrAAGTAAar

Nr2e1 MA0676.1 D 9 0.9000 0.704 0.634 NA NA

ELK1::HOXA1 MA1931.1 D 10 0.7143 0.770 0.550 NA NA

FOXC2 MA0846.2 D 9 0.7500 0.714 0.535 NA NA

Total matches= 26 (23 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 56 (4.16%)
Max nb of predicted sites per peak: 2
(brac1_R3.macs2_peak_9::scahrs1_100:2424853-2425003(.))
Mean nb of predicted sites per peak: 1.09

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6nt_mkv3_m8

k-mer sig=0.52; evalue=0.3

rcAGCAGCar

YTGCTGCTGY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rcAGCAGCar

OSR2 MA1646.2 D 8 0.8000 0.769 0.615 NA NA

MYOG MA0500.3 D 8 0.8000 0.712 0.570 NA NA

ZNF93 MA1721.2 D 10 0.7143 0.797 0.570 NA NA

Total matches= 18 (15 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 145 (10.76%)
Max nb of predicted sites per peak: 13
(brac1_R3.macs2_peak_146::scahrs1_100:67714168-67714318(.))
Mean nb of predicted sites per peak: 1.40

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_6nt_mkv3_m9

k-mer sig=0.32; evalue=0.48

yyCATTCAys

SRTGAATGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyCATTCAys

ZNF24 MA1124.1 D 10 0.7692 0.817 0.628 NA NA

NKX6-3 MA1530.2 D 8 0.8000 0.722 0.578 NA NA

TEAD3 MA0808.1 D 8 0.8000 0.714 0.571 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 123 (9.13%)
Max nb of predicted sites per peak: 3
(brac1_R3.macs2_peak_1123::scahrs1_40:51007886-51008036(.))
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_6nt_mkv3_m10

k-mer sig=0.24; evalue=0.58

yrCACGCAsv

BSTGCGTGYR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yrCACGCAsv

EPAS1 MA2325.1 D 9 0.9000 0.732 0.659 NA NA

ZBTB14 MA1650.2 D 8 0.8000 0.715 0.572 NA NA

Zfp335 MA2002.2 D 7 0.7000 0.748 0.524 NA NA

Total matches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 76 (5.64%)
Max nb of predicted sites per peak: 8
(brac1_R3.macs2_peak_869::scahrs1_316:207668-207818(.))
Mean nb of predicted sites per peak: 1.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 positions_6nt_m1

k-mer sig=0.74; evalue=0.18

wcACTCACwg

CWGTGAGTGW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wcACTCACwg

MSANTD3 MA1523.2 D 7 0.7000 0.937 0.656 NA NA

BATF3 MA0835.3 D 7 0.7000 0.841 0.588 NA NA

BATF::JUN MA0462.3 D 7 0.7000 0.834 0.584 NA NA

Total matches= 29 (26 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 49 (3.64%)
Max nb of predicted sites per peak: 1
(brac1_R3.macs2_peak_996::scahrs1_348:50052013-50052163(.))
Mean nb of predicted sites per peak: 1.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv4_m1

k-mer sig=4.92; evalue=1.2e-05

mwgTACAGTAcw

WGTACTGTACWK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mwgTACAGTAcw

ZBTB32 MA1580.1 D 10 0.8333 0.929 0.774 NA NA

OSR1 MA1542.2 R 8 0.6667 0.811 0.541 NA NA

ZKSCAN1 MA1585.2 D 8 0.6154 0.734 0.452 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 77 (5.72%)
Max nb of predicted sites per peak: 5
(brac1_R3.macs2_peak_256::scahrs1_100:124660008-124660158(.))
Mean nb of predicted sites per peak: 1.53

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv4_m2

k-mer sig=2.37; evalue=0.0043

yhgTAGACTAcg

CGTAGTCTACDR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yhgTAGACTAcg

ZSCAN29 MA1602.2 R 9 0.6429 0.777 0.500 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 61 (4.53%)
Max nb of predicted sites per peak: 4
(brac1_R3.macs2_peak_1083::scahrs1_40:20349255-20349405(.))
Mean nb of predicted sites per peak: 1.48

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv4_m3

k-mer sig=0.13; evalue=0.74

syAGTGCAGtm

KACTGCACTRS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syAGTGCAGtm

NR1I3 MA1534.2 R 8 0.7273 0.754 0.548 NA NA

THAP1 MA0597.3 D 8 0.7273 0.751 0.546 NA NA

Vdr MA0693.4 D 7 0.6364 0.773 0.492 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 87 (6.46%)
Max nb of predicted sites per peak: 2
(brac1_R3.macs2_peak_884::scahrs1_348:2051820-2051970(.))
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv4_m4

k-mer sig=0.10; evalue=0.79

cmAGTGTCAmt

AKTGACACTKG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cmAGTGTCAmt

MEIS3 MA0775.2 R 7 0.6364 0.857 0.545 NA NA

PKNOX1 MA0782.3 R 8 0.6154 0.765 0.471 NA NA

NKX2-8 MA0673.2 R 7 0.5833 0.799 0.466 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 91 (6.76%)
Max nb of predicted sites per peak: 3
(brac1_R3.macs2_peak_864::scahrs1_3:57366689-57366839(.))
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 oligos_7nt_mkv4_m5

k-mer sig=0.09; evalue=0.81

yrCATGCACsg

CSGTGCATGYR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yrCATGCACsg

Zfp335 MA2002.2 D 7 0.6364 0.731 0.465 NA NA

POU5F1 MA1115.2 D 7 0.6364 0.701 0.446 NA NA

MXI1 MA1108.3 D 6 0.5455 0.815 0.445 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 110 (8.17%)
Max nb of predicted sites per peak: 3
(brac1_R3.macs2_peak_397::scahrs1_106:7847911-7848061(.))
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m1

k-mer sig=1.21; evalue=0.062

rhTGACACAad

HTTGTGTCADY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rhTGACACAad

FOSL2 MA0478.2 D 10 0.9091 0.737 0.670 NA NA

FOSL1::JUN MA1128.2 D 9 0.8182 0.792 0.648 NA NA

MAFK MA0496.4 D 10 0.9091 0.708 0.644 NA NA

Total matches= 36 (33 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 56 (4.16%)
Max nb of predicted sites per peak: 4
(brac1_R3.macs2_peak_1270::scahrs1_63:28484528-28484678(.))
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: iggonly_ecoli_wenbo_brac_2 (19/03/2026 13:59)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ksaTGCATGCAyk

POU5F1 MA1115.2 D 7 0.5385 0.812 0.437 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ryAGTCTACgcy

ZSCAN29 MA1602.2 D 10 0.7692 0.776 0.597 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor twCATGTACat

MXI1 MA1108.3 D 6 0.5455 0.812 0.443 NA NA

TP73 MA0861.2 D 10 0.5882 0.723 0.425 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yhgTAGACTAcg

ZSCAN29 MA1602.2 R 9 0.6429 0.777 0.500 NA NA

Total matches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: iggonly_ecoli_wenbo_brac_2 (19/03/2026 13:59)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ksaTGCATGCAyk POU5F1 MA1115.2 D 7 0.5385 0.812 0.437 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ryAGTCTACgcy ZSCAN29 MA1602.2 D 10 0.7692 0.776 0.597 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor twCATGTACat MXI1 MA1108.3 D 6 0.5455 0.812 0.443 NA NA TP73 MA0861.2 D 10 0.5882 0.723 0.425 NA NA Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor yhgTAGACTAcg ZSCAN29 MA1602.2 R 9 0.6429 0.777 0.500 NA NA Total matches= 1

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ksaTGCATGCAyk

POU5F1 MA1115.2 D 7 0.5385 0.812 0.437 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ryAGTCTACgcy

ZSCAN29 MA1602.2 D 10 0.7692 0.776 0.597 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor twCATGTACat

MXI1 MA1108.3 D 6 0.5455 0.812 0.443 NA NA

TP73 MA0861.2 D 10 0.5882 0.723 0.425 NA NA

Total matches= 2

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yhgTAGACTAcg

ZSCAN29 MA1602.2 R 9 0.6429 0.777 0.500 NA NA

Total matches= 1