RSAT - peak-motifs result

Analysis: iggonly_ecoli_dinithi_brac (19/03/2026 14:07)

peak-motifs  -v 1 -title iggonly_ecoli_dinithi_brac -i $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.135542_2026-03-19.135542_foDjaa/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 10 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.135542_2026-03-19.135542_foDjaa

motif discovery
oligos_6nt_mkv4	oligos_6nt_mkv4_m1 assembly: tactgta (sig=18.92; e-value=1.2e-19) RC: tacagta oligos_6nt_mkv4_m2 assembly: ccatgg (sig=4.80; e-value=1.6e-05) RC: ccatgg oligos_6nt_mkv4_m3 assembly: taatta (sig=4.08; e-value=8.3e-05) RC: taatta oligos_6nt_mkv4_m4 assembly: acatgt (sig=2.63; e-value=0.0023) RC: acatgt oligos_6nt_mkv4_m5 assembly: cttatc (sig=2.22; e-value=0.006) RC: gataag oligos_6nt_mkv4_m6 assembly: ctttcc (sig=1.92; e-value=0.012) RC: ggaaag oligos_6nt_mkv4_m7 assembly: ctttgc (sig=1.80; e-value=0.016) RC: gcaaag oligos_6nt_mkv4_m8 assembly: ctcacc (sig=1.67; e-value=0.021) RC: ggtgag oligos_6nt_mkv4_m9 assembly: cattgc (sig=1.44; e-value=0.036) RC: gcaatg oligos_6nt_mkv4_m10 assembly: cattac (sig=1.41; e-value=0.039) RC: gtaatg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	positions_6nt_m1 assembly: aaaaaa (sig=0.08; e-value=0.83) RC: tttttt positions_6nt_m2 assembly: acggat (sig=0.06; e-value=0.87) RC: atccgt positions_6nt_m3 assembly: agccct (sig=-0.00; e-value=1) RC: agggct positions_6nt_m4 : (sig=; e-value=1) RC: positions_6nt_m5 : (sig=; e-value=1) RC: positions_6nt_m6 : (sig=; e-value=1) RC: positions_6nt_m7 : (sig=; e-value=1) RC: positions_6nt_m8 : (sig=; e-value=1) RC: positions_6nt_m9 : (sig=; e-value=1) RC: positions_6nt_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
oligos_7nt_mkv5	oligos_7nt_mkv5_m1 assembly: tacagta (sig=8.29; e-value=5.1e-09) RC: tactgta oligos_7nt_mkv5_m2 assembly: taccgta (sig=2.87; e-value=0.0013) RC: tacggta oligos_7nt_mkv5_m3 assembly: agtgtga (sig=2.76; e-value=0.0017) RC: tcacact oligos_7nt_mkv5_m4 assembly: cattatc (sig=2.76; e-value=0.0017) RC: gataatg oligos_7nt_mkv5_m5 assembly: gggttaa (sig=1.58; e-value=0.026) RC: ttaaccc oligos_7nt_mkv5_m6 assembly: aaaattaa (sig=1.45; e-value=0.035) RC: ttaatttt oligos_7nt_mkv5_m7 assembly: cacatgc (sig=1.22; e-value=0.06) RC: gcatgtg oligos_7nt_mkv5_m8 assembly: cacacgc (sig=0.97; e-value=0.11) RC: gcgtgtg oligos_7nt_mkv5_m9 assembly: catgcac (sig=0.90; e-value=0.13) RC: gtgcatg oligos_7nt_mkv5_m10 assembly: cgtcatc (sig=0.71; e-value=0.19) RC: gatgacg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	positions_7nt_m1 assembly: tgacgtca (sig=0.27; e-value=0.54) RC: tgacgtca positions_7nt_m2 : (sig=; e-value=1) RC: positions_7nt_m3 : (sig=; e-value=1) RC: positions_7nt_m4 : (sig=; e-value=1) RC: positions_7nt_m5 : (sig=; e-value=1) RC: positions_7nt_m6 : (sig=; e-value=1) RC: positions_7nt_m7 : (sig=; e-value=1) RC: positions_7nt_m8 : (sig=; e-value=1) RC: positions_7nt_m9 : (sig=; e-value=1) RC: positions_7nt_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6nt_mkv4_m1	k-mer sig=18.92; evalue=1.2e-19 wgTACTGTAcw WGTACAGTACW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wgTACTGTAcw ZBTB32 MA1580.1 R 10 0.9091 0.935 0.850 NA NA OSR1 MA1542.2 D 8 0.7273 0.783 0.570 NA NA ZKSCAN1 MA1585.2 R 8 0.6667 0.717 0.478 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 652 (5.71%) Max nb of predicted sites per peak: 12  (brac1_R1.macs2_peak_4948::scahrs1_148:27824553-27824703(.)) Mean nb of predicted sites per peak: 1.49	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv4_m2	k-mer sig=4.80; evalue=1.6e-05 trCCATGGya TRCCATGGYA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor trCCATGGya RFX2 MA0600.3 D 10 0.7143 0.873 0.624 NA NA RFX5 MA0510.3 D 10 0.7143 0.828 0.592 NA NA RFX1 MA0509.3 D 10 0.6250 0.847 0.529 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 593 (5.19%) Max nb of predicted sites per peak: 6  (brac1_R1.macs2_peak_4776::scahrs1_148:11986887-11987037(.)) Mean nb of predicted sites per peak: 2.09	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv4_m3	k-mer sig=4.08; evalue=8.3e-05 waTAATTAtw WATAATTATW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor waTAATTAtw Lhx1 MA1518.3 R 10 1.0000 0.823 0.823 NA NA LHX6 MA0658.2 D 8 0.8000 0.889 0.711 NA NA Alx1 MA0854.2 D 8 0.8000 0.880 0.704 NA NA Total matches= 99 (96 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 362 (3.17%) Max nb of predicted sites per peak: 4  (brac1_R1.macs2_peak_9098::scahrs1_40:27233216-27233366(.)) Mean nb of predicted sites per peak: 2.08	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv4_m4	k-mer sig=2.63; evalue=0.0023 gyACATGTrc GYACATGTRC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor gyACATGTrc MXI1 MA1108.3 R 6 0.6000 0.905 0.543 NA NA CLOCK MA0819.3 D 7 0.7000 0.711 0.498 NA NA TP63 MA0525.2 R 9 0.4737 0.896 0.424 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 568 (4.97%) Max nb of predicted sites per peak: 6  (brac1_R1.macs2_peak_637::scahrs1_100:44358047-44358197(.)) Mean nb of predicted sites per peak: 2.16	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv4_m5	k-mer sig=2.22; evalue=0.006 ywCTTATCsr YSGATAAGWR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ywCTTATCsr GATA6 MA1104.3 D 8 0.8000 0.914 0.731 NA NA TRPS1 MA1970.2 D 8 0.8000 0.913 0.731 NA NA Gata3 MA0037.5 D 8 0.8000 0.908 0.726 NA NA Total matches= 13 (10 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 433 (3.79%) Max nb of predicted sites per peak: 4  (brac1_R1.macs2_peak_3316::scahrs1_11:2261131-2261281(.)) Mean nb of predicted sites per peak: 1.08	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_6nt_mkv4_m6	k-mer sig=1.92; evalue=0.012 ymCTTTCCtg CAGGAAAGKR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ymCTTTCCtg NFATC4 MA1525.3 R 9 0.9000 0.787 0.708 NA NA ZNF75D MA1601.2 R 10 0.8333 0.707 0.589 NA NA TEAD3 MA0808.1 D 8 0.8000 0.718 0.574 NA NA Total matches= 25 (22 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 989 (8.66%) Max nb of predicted sites per peak: 3  (brac1_R1.macs2_peak_8460::scahrs1_348:48102094-48102244(.)) Mean nb of predicted sites per peak: 1.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_6nt_mkv4_m7	k-mer sig=1.80; evalue=0.016 tbCTTTGChk MDGCAAAGVA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor tbCTTTGChk POU5F1 MA1115.2 R 7 0.7000 0.819 0.573 NA NA Lef1 MA0768.3 D 8 0.8000 0.709 0.567 NA NA Sox11 MA0869.3 R 8 0.8000 0.702 0.562 NA NA Total matches= 14 (11 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1049 (9.19%) Max nb of predicted sites per peak: 3  (brac1_R1.macs2_peak_1900::scahrs1_100:132597576-132597726(.)) Mean nb of predicted sites per peak: 1.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_6nt_mkv4_m8	k-mer sig=1.67; evalue=0.021 ymCTCACCgg CCGGTGAGKR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ymCTCACCgg MSANTD3 MA1523.2 D 7 0.7000 0.808 0.565 NA NA ZKSCAN5 MA1652.2 R 8 0.7273 0.754 0.548 NA NA BCL11A MA2324.1 D 7 0.7000 0.744 0.521 NA NA Total matches= 15 (12 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 812 (7.11%) Max nb of predicted sites per peak: 4  (brac1_R1.macs2_peak_4169::scahrs1_138:55334-55484(.)) Mean nb of predicted sites per peak: 1.04	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_6nt_mkv4_m9	k-mer sig=1.44; evalue=0.036 dsCATTGChr YDGCAATGSH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor dsCATTGChr Ddit3::Cebpa MA0019.2 R 10 1.0000 0.739 0.739 NA NA TEAD3 MA0808.1 D 8 0.8000 0.723 0.578 NA NA TEAD4 MA0809.3 D 8 0.8000 0.717 0.574 NA NA Total matches= 18 (15 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1163 (10.18%) Max nb of predicted sites per peak: 3  (brac1_R1.macs2_peak_983::scahrs1_100:68399556-68399706(.)) Mean nb of predicted sites per peak: 1.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_6nt_mkv4_m10	k-mer sig=1.41; evalue=0.039 wrCATTACwr YWGTAATGYW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wrCATTACwr NKX6-3 MA1530.2 D 8 0.8000 0.767 0.614 NA NA HOXA5 MA0158.2 D 8 0.8000 0.765 0.612 NA NA HOXA4 MA1496.2 D 7 0.7000 0.873 0.611 NA NA Total matches= 83 (80 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 637 (5.58%) Max nb of predicted sites per peak: 3  (brac1_R1.macs2_peak_8160::scahrs1_348:22165122-22165272(.)) Mean nb of predicted sites per peak: 1.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   oligos_7nt_mkv5_m1	k-mer sig=8.29; evalue=5.1e-09 wgTACAGTAcw WGTACTGTACW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wgTACAGTAcw ZBTB32 MA1580.1 D 10 0.9091 0.927 0.843 NA NA OSR1 MA1542.2 R 8 0.7273 0.791 0.575 NA NA ZKSCAN1 MA1585.2 D 8 0.6667 0.724 0.482 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 621 (5.44%) Max nb of predicted sites per peak: 10  (brac1_R1.macs2_peak_4948::scahrs1_148:27824553-27824703(.)) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   oligos_7nt_mkv5_m2	k-mer sig=2.87; evalue=0.0013 wgTACcGTAcw WGTACGGTACW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wgTACcGTAcw ZBTB32 MA1580.1 R 10 0.9091 0.817 0.743 NA NA OSR1 MA1542.2 D 8 0.7273 0.793 0.577 NA NA ZNF784 MA1717.2 D 7 0.5833 0.787 0.459 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 675 (5.91%) Max nb of predicted sites per peak: 12  (brac1_R1.macs2_peak_4948::scahrs1_148:27824553-27824703(.)) Mean nb of predicted sites per peak: 1.94	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   oligos_7nt_mkv5_m3	k-mer sig=2.76; evalue=0.0017 rkAGTGTGAak MTTCACACTMY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rkAGTGTGAak TBX20 MA0689.1 D 11 1.0000 0.754 0.754 NA NA TBX21 MA0690.3 R 10 0.9091 0.753 0.684 NA NA EOMES MA0800.2 D 9 0.8182 0.802 0.656 NA NA Total matches= 22 (19 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 340 (2.98%) Max nb of predicted sites per peak: 3  (brac1_R1.macs2_peak_8696::scahrs1_369:281030-281180(.)) Mean nb of predicted sites per peak: 1.05	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   oligos_7nt_mkv5_m4	k-mer sig=2.76; evalue=0.0017 wtCATTATCmy RKGATAATGAW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wtCATTATCmy NKX6-3 MA1530.2 D 8 0.7273 0.838 0.609 NA NA DPRX MA1480.2 R 9 0.8182 0.728 0.596 NA NA GATA5 MA0766.3 R 8 0.7273 0.775 0.564 NA NA Total matches= 64 (61 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 236 (2.07%) Max nb of predicted sites per peak: 2  (brac1_R1.macs2_peak_9429::scahrs1_40:52612578-52612728(.)) Mean nb of predicted sites per peak: 1.03	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   oligos_7nt_mkv5_m5	k-mer sig=1.58; evalue=0.026 mwGGGTTAAak MTTTAACCCWK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mwGGGTTAAak ZNF652 MA1657.2 D 9 0.8182 0.798 0.653 NA NA PITX2 MA1547.2 R 8 0.7273 0.743 0.540 NA NA OTX2 MA0712.3 D 7 0.6364 0.752 0.479 NA NA Total matches= 13 (10 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 143 (1.25%) Max nb of predicted sites per peak: 2  (brac1_R1.macs2_peak_9737::scahrs1_510:180524-180674(.)) Mean nb of predicted sites per peak: 1.03	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 16   oligos_7nt_mkv5_m6	k-mer sig=1.45; evalue=0.035 amAAAATTAAww WWTTAATTTTKT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor amAAAATTAAww ONECUT3 MA0757.2 D 11 0.8462 0.738 0.624 NA NA Lhx3 MA0135.2 R 11 0.8462 0.709 0.600 NA NA Arid3b MA0601.2 R 7 0.5833 0.962 0.561 NA NA Total matches= 22 (19 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 521 (4.56%) Max nb of predicted sites per peak: 6  (brac1_R1.macs2_peak_5162::scahrs1_148:44319722-44319872(.)) Mean nb of predicted sites per peak: 1.26	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 17   oligos_7nt_mkv5_m7	k-mer sig=1.22; evalue=0.06 yrCACATGCmy RKGCATGTGYR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yrCACATGCmy HES6 MA1493.1 R 10 0.9091 0.733 0.667 NA NA HEY1 MA0823.1 D 10 0.9091 0.722 0.656 NA NA USF1 MA0093.4 R 10 0.9091 0.707 0.643 NA NA Total matches= 36 (33 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 461 (4.04%) Max nb of predicted sites per peak: 3  (brac1_R1.macs2_peak_1793::scahrs1_100:125849110-125849260(.)) Mean nb of predicted sites per peak: 1.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 18   oligos_7nt_mkv5_m8	k-mer sig=0.97; evalue=0.11 crCACACGCrc GYGCGTGTGYG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor crCACACGCrc KLF9 MA1107.3 D 11 1.0000 0.725 0.725 NA NA EGR2 MA0472.2 D 10 0.8333 0.715 0.596 NA NA EGR4 MA0733.2 D 10 0.8333 0.701 0.584 NA NA Total matches= 12 (9 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 275 (2.41%) Max nb of predicted sites per peak: 6  (brac1_R1.macs2_peak_8770::scahrs1_392:307249-307399(.)) Mean nb of predicted sites per peak: 1.24	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 19   oligos_7nt_mkv5_m9	k-mer sig=0.90; evalue=0.13 yrCATGCACry RYGTGCATGYR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yrCATGCACry Zfp335 MA2002.2 D 7 0.6364 0.739 0.470 NA NA MXI1 MA1108.3 D 6 0.5455 0.831 0.453 NA NA POU5F1 MA1115.2 D 7 0.6364 0.706 0.449 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 715 (6.26%) Max nb of predicted sites per peak: 4  (brac1_R1.macs2_peak_8176::scahrs1_348:23160016-23160166(.)) Mean nb of predicted sites per peak: 1.11	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 20   oligos_7nt_mkv5_m10	k-mer sig=0.71; evalue=0.19 rwCGTCATCrt AYGATGACGWY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rwCGTCATCrt Atf1 MA0604.1 R 8 0.7273 0.879 0.639 NA NA FOS MA1951.2 D 10 0.7143 0.854 0.610 NA NA FOSB::JUN MA1127.1 R 9 0.6923 0.866 0.599 NA NA Total matches= 36 (33 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 265 (2.32%) Max nb of predicted sites per peak: 8  (brac1_R1.macs2_peak_9102::scahrs1_40:27837717-27837867(.)) Mean nb of predicted sites per peak: 1.08	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 21   positions_7nt_m1	k-mer sig=0.27; evalue=0.54 srTGACGTCAys SRTGACGTCAYS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor srTGACGTCAys FOSB::JUN MA1127.1 R 11 0.9167 0.948 0.869 NA NA JUNB MA1140.3 D 11 0.9167 0.939 0.861 NA NA JUN::JUNB MA1133.2 D 11 0.9167 0.939 0.860 NA NA Total matches= 24 (21 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 176 (1.54%) Max nb of predicted sites per peak: 6  (brac1_R1.macs2_peak_5982::scahrs1_213:19477891-19478041(.)) Mean nb of predicted sites per peak: 2.09	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title iggonly_ecoli_dinithi_brac -i $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.135542_2026-03-19.135542_foDjaa/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 10 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.135542_2026-03-19.135542_foDjaa

Error: Cannot scale matrix with only null values
Error occurred on RSAT site: rsat; host server: rsat; admin: compbio@eead.csic.es

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.135542_2026-03-19.135542_foDjaa/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_sig_matrices_rescaled.tf

Warning: Input file contained not a single matrix

Error: OpenInputFile: File tmp/www-data/2026/03/19/peak-motifs.2026-03-19.135542_2026-03-19.135542_foDjaa/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_sig_sites.ft does not exist.
Error occurred on RSAT site: rsat; host server: rsat; admin: compbio@eead.csic.es

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.135542_2026-03-19.135542_foDjaa/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices.tf

Warning: Input file contained not a single matrix

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.135542_2026-03-19.135542_foDjaa/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices.tf

Warning: Input file contained not a single matrix