RSAT - peak-motifs result

Analysis: SMAD2_hela_SEACR_relaxed_peak_motifs (19/03/2026 14:36)

peak-motifs  -v 1 -title SMAD2_hela_SEACR_relaxed_peak_motifs -i $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.142603_2026-03-19.142603_jCdhEf/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions,local_words -nmotifs 10 -minol 6 -maxol 8 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.142603_2026-03-19.142603_jCdhEf

motif discovery
oligos_6nt_mkv3	oligos_6nt_mkv3_m1 assembly: gaaataaa (sig=5.03; e-value=9.3e-06) RC: tttatttc oligos_6nt_mkv3_m2 assembly: aagcaa (sig=3.47; e-value=0.00034) RC: ttgctt oligos_6nt_mkv3_m3 assembly: aaacaaa (sig=3.39; e-value=0.00041) RC: tttgttt oligos_6nt_mkv3_m4 assembly: acccaggc (sig=2.43; e-value=0.0037) RC: gcctgggt oligos_6nt_mkv3_m5 assembly: aatgtat (sig=1.93; e-value=0.012) RC: atacatt oligos_6nt_mkv3_m6 assembly: cctccc (sig=1.77; e-value=0.017) RC: gggagg oligos_6nt_mkv3_m7 assembly: cactgc (sig=1.45; e-value=0.035) RC: gcagtg oligos_6nt_mkv3_m8 assembly: attcaa (sig=1.29; e-value=0.051) RC: ttgaat oligos_6nt_mkv3_m9 assembly: atacata (sig=0.89; e-value=0.13) RC: tatgtat oligos_6nt_mkv3_m10 assembly: aaagaa (sig=0.46; e-value=0.35) RC: ttcttt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_6nt	Not a single significant pattern	[local_words_6nt]
positions_6nt	positions_6nt_m1 assembly: atgtaa (sig=0.17; e-value=0.68) RC: ttacat positions_6nt_m2 : (sig=; e-value=1) RC: positions_6nt_m3 : (sig=; e-value=1) RC: positions_6nt_m4 : (sig=; e-value=1) RC: positions_6nt_m5 : (sig=; e-value=1) RC: positions_6nt_m6 : (sig=; e-value=1) RC: positions_6nt_m7 : (sig=; e-value=1) RC: positions_6nt_m8 : (sig=; e-value=1) RC: positions_6nt_m9 : (sig=; e-value=1) RC: positions_6nt_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
oligos_7nt_mkv4	oligos_7nt_mkv4_m1 assembly: ccactgca (sig=1.40; e-value=0.04) RC: tgcagtgg oligos_7nt_mkv4_m2 assembly: aatgtat (sig=0.21; e-value=0.62) RC: atacatt oligos_7nt_mkv4_m3 assembly: gagtgca (sig=0.03; e-value=0.93) RC: tgcactc oligos_7nt_mkv4_m4 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m5 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m6 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m7 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m8 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m9 : (sig=; e-value=1) RC: oligos_7nt_mkv4_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_7nt	Not a single significant pattern	[local_words_7nt]
positions_7nt	Not a single significant pattern	[positions_7nt]
oligos_8nt_mkv5	oligos_8nt_mkv5_m1 assembly: cattttac (sig=0.29; e-value=0.51) RC: gtaaaatg oligos_8nt_mkv5_m2 assembly: ggagtgca (sig=0.26; e-value=0.55) RC: tgcactcc oligos_8nt_mkv5_m3 assembly: cactccag (sig=0.09; e-value=0.81) RC: ctggagtg oligos_8nt_mkv5_m4 : (sig=; e-value=1) RC: oligos_8nt_mkv5_m5 : (sig=; e-value=1) RC: oligos_8nt_mkv5_m6 : (sig=; e-value=1) RC: oligos_8nt_mkv5_m7 : (sig=; e-value=1) RC: oligos_8nt_mkv5_m8 : (sig=; e-value=1) RC: oligos_8nt_mkv5_m9 : (sig=; e-value=1) RC: oligos_8nt_mkv5_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
local_words_8nt	Not a single significant pattern	[local_words_8nt]
positions_8nt	Not a single significant pattern	[positions_8nt]
dyads	dyads_m1 assembly: ataaaataat (sig=25.10; e-value=7.9e-26) RC: attattttat dyads_m2 assembly: agaaataa (sig=18.65; e-value=2.2e-19) RC: ttatttct dyads_m3 assembly: acccaggca (sig=15.32; e-value=4.8e-16) RC: tgcctgggt dyads_m4 assembly: ccctcctccccctcccca (sig=14.58; e-value=2.6e-15) RC: tggggagggggaggaggg dyads_m5 assembly: cccacc (sig=14.53; e-value=3e-15) RC: ggtggg dyads_m6 assembly: aatgta (sig=13.28; e-value=5.2e-14) RC: tacatt dyads_m7 assembly: agagaa (sig=12.60; e-value=2.5e-13) RC: ttctct dyads_m8 assembly: aacaaa (sig=12.30; e-value=5e-13) RC: tttgtt dyads_m9 assembly: ccccccagccca (sig=12.05; e-value=8.9e-13) RC: tgggctgggggg dyads_m10 assembly: ataaaataaataa (sig=25.10; e-value=7.9e-26) RC: ttatttattttat	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6nt_mkv3_m1	k-mer sig=5.03; evalue=9.3e-06 awGAAATAAAww WWTTTATTTCWT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor awGAAATAAAww FOXD3 MA0041.3 D 12 0.8571 0.833 0.714 NA NA FOXD2 MA0847.4 D 11 0.9167 0.709 0.650 NA NA CDX1 MA0878.3 D 10 0.8333 0.745 0.620 NA NA Total matches= 23 (20 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 23 (10.18%) Max nb of predicted sites per peak: 8  (hg38_ct_MyTrack_6202_1) Mean nb of predicted sites per peak: 7.48	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv3_m2	k-mer sig=3.47; evalue=0.00034 wmAAGCAAtd HATTGCTTKW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wmAAGCAAtd Hmx1 MA0896.2 D 7 0.5833 0.808 0.471 NA NA Hmx3 MA0898.2 D 7 0.5833 0.790 0.461 NA NA Foxn1 MA1684.1 D 6 0.6000 0.753 0.452 NA NA Total matches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 14 (6.19%) Max nb of predicted sites per peak: 4  (hg38_ct_MyTrack_6202_5) Mean nb of predicted sites per peak: 5.86	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv3_m3	k-mer sig=3.39; evalue=0.00041 aaaAACAAAma TKTTTGTTTTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaaAACAAAma FOXD2 MA0847.4 D 11 1.0000 0.735 0.735 NA NA Sox6 MA0515.1 R 10 0.9091 0.744 0.677 NA NA Foxj3 MA0851.2 D 9 0.8182 0.813 0.665 NA NA Total matches= 37 (34 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 24 (10.62%) Max nb of predicted sites per peak: 6  (hg38_ct_MyTrack_6202_7) Mean nb of predicted sites per peak: 7.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv3_m4	k-mer sig=2.43; evalue=0.0037 kbrCCCAGGCks SMGCCTGGGYVM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor kbrCCCAGGCks ZNF213 MA2121.1 D 10 0.7143 0.936 0.669 NA NA FEZF2 MA2341.1 D 8 0.6667 0.782 0.522 NA NA ZBTB24 MA2330.1 D 9 0.6923 0.703 0.487 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (8.41%) Max nb of predicted sites per peak: 20  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 11.47	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv3_m5	k-mer sig=1.93; evalue=0.012 wwAATGTAtaw WTATACATTWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwAATGTAtaw DMRTA1 MA1707.2 R 9 0.7500 0.731 0.549 NA NA DMRT3 MA0610.2 D 7 0.6364 0.807 0.514 NA NA TEAD2 MA1121.2 R 7 0.6364 0.774 0.492 NA NA Total matches= 7 (4 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (8.41%) Max nb of predicted sites per peak: 5  (hg38_ct_MyTrack_6202_9) Mean nb of predicted sites per peak: 6.42	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_6nt_mkv3_m6	k-mer sig=1.77; evalue=0.017 csCCTCCCss SSGGGAGGSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor csCCTCCCss ZNF148 MA1653.2 D 10 1.0000 0.832 0.832 NA NA ZNF281 MA1630.3 R 10 1.0000 0.752 0.752 NA NA SP4 MA0685.2 R 9 0.9000 0.787 0.708 NA NA Total matches= 23 (20 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (8.41%) Max nb of predicted sites per peak: 28  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 12.42	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_6nt_mkv3_m7	k-mer sig=1.45; evalue=0.035 ssCACtGCvs SBGCAGTGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssCACtGCvs GFI1 MA0038.3 D 9 0.7500 0.777 0.583 NA NA Zic2 MA1629.2 D 8 0.7273 0.703 0.511 NA NA Gfi1B MA0483.2 D 8 0.6667 0.712 0.475 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (7.96%) Max nb of predicted sites per peak: 18  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 12.72	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_6nt_mkv3_m8	k-mer sig=1.29; evalue=0.051 dcATTCAAsa TSTTGAATGH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor dcATTCAAsa LIN54 MA0619.2 R 7 0.7000 0.846 0.593 NA NA ZNF35 MA2333.1 D 7 0.7000 0.715 0.500 NA NA POU5F1 MA1115.2 D 7 0.7000 0.712 0.498 NA NA Total matches= 7 (4 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (8.85%) Max nb of predicted sites per peak: 3  (hg38_ct_MyTrack_6202_3) Mean nb of predicted sites per peak: 3.15	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_6nt_mkv3_m9	k-mer sig=0.89; evalue=0.13 atATACATAta TATATGTATAT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor atATACATAta DMRT3 MA0610.2 R 7 0.6364 0.779 0.495 NA NA TBP MA0108.3 D 7 0.6364 0.732 0.466 NA NA DMRTC2 MA1479.2 D 8 0.5714 0.735 0.420 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (7.52%) Max nb of predicted sites per peak: 53  (hg38_ct_MyTrack_6202_9) Mean nb of predicted sites per peak: 9.94	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_6nt_mkv3_m10	k-mer sig=0.46; evalue=0.35 aaAAAGAAra TYTTCTTTTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaAAAGAAra ZIM3 MA1709.2 D 10 0.9091 0.734 0.668 NA NA ZNF677 MA2101.1 D 10 0.8333 0.739 0.616 NA NA ZNF384 MA1125.2 D 8 0.8000 0.766 0.613 NA NA Total matches= 10 (7 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (7.52%) Max nb of predicted sites per peak: 5  (hg38_ct_MyTrack_6202_5) Mean nb of predicted sites per peak: 6.47	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   positions_6nt_m1	k-mer sig=0.17; evalue=0.68 ahATGTAAak MTTTACATDT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ahATGTAAak POU3F1 MA0786.2 D 10 1.0000 0.741 0.741 NA NA NFIL3 MA0025.3 D 9 0.9000 0.778 0.700 NA NA POU5F1B MA0792.1 D 9 0.9000 0.754 0.679 NA NA Total matches= 47 (44 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 25 (11.06%) Max nb of predicted sites per peak: 6  (hg38_ct_MyTrack_6202_2) Mean nb of predicted sites per peak: 6.16	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   oligos_7nt_mkv4_m1	k-mer sig=1.40; evalue=0.04 gsCCACTGCasb VSTGCAGTGGSC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor gsCCACTGCasb NKX2-4 MA2003.2 D 8 0.6667 0.735 0.490 NA NA ZNF354C MA0130.1 D 6 0.5000 0.897 0.448 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (6.64%) Max nb of predicted sites per peak: 9  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 10.87	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   oligos_7nt_mkv4_m2	k-mer sig=0.21; evalue=0.62 wwAATGTATaw WTATACATTWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwAATGTATaw DMRTA1 MA1707.2 R 9 0.7500 0.704 0.528 NA NA DMRT3 MA0610.2 D 7 0.6364 0.798 0.508 NA NA TEAD2 MA1121.2 R 7 0.6364 0.761 0.484 NA NA Total matches= 7 (4 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 19 (8.41%) Max nb of predicted sites per peak: 6  (hg38_ct_MyTrack_6202_9) Mean nb of predicted sites per peak: 6.53	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   oligos_7nt_mkv4_m3	k-mer sig=0.03; evalue=0.93 kdGAGTGCAsy RSTGCACTCHM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor kdGAGTGCAsy MSANTD3 MA1523.2 R 7 0.6364 0.920 0.585 NA NA NKX2-5 MA0063.3 R 7 0.6364 0.885 0.563 NA NA NKX2-2 MA1645.2 R 8 0.7273 0.770 0.560 NA NA Total matches= 8 (5 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (7.52%) Max nb of predicted sites per peak: 7  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 4.94	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   oligos_8nt_mkv5_m1	k-mer sig=0.29; evalue=0.51 ywCATTTTACww WWGTAAAATGWR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ywCATTTTACww Yy1 MA0095.4 R 8 0.6667 0.774 0.516 NA NA HOXC13 MA0907.2 R 8 0.6154 0.825 0.508 NA NA Nfat5 MA0606.3 R 8 0.6667 0.748 0.499 NA NA Total matches= 21 (18 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (7.52%) Max nb of predicted sites per peak: 5  (hg38_ct_MyTrack_6202_11) Mean nb of predicted sites per peak: 3.12	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 16   oligos_8nt_mkv5_m2	k-mer sig=0.26; evalue=0.55 ckGGAGTGCAgk MCTGCACTCCMG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ckGGAGTGCAgk Ddit3::Cebpa MA0019.2 R 10 0.8333 0.701 0.584 NA NA TEAD3 MA0808.1 R 8 0.6667 0.708 0.472 NA NA Vdr MA0693.4 D 7 0.5833 0.806 0.470 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 17 (7.52%) Max nb of predicted sites per peak: 16  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 7.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 17   oligos_8nt_mkv5_m3	k-mer sig=0.09; evalue=0.81 ysCACTCCAGcc GGCTGGAGTGSR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ysCACTCCAGcc TEAD1 MA0090.4 D 9 0.7500 0.745 0.559 NA NA ZBTB26 MA1579.2 D 8 0.6667 0.822 0.548 NA NA NKX2-4 MA2003.2 D 8 0.6667 0.779 0.520 NA NA Total matches= 14 (11 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (8.85%) Max nb of predicted sites per peak: 10  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 8.60	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 18   dyads_m1	k-mer sig=25.10; evalue=7.9e-26 wwaTAAAATAAtww WWATTATTTTATWW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wwaTAAAATAAtww PHOX2B MA0681.3 D 12 0.8571 0.726 0.622 NA NA Mecom MA0029.2 D 11 0.7857 0.711 0.558 NA NA HOXD9 MA0913.3 D 8 0.5333 0.894 0.477 NA NA Total matches= 11 (8 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (9.29%) Max nb of predicted sites per peak: 10  (hg38_ct_MyTrack_6202_9) Mean nb of predicted sites per peak: 6.24	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 19   dyads_m2	k-mer sig=18.65; evalue=2.2e-19 arAGAAATAAaw WTTTATTTCTYT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor arAGAAATAAaw MEF2C MA0497.2 D 11 0.9167 0.723 0.663 NA NA FOXD3 MA0041.3 D 12 0.8571 0.756 0.648 NA NA CDX4 MA1473.2 D 9 0.7500 0.741 0.555 NA NA Total matches= 12 (9 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (8.85%) Max nb of predicted sites per peak: 5  (hg38_ct_MyTrack_6202_1) Mean nb of predicted sites per peak: 5.45	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 20   dyads_m3	k-mer sig=15.32; evalue=4.8e-16 tyrCCCAGGCwsg CSWGCCTGGGYRA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor tyrCCCAGGCwsg ZNF213 MA2121.1 D 11 0.7857 0.923 0.725 NA NA FEZF2 MA2341.1 D 8 0.6154 0.764 0.470 NA NA ZKSCAN3 MA1973.2 D 10 0.5882 0.783 0.461 NA NA Total matches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (9.73%) Max nb of predicted sites per peak: 23  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 9.77	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 21   dyads_m4	k-mer sig=14.58; evalue=2.6e-15 CyCCCkCCtCCsCCtCCCcasb VSTGGGGAGGSGGAGGMGGGRG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor CyCCCkCCtCCsCCtCCCcasb ZNF460 MA1596.1 D 16 0.7273 0.842 0.612 NA NA ZNF135 MA1587.1 D 14 0.6364 0.729 0.464 NA NA PATZ1 MA1961.2 R 11 0.5000 0.814 0.407 NA NA Total matches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (8.85%) Max nb of predicted sites per peak: 32  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 17.05	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 22   dyads_m5	k-mer sig=14.53; evalue=3e-15 ssCCCACCss SSGGTGGGSS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssCCCACCss KLF5 MA0599.1 D 10 1.0000 0.792 0.792 NA NA PATZ1 MA1961.2 R 10 0.9091 0.807 0.734 NA NA KLF4 MA0039.5 D 8 0.8000 0.878 0.702 NA NA Total matches= 36 (33 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (7.96%) Max nb of predicted sites per peak: 27  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 11.61	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 23   dyads_m6	k-mer sig=13.28; evalue=5.2e-14 wrAATGTAtr YATACATTYW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wrAATGTAtr TEAD2 MA1121.2 R 7 0.7000 0.800 0.560 NA NA DMRTA1 MA1707.2 R 8 0.6667 0.780 0.520 NA NA TEAD4 MA0809.3 R 7 0.6364 0.786 0.500 NA NA Total matches= 12 (9 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (9.73%) Max nb of predicted sites per peak: 7  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 8.36	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 24   dyads_m7	k-mer sig=12.60; evalue=2.5e-13 rsAGAGAArr YYTTCTCTSY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rsAGAGAArr ZNF768 MA1731.2 R 9 0.9000 0.739 0.665 NA NA PRDM1 MA0508.4 R 7 0.7000 0.873 0.611 NA NA Stat2 MA1623.2 D 9 0.8182 0.710 0.581 NA NA Total matches= 8 (5 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (9.29%) Max nb of predicted sites per peak: 7  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 7.67	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 25   dyads_m8	k-mer sig=12.30; evalue=5e-13 aaAACAAAma TKTTTGTTTT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor aaAACAAAma Sox6 MA0515.1 R 10 1.0000 0.745 0.745 NA NA SOX4 MA0867.3 D 8 0.8000 0.870 0.696 NA NA FOXD2 MA0847.4 D 10 0.9091 0.750 0.682 NA NA Total matches= 39 (36 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27 (11.95%) Max nb of predicted sites per peak: 6  (hg38_ct_MyTrack_6202_7) Mean nb of predicted sites per peak: 5.63	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 26   dyads_m9	k-mer sig=12.05; evalue=8.9e-13 csCCCCCCaGCCCmss SSKGGGCTGGGGGGSG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor csCCCCCCaGCCCmss PRDM9 MA1723.2 R 16 0.8000 0.725 0.580 NA NA PATZ1 MA1961.2 R 11 0.6875 0.750 0.516 NA NA ZNF740 MA0753.3 D 10 0.6250 0.777 0.485 NA NA Total matches= 19 (16 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (8.85%) Max nb of predicted sites per peak: 46  (hg38_ct_MyTrack_6202_0) Mean nb of predicted sites per peak: 13.65	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 27   dyads_m10	k-mer sig=25.10; evalue=7.9e-26 waatAAaAtaaAtAaww WWTTATTTATTTTATTW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor waatAAaAtaaAtAaww ONECUT3 MA0757.2 D 12 0.7059 0.767 0.542 NA NA FOXD3 MA0041.3 D 13 0.7222 0.728 0.526 NA NA PHOX2B MA0681.3 D 12 0.7059 0.702 0.496 NA NA Total matches= 10 (7 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (9.73%) Max nb of predicted sites per peak: 19  (hg38_ct_MyTrack_6202_9) Mean nb of predicted sites per peak: 11.64	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title SMAD2_hela_SEACR_relaxed_peak_motifs -i $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.142603_2026-03-19.142603_jCdhEf/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,dyads,positions,local_words -nmotifs 10 -minol 6 -maxol 8 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.142603_2026-03-19.142603_jCdhEf

Warning: Not a single pattern was found in file tmp/www-data/2026/03/19/peak-motifs.2026-03-19.142603_2026-03-19.142603_jCdhEf/results/positions_7nt/peak-motifs_positions-2str-noov_7nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/03/19/peak-motifs.2026-03-19.142603_2026-03-19.142603_jCdhEf/results/positions_8nt/peak-motifs_positions-2str-noov_8nt_ci50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/03/19/peak-motifs.2026-03-19.142603_2026-03-19.142603_jCdhEf/results/local_words_6nt/peak-motifs_local_words-2str-noov_6nt_windgroup50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/03/19/peak-motifs.2026-03-19.142603_2026-03-19.142603_jCdhEf/results/local_words_7nt/peak-motifs_local_words-2str-noov_7nt_windgroup50.tab

Warning: Not a single pattern was found in file tmp/www-data/2026/03/19/peak-motifs.2026-03-19.142603_2026-03-19.142603_jCdhEf/results/local_words_8nt/peak-motifs_local_words-2str-noov_8nt_windgroup50.tab