RSAT - peak-motifs result

Analysis: all_ecoli_dinithi_brac (19/03/2026 14:43)

peak-motifs  -v 1 -title all_ecoli_dinithi_brac -i $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.143203_2026-03-19.143203_G32OYO/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 10 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.143203_2026-03-19.143203_G32OYO

motif discovery
oligos_6nt_mkv4	oligos_6nt_mkv4_m1 assembly: tactgta (sig=19.63; e-value=2.3e-20) RC: tacagta oligos_6nt_mkv4_m2 assembly: taatta (sig=4.85; e-value=1.4e-05) RC: taatta oligos_6nt_mkv4_m3 assembly: ccatgg (sig=4.67; e-value=2.1e-05) RC: ccatgg oligos_6nt_mkv4_m4 assembly: cttatc (sig=3.10; e-value=0.00079) RC: gataag oligos_6nt_mkv4_m5 assembly: acatgt (sig=2.07; e-value=0.0085) RC: acatgt oligos_6nt_mkv4_m6 assembly: accgta (sig=1.73; e-value=0.019) RC: tacggt oligos_6nt_mkv4_m7 assembly: ctcacc (sig=1.67; e-value=0.021) RC: ggtgag oligos_6nt_mkv4_m8 assembly: ctttgc (sig=1.29; e-value=0.051) RC: gcaaag oligos_6nt_mkv4_m9 assembly: cattac (sig=1.29; e-value=0.051) RC: gtaatg oligos_6nt_mkv4_m10 assembly: cattgc (sig=1.11; e-value=0.078) RC: gcaatg	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_6nt	positions_6nt_m1 assembly: aaaaaa (sig=0.70; e-value=0.2) RC: tttttt positions_6nt_m2 assembly: gataaa (sig=0.15; e-value=0.71) RC: tttatc positions_6nt_m3 assembly: acacac (sig=0.03; e-value=0.93) RC: gtgtgt positions_6nt_m4 assembly: agccct (sig=0.00; e-value=1) RC: agggct positions_6nt_m5 : (sig=; e-value=1) RC: positions_6nt_m6 : (sig=; e-value=1) RC: positions_6nt_m7 : (sig=; e-value=1) RC: positions_6nt_m8 : (sig=; e-value=1) RC: positions_6nt_m9 : (sig=; e-value=1) RC: positions_6nt_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
oligos_7nt_mkv5	oligos_7nt_mkv5_m1 assembly: tacagta (sig=7.79; e-value=1.6e-08) RC: tactgta oligos_7nt_mkv5_m2 assembly: taccgta (sig=3.72; e-value=0.00019) RC: tacggta oligos_7nt_mkv5_m3 assembly: agtgtga (sig=3.06; e-value=0.00087) RC: tcacact oligos_7nt_mkv5_m4 assembly: cattatc (sig=2.42; e-value=0.0038) RC: gataatg oligos_7nt_mkv5_m5 assembly: aaaattaa (sig=1.93; e-value=0.012) RC: ttaatttt oligos_7nt_mkv5_m6 assembly: gggttaa (sig=1.64; e-value=0.023) RC: ttaaccc oligos_7nt_mkv5_m7 assembly: cacatgc (sig=1.58; e-value=0.026) RC: gcatgtg oligos_7nt_mkv5_m8 assembly: cacacgc (sig=0.53; e-value=0.3) RC: gcgtgtg oligos_7nt_mkv5_m9 assembly: catgcac (sig=0.47; e-value=0.34) RC: gtgcatg oligos_7nt_mkv5_m10 assembly: acttgta (sig=0.47; e-value=0.34) RC: tacaagt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
positions_7nt	positions_7nt_m1 assembly: gcacgtgc (sig=0.38; e-value=0.42) RC: gcacgtgc positions_7nt_m2 : (sig=; e-value=1) RC: positions_7nt_m3 : (sig=; e-value=1) RC: positions_7nt_m4 : (sig=; e-value=1) RC: positions_7nt_m5 : (sig=; e-value=1) RC: positions_7nt_m6 : (sig=; e-value=1) RC: positions_7nt_m7 : (sig=; e-value=1) RC: positions_7nt_m8 : (sig=; e-value=1) RC: positions_7nt_m9 : (sig=; e-value=1) RC: positions_7nt_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6nt_mkv4_m1	k-mer sig=19.63; evalue=2.3e-20 wgTACTGTAcw WGTACAGTACW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wgTACTGTAcw ZBTB32 MA1580.1 R 10 0.9091 0.934 0.849 NA NA OSR1 MA1542.2 D 8 0.7273 0.782 0.569 NA NA ZKSCAN1 MA1585.2 R 8 0.6667 0.716 0.477 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 666 (5.85%) Max nb of predicted sites per peak: 12  (brac1_R1.macs2_peak_4900::scahrs1_148:27824553-27824703(.)) Mean nb of predicted sites per peak: 1.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_mkv4_m2	k-mer sig=4.85; evalue=1.4e-05 waTAATTAtw WATAATTATW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor waTAATTAtw Lhx1 MA1518.3 D 10 1.0000 0.820 0.820 NA NA LHX6 MA0658.2 D 8 0.8000 0.887 0.710 NA NA Alx1 MA0854.2 D 8 0.8000 0.880 0.704 NA NA Total matches= 100 (97 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 380 (3.34%) Max nb of predicted sites per peak: 6  (brac1_R1.macs2_peak_6773::scahrs1_273:36782728-36782878(.)) Mean nb of predicted sites per peak: 2.10	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_mkv4_m3	k-mer sig=4.67; evalue=2.1e-05 trCCATGGya TRCCATGGYA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor trCCATGGya RFX2 MA0600.3 R 10 0.7143 0.875 0.625 NA NA RFX5 MA0510.3 R 10 0.7143 0.830 0.593 NA NA RFX1 MA0509.3 R 10 0.6250 0.848 0.530 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 590 (5.18%) Max nb of predicted sites per peak: 6  (brac1_R1.macs2_peak_4724::scahrs1_148:11986887-11987037(.)) Mean nb of predicted sites per peak: 2.09	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_mkv4_m4	k-mer sig=3.10; evalue=0.00079 ytCTTATCcr YGGATAAGAR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ytCTTATCcr GATA6 MA1104.3 D 8 0.8000 0.917 0.734 NA NA TRPS1 MA1970.2 D 8 0.8000 0.916 0.733 NA NA Gata3 MA0037.5 D 8 0.8000 0.911 0.729 NA NA Total matches= 13 (10 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 439 (3.86%) Max nb of predicted sites per peak: 4  (brac1_R1.macs2_peak_3266::scahrs1_11:2261131-2261281(.)) Mean nb of predicted sites per peak: 1.08	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_mkv4_m5	k-mer sig=2.07; evalue=0.0085 gyACATGTrc GYACATGTRC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor gyACATGTrc MXI1 MA1108.3 D 6 0.6000 0.904 0.543 NA NA CLOCK MA0819.3 R 7 0.7000 0.710 0.497 NA NA TP63 MA0525.2 R 9 0.4737 0.896 0.424 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 567 (4.98%) Max nb of predicted sites per peak: 6  (brac1_R1.macs2_peak_641::scahrs1_100:44358047-44358197(.)) Mean nb of predicted sites per peak: 2.17	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_6nt_mkv4_m6	k-mer sig=1.73; evalue=0.019 stACCGTAym KRTACGGTAS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor stACCGTAym ZBTB32 MA1580.1 R 10 1.0000 0.737 0.737 NA NA OSR1 MA1542.2 D 7 0.6364 0.777 0.494 NA NA ZNF784 MA1717.2 D 6 0.5000 0.867 0.433 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 460 (4.04%) Max nb of predicted sites per peak: 8  (brac1_R1.macs2_peak_11175::scahrs1_84:360779-360929(.)) Mean nb of predicted sites per peak: 1.42	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_6nt_mkv4_m7	k-mer sig=1.67; evalue=0.021 yhCTCACCgg CCGGTGAGDR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yhCTCACCgg MSANTD3 MA1523.2 D 7 0.7000 0.810 0.567 NA NA ZKSCAN5 MA1652.2 R 8 0.7273 0.749 0.544 NA NA BCL11A MA2324.1 D 7 0.7000 0.741 0.519 NA NA Total matches= 15 (12 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 742 (6.52%) Max nb of predicted sites per peak: 4  (brac1_R1.macs2_peak_4112::scahrs1_138:55334-55484(.)) Mean nb of predicted sites per peak: 1.04	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_6nt_mkv4_m8	k-mer sig=1.29; evalue=0.051 tyCTTTGChk MDGCAAAGRA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor tyCTTTGChk POU5F1 MA1115.2 R 7 0.7000 0.819 0.573 NA NA Lef1 MA0768.3 D 8 0.8000 0.708 0.566 NA NA Sox11 MA0869.3 R 8 0.8000 0.702 0.562 NA NA Total matches= 14 (11 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1043 (9.17%) Max nb of predicted sites per peak: 3  (brac1_R1.macs2_peak_1863::scahrs1_100:132597576-132597726(.)) Mean nb of predicted sites per peak: 1.05	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_6nt_mkv4_m9	k-mer sig=1.29; evalue=0.051 wrCATTACar YTGTAATGYW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wrCATTACar NKX6-3 MA1530.2 D 8 0.8000 0.769 0.615 NA NA HOXA5 MA0158.2 D 8 0.8000 0.763 0.611 NA NA HOXA4 MA1496.2 D 7 0.7000 0.870 0.609 NA NA Total matches= 80 (77 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 664 (5.84%) Max nb of predicted sites per peak: 3  (brac1_R1.macs2_peak_8123::scahrs1_348:22165122-22165272(.)) Mean nb of predicted sites per peak: 1.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_6nt_mkv4_m10	k-mer sig=1.11; evalue=0.078 dsCATTGChr YDGCAATGSH	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor dsCATTGChr Ddit3::Cebpa MA0019.2 R 10 1.0000 0.741 0.741 NA NA TEAD3 MA0808.1 D 8 0.8000 0.723 0.579 NA NA TEAD4 MA0809.3 D 8 0.8000 0.718 0.574 NA NA Total matches= 18 (15 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 1152 (10.12%) Max nb of predicted sites per peak: 3  (brac1_R1.macs2_peak_969::scahrs1_100:68399556-68399706(.)) Mean nb of predicted sites per peak: 1.07	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   oligos_7nt_mkv5_m1	k-mer sig=7.79; evalue=1.6e-08 wgTACAGTAcw WGTACTGTACW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wgTACAGTAcw ZBTB32 MA1580.1 D 10 0.9091 0.927 0.842 NA NA OSR1 MA1542.2 R 8 0.7273 0.791 0.576 NA NA ZKSCAN1 MA1585.2 D 8 0.6667 0.723 0.482 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 631 (5.55%) Max nb of predicted sites per peak: 10  (brac1_R1.macs2_peak_4900::scahrs1_148:27824553-27824703(.)) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   oligos_7nt_mkv5_m2	k-mer sig=3.72; evalue=0.00019 wgTACcGTAcw WGTACGGTACW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wgTACcGTAcw ZBTB32 MA1580.1 R 10 0.9091 0.817 0.742 NA NA OSR1 MA1542.2 D 8 0.7273 0.794 0.577 NA NA ZNF784 MA1717.2 D 7 0.5833 0.786 0.459 NA NA Total matches= 3		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 687 (6.04%) Max nb of predicted sites per peak: 12  (brac1_R1.macs2_peak_4900::scahrs1_148:27824553-27824703(.)) Mean nb of predicted sites per peak: 1.96	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   oligos_7nt_mkv5_m3	k-mer sig=3.06; evalue=0.00087 rkAGTGTGAag CTTCACACTMY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rkAGTGTGAag TBX20 MA0689.1 D 11 1.0000 0.756 0.756 NA NA TBX21 MA0690.3 R 10 0.9091 0.756 0.687 NA NA EOMES MA0800.2 D 9 0.8182 0.804 0.658 NA NA Total matches= 22 (19 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 349 (3.07%) Max nb of predicted sites per peak: 3  (brac1_R1.macs2_peak_8670::scahrs1_369:281030-281180(.)) Mean nb of predicted sites per peak: 1.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   oligos_7nt_mkv5_m4	k-mer sig=2.42; evalue=0.0038 wtCATTATCmy RKGATAATGAW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wtCATTATCmy NKX6-3 MA1530.2 D 8 0.7273 0.837 0.609 NA NA DPRX MA1480.2 R 9 0.8182 0.728 0.596 NA NA GATA5 MA0766.3 R 8 0.7273 0.775 0.564 NA NA Total matches= 64 (61 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 232 (2.04%) Max nb of predicted sites per peak: 2  (brac1_R1.macs2_peak_9400::scahrs1_40:52612578-52612728(.)) Mean nb of predicted sites per peak: 1.03	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   oligos_7nt_mkv5_m5	k-mer sig=1.93; evalue=0.012 amAAAATTAAww WWTTAATTTTKT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor amAAAATTAAww ONECUT3 MA0757.2 D 11 0.8462 0.737 0.624 NA NA Lhx3 MA0135.2 R 11 0.8462 0.709 0.600 NA NA Arid3b MA0601.2 R 7 0.5833 0.962 0.561 NA NA Total matches= 23 (20 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 507 (4.46%) Max nb of predicted sites per peak: 6  (brac1_R1.macs2_peak_5119::scahrs1_148:44319722-44319872(.)) Mean nb of predicted sites per peak: 1.26	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 16   oligos_7nt_mkv5_m6	k-mer sig=1.64; evalue=0.023 mwGGGTTAAak MTTTAACCCWK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mwGGGTTAAak ZNF652 MA1657.2 D 9 0.8182 0.796 0.651 NA NA PITX2 MA1547.2 R 8 0.7273 0.743 0.540 NA NA OTX2 MA0712.3 D 7 0.6364 0.752 0.478 NA NA Total matches= 13 (10 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 147 (1.29%) Max nb of predicted sites per peak: 2  (brac1_R1.macs2_peak_9710::scahrs1_510:180524-180674(.)) Mean nb of predicted sites per peak: 1.03	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 17   oligos_7nt_mkv5_m7	k-mer sig=1.58; evalue=0.026 yrCACATGCmy RKGCATGTGYR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yrCACATGCmy HES6 MA1493.1 R 10 0.9091 0.733 0.666 NA NA HEY1 MA0823.1 D 10 0.9091 0.722 0.656 NA NA USF1 MA0093.4 R 10 0.9091 0.707 0.642 NA NA Total matches= 36 (33 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 457 (4.02%) Max nb of predicted sites per peak: 3  (brac1_R1.macs2_peak_1757::scahrs1_100:125849110-125849260(.)) Mean nb of predicted sites per peak: 1.05	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 18   oligos_7nt_mkv5_m8	k-mer sig=0.53; evalue=0.3 crCACACGCrc GYGCGTGTGYG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor crCACACGCrc KLF9 MA1107.3 D 11 1.0000 0.724 0.724 NA NA EGR2 MA0472.2 D 10 0.8333 0.715 0.595 NA NA EGR4 MA0733.2 D 10 0.8333 0.700 0.583 NA NA Total matches= 12 (9 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 265 (2.33%) Max nb of predicted sites per peak: 6  (brac1_R1.macs2_peak_8747::scahrs1_392:307249-307399(.)) Mean nb of predicted sites per peak: 1.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 19   oligos_7nt_mkv5_m9	k-mer sig=0.47; evalue=0.34 yrCATGCACry RYGTGCATGYR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yrCATGCACry Zfp335 MA2002.2 D 7 0.6364 0.738 0.470 NA NA MXI1 MA1108.3 D 6 0.5455 0.832 0.454 NA NA POU5F1 MA1115.2 D 7 0.6364 0.706 0.449 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 725 (6.37%) Max nb of predicted sites per peak: 4  (brac1_R1.macs2_peak_8140::scahrs1_348:23160016-23160166(.)) Mean nb of predicted sites per peak: 1.12	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 20   oligos_7nt_mkv5_m10	k-mer sig=0.47; evalue=0.34 gtACTTGTAcw WGTACAAGTAC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor gtACTTGTAcw DMRTA2 MA1478.2 R 6 0.5455 0.790 0.431 NA NA DMRT3 MA0610.2 D 6 0.5000 0.825 0.412 NA NA Total matches= 2		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 614 (5.40%) Max nb of predicted sites per peak: 11  (brac1_R1.macs2_peak_3051::scahrs1_106:31977814-31977964(.)) Mean nb of predicted sites per peak: 1.52	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 21   positions_7nt_m1	k-mer sig=0.38; evalue=0.42 stGCACGTGCas STGCACGTGCAS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor stGCACGTGCas HES7 MA0822.1 D 12 1.0000 0.839 0.839 NA NA HEY1 MA0823.1 R 10 0.8333 0.860 0.716 NA NA HES5 MA0821.2 D 10 0.8333 0.858 0.715 NA NA Total matches= 39 (36 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 137 (1.20%) Max nb of predicted sites per peak: 10  (brac1_R1.macs2_peak_7770::scahrs1_337:59273-59423(.)) Mean nb of predicted sites per peak: 2.07	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title all_ecoli_dinithi_brac -i $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.143203_2026-03-19.143203_G32OYO/peak-motifspeak_seq -max_seq_len 1000 -markov auto -disco oligos,positions -nmotifs 10 -minol 6 -maxol 7 -no_merge_lengths -2str -origin center -motif_db JASPAR2024_CORE_vertebrates_non-redundant tf $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.143203_2026-03-19.143203_G32OYO

Error: Cannot scale matrix with only null values
Error occurred on RSAT site: rsat; host server: rsat; admin: compbio@eead.csic.es

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.143203_2026-03-19.143203_G32OYO/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_sig_matrices_rescaled.tf

Warning: Input file contained not a single matrix

Error: OpenInputFile: File tmp/www-data/2026/03/19/peak-motifs.2026-03-19.143203_2026-03-19.143203_G32OYO/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_sig_sites.ft does not exist.
Error occurred on RSAT site: rsat; host server: rsat; admin: compbio@eead.csic.es

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.143203_2026-03-19.143203_G32OYO/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices.tf

Warning: Input file contained not a single matrix

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.143203_2026-03-19.143203_G32OYO/results/positions_6nt/peak-motifs_positions-2str-noov_6nt_ci50_pssm_count_matrices.tf

Warning: Input file contained not a single matrix