Motif	Logo	3 Top hits in databases
oligos_6nt_mkv1_m1		versus regulonDB: no match versus regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2025-05.tf_-task_purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db_-prefix_peak-motifs_-noov_-img_format_png__-outdir_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq_|_perl_-pe_'s|$RSAT/(public_html/)*||g'_>>_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifs_synthesis.html;_echo_'[RSAT]_peak-motifs_2026-03-19.185612___Command:_nice_-n_19_$RSAT/perl-scripts/peak-motifs__-v_1_-title_'Fis_RegulonDB_sites'__-i_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifspeak_seq_-markov_auto_-disco_oligos,dyads,positions_-nmotifs_5__-minol_6_-maxol_7__-no_merge_lengths_-2str__-origin_center__-motif_db_regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2015-08-07.tf_-motif_db_regulonDB:
oligos_6nt_mkv1_m2		versus regulonDB: TorR, versus regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2025-05.tf_-task_purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db_-prefix_peak-motifs_-noov_-img_format_png__-outdir_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq_|_perl_-pe_'s|$RSAT/(public_html/)*||g'_>>_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifs_synthesis.html;_echo_'[RSAT]_peak-motifs_2026-03-19.185612___Command:_nice_-n_19_$RSAT/perl-scripts/peak-motifs__-v_1_-title_'Fis_RegulonDB_sites'__-i_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifspeak_seq_-markov_auto_-disco_oligos,dyads,positions_-nmotifs_5__-minol_6_-maxol_7__-no_merge_lengths_-2str__-origin_center__-motif_db_regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2015-08-07.tf_-motif_db_regulonDB:
oligos_6nt_mkv1_m3		versus regulonDB: no match versus regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2025-05.tf_-task_purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db_-prefix_peak-motifs_-noov_-img_format_png__-outdir_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq_|_perl_-pe_'s|$RSAT/(public_html/)*||g'_>>_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifs_synthesis.html;_echo_'[RSAT]_peak-motifs_2026-03-19.185612___Command:_nice_-n_19_$RSAT/perl-scripts/peak-motifs__-v_1_-title_'Fis_RegulonDB_sites'__-i_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifspeak_seq_-markov_auto_-disco_oligos,dyads,positions_-nmotifs_5__-minol_6_-maxol_7__-no_merge_lengths_-2str__-origin_center__-motif_db_regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2015-08-07.tf_-motif_db_regulonDB:
oligos_6nt_mkv1_m4		versus regulonDB: Dan, HNS, PhoP, versus regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2025-05.tf_-task_purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db_-prefix_peak-motifs_-noov_-img_format_png__-outdir_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq_|_perl_-pe_'s|$RSAT/(public_html/)*||g'_>>_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifs_synthesis.html;_echo_'[RSAT]_peak-motifs_2026-03-19.185612___Command:_nice_-n_19_$RSAT/perl-scripts/peak-motifs__-v_1_-title_'Fis_RegulonDB_sites'__-i_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifspeak_seq_-markov_auto_-disco_oligos,dyads,positions_-nmotifs_5__-minol_6_-maxol_7__-no_merge_lengths_-2str__-origin_center__-motif_db_regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2015-08-07.tf_-motif_db_regulonDB:
oligos_6nt_mkv1_m5		versus regulonDB: UxuR, UlaR, versus regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2025-05.tf_-task_purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db_-prefix_peak-motifs_-noov_-img_format_png__-outdir_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq_|_perl_-pe_'s|$RSAT/(public_html/)*||g'_>>_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifs_synthesis.html;_echo_'[RSAT]_peak-motifs_2026-03-19.185612___Command:_nice_-n_19_$RSAT/perl-scripts/peak-motifs__-v_1_-title_'Fis_RegulonDB_sites'__-i_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifspeak_seq_-markov_auto_-disco_oligos,dyads,positions_-nmotifs_5__-minol_6_-maxol_7__-no_merge_lengths_-2str__-origin_center__-motif_db_regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2015-08-07.tf_-motif_db_regulonDB:
positions_6nt_m1		versus regulonDB: Fis, IclR, PuuR, versus regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2025-05.tf_-task_purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db_-prefix_peak-motifs_-noov_-img_format_png__-outdir_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq_|_perl_-pe_'s|$RSAT/(public_html/)*||g'_>>_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifs_synthesis.html;_echo_'[RSAT]_peak-motifs_2026-03-19.185612___Command:_nice_-n_19_$RSAT/perl-scripts/peak-motifs__-v_1_-title_'Fis_RegulonDB_sites'__-i_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifspeak_seq_-markov_auto_-disco_oligos,dyads,positions_-nmotifs_5__-minol_6_-maxol_7__-no_merge_lengths_-2str__-origin_center__-motif_db_regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2015-08-07.tf_-motif_db_regulonDB:
oligos_7nt_mkv1_m1		versus regulonDB: no match versus regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2025-05.tf_-task_purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db_-prefix_peak-motifs_-noov_-img_format_png__-outdir_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq_|_perl_-pe_'s|$RSAT/(public_html/)*||g'_>>_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifs_synthesis.html;_echo_'[RSAT]_peak-motifs_2026-03-19.185612___Command:_nice_-n_19_$RSAT/perl-scripts/peak-motifs__-v_1_-title_'Fis_RegulonDB_sites'__-i_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifspeak_seq_-markov_auto_-disco_oligos,dyads,positions_-nmotifs_5__-minol_6_-maxol_7__-no_merge_lengths_-2str__-origin_center__-motif_db_regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2015-08-07.tf_-motif_db_regulonDB:
oligos_7nt_mkv1_m2		versus regulonDB: TorR, versus regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2025-05.tf_-task_purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db_-prefix_peak-motifs_-noov_-img_format_png__-outdir_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq_|_perl_-pe_'s|$RSAT/(public_html/)*||g'_>>_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifs_synthesis.html;_echo_'[RSAT]_peak-motifs_2026-03-19.185612___Command:_nice_-n_19_$RSAT/perl-scripts/peak-motifs__-v_1_-title_'Fis_RegulonDB_sites'__-i_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifspeak_seq_-markov_auto_-disco_oligos,dyads,positions_-nmotifs_5__-minol_6_-maxol_7__-no_merge_lengths_-2str__-origin_center__-motif_db_regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2015-08-07.tf_-motif_db_regulonDB:
oligos_7nt_mkv1_m3		versus regulonDB: no match versus regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2025-05.tf_-task_purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db_-prefix_peak-motifs_-noov_-img_format_png__-outdir_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq_|_perl_-pe_'s|$RSAT/(public_html/)*||g'_>>_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifs_synthesis.html;_echo_'[RSAT]_peak-motifs_2026-03-19.185612___Command:_nice_-n_19_$RSAT/perl-scripts/peak-motifs__-v_1_-title_'Fis_RegulonDB_sites'__-i_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifspeak_seq_-markov_auto_-disco_oligos,dyads,positions_-nmotifs_5__-minol_6_-maxol_7__-no_merge_lengths_-2str__-origin_center__-motif_db_regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2015-08-07.tf_-motif_db_regulonDB:
oligos_7nt_mkv1_m4		versus regulonDB: DnaA, UxuR, versus regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2025-05.tf_-task_purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db_-prefix_peak-motifs_-noov_-img_format_png__-outdir_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq_|_perl_-pe_'s|$RSAT/(public_html/)*||g'_>>_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifs_synthesis.html;_echo_'[RSAT]_peak-motifs_2026-03-19.185612___Command:_nice_-n_19_$RSAT/perl-scripts/peak-motifs__-v_1_-title_'Fis_RegulonDB_sites'__-i_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifspeak_seq_-markov_auto_-disco_oligos,dyads,positions_-nmotifs_5__-minol_6_-maxol_7__-no_merge_lengths_-2str__-origin_center__-motif_db_regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2015-08-07.tf_-motif_db_regulonDB:
oligos_7nt_mkv1_m5		versus regulonDB: no match versus regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2025-05.tf_-task_purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db_-prefix_peak-motifs_-noov_-img_format_png__-outdir_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq_|_perl_-pe_'s|$RSAT/(public_html/)*||g'_>>_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifs_synthesis.html;_echo_'[RSAT]_peak-motifs_2026-03-19.185612___Command:_nice_-n_19_$RSAT/perl-scripts/peak-motifs__-v_1_-title_'Fis_RegulonDB_sites'__-i_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifspeak_seq_-markov_auto_-disco_oligos,dyads,positions_-nmotifs_5__-minol_6_-maxol_7__-no_merge_lengths_-2str__-origin_center__-motif_db_regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2015-08-07.tf_-motif_db_regulonDB:
dyads_m1		versus regulonDB: Fis, versus regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2025-05.tf_-task_purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db_-prefix_peak-motifs_-noov_-img_format_png__-outdir_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq_|_perl_-pe_'s|$RSAT/(public_html/)*||g'_>>_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifs_synthesis.html;_echo_'[RSAT]_peak-motifs_2026-03-19.185612___Command:_nice_-n_19_$RSAT/perl-scripts/peak-motifs__-v_1_-title_'Fis_RegulonDB_sites'__-i_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifspeak_seq_-markov_auto_-disco_oligos,dyads,positions_-nmotifs_5__-minol_6_-maxol_7__-no_merge_lengths_-2str__-origin_center__-motif_db_regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2015-08-07.tf_-motif_db_regulonDB:
dyads_m2		versus regulonDB: AsnC, versus regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2025-05.tf_-task_purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db_-prefix_peak-motifs_-noov_-img_format_png__-outdir_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq_|_perl_-pe_'s|$RSAT/(public_html/)*||g'_>>_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifs_synthesis.html;_echo_'[RSAT]_peak-motifs_2026-03-19.185612___Command:_nice_-n_19_$RSAT/perl-scripts/peak-motifs__-v_1_-title_'Fis_RegulonDB_sites'__-i_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifspeak_seq_-markov_auto_-disco_oligos,dyads,positions_-nmotifs_5__-minol_6_-maxol_7__-no_merge_lengths_-2str__-origin_center__-motif_db_regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2015-08-07.tf_-motif_db_regulonDB:
dyads_m3		versus regulonDB: no match versus regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2025-05.tf_-task_purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db_-prefix_peak-motifs_-noov_-img_format_png__-outdir_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq_|_perl_-pe_'s|$RSAT/(public_html/)*||g'_>>_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifs_synthesis.html;_echo_'[RSAT]_peak-motifs_2026-03-19.185612___Command:_nice_-n_19_$RSAT/perl-scripts/peak-motifs__-v_1_-title_'Fis_RegulonDB_sites'__-i_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifspeak_seq_-markov_auto_-disco_oligos,dyads,positions_-nmotifs_5__-minol_6_-maxol_7__-no_merge_lengths_-2str__-origin_center__-motif_db_regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2015-08-07.tf_-motif_db_regulonDB:
dyads_m4		versus regulonDB: Fis, versus regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2025-05.tf_-task_purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db_-prefix_peak-motifs_-noov_-img_format_png__-outdir_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq_|_perl_-pe_'s|$RSAT/(public_html/)*||g'_>>_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifs_synthesis.html;_echo_'[RSAT]_peak-motifs_2026-03-19.185612___Command:_nice_-n_19_$RSAT/perl-scripts/peak-motifs__-v_1_-title_'Fis_RegulonDB_sites'__-i_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifspeak_seq_-markov_auto_-disco_oligos,dyads,positions_-nmotifs_5__-minol_6_-maxol_7__-no_merge_lengths_-2str__-origin_center__-motif_db_regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2015-08-07.tf_-motif_db_regulonDB:
dyads_m5		versus regulonDB: no match versus regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2025-05.tf_-task_purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db_-prefix_peak-motifs_-noov_-img_format_png__-outdir_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq_|_perl_-pe_'s|$RSAT/(public_html/)*||g'_>>_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifs_synthesis.html;_echo_'[RSAT]_peak-motifs_2026-03-19.185612___Command:_nice_-n_19_$RSAT/perl-scripts/peak-motifs__-v_1_-title_'Fis_RegulonDB_sites'__-i_$RSAT/public_html/tmp/www-data/2026/03/19/peak-motifs.2026-03-19.185612_2026-03-19.185612_KDREbq/peak-motifspeak_seq_-markov_auto_-disco_oligos,dyads,positions_-nmotifs_5__-minol_6_-maxol_7__-no_merge_lengths_-2str__-origin_center__-motif_db_regulonDB_tf_$RSAT/public_html/motif_databases/REGULONDB/regulonDB_2015-08-07.tf_-motif_db_regulonDB: