peak-motifs flanks_v_centers_corrected_mar

Sequence composition (test sequences)

Nb of peaks: 7480
Total seq. size: 7473 kb
Min length: 999 bp
Mean length: 999 bp
Max length: 999 bp [ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Sequence composition (ctrl sequences)

Nb of peaks: 3942
Total seq. size: 3938 kb
Min length: 999 bp
Mean length: 999 bp
Max length: 999 bp [ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Motif discovery

Motif 1 oligos_6-8nt_m1

k-mer sig=72.08; evalue=8.3e-73

wwaaTTAwAATTATATTTwTAAww

WWTTAWAAATATAATTWTAATTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3948 (52.78%)
Max nb of predicted sites per peak: 1332
(chr22:30454200-30455200)
Mean nb of predicted sites per peak: 16.87

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6-8nt_m2

k-mer sig=72.08; evalue=8.3e-73

wwAAwwAAAWAwAwAAwwAwAtww

WWATWTWWTTWTWTWTTTWWTTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4368 (58.40%)
Max nb of predicted sites per peak: 1281
(chr22:30454200-30455200)
Mean nb of predicted sites per peak: 17.68

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6-8nt_m3

k-mer sig=72.08; evalue=8.3e-73

wwAwwTAAAAAAwTATaTtTTTww

WWAAAAATATAWTTTTTTAWWTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3542 (47.35%)
Max nb of predicted sites per peak: 1335
(chr22:30454200-30455200)
Mean nb of predicted sites per peak: 18.03

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6-8nt_m4

k-mer sig=72.08; evalue=8.3e-73

wawAwAwwTAwAwAwATAwATAwa

TWTATWTATWTWTWTAWWTWTWTW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4024 (53.80%)
Max nb of predicted sites per peak: 1125
(chr22:30454200-30455200)
Mean nb of predicted sites per peak: 14.97

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6-8nt_m5

k-mer sig=72.08; evalue=8.3e-73

wwTATATwTAwwTwTAwAwwTAtw

WATAWWTWTAWAWWTAWATATAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3567 (47.69%)
Max nb of predicted sites per peak: 1292
(chr22:30454200-30455200)
Mean nb of predicted sites per peak: 16.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6-8nt_m6

k-mer sig=38.20; evalue=6.3e-39

wwATATATwwwwwwATATAtATww

WWATATATATWWWWWWATATATWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 2901 (38.78%)
Max nb of predicted sites per peak: 1028
(chr22:30454200-30455200)
Mean nb of predicted sites per peak: 14.84

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6-8nt_m7

k-mer sig=72.08; evalue=8.3e-73

hwAawAAAAwwAaAAAwAAwAwww

WWWTWTTWTTTTTWWTTTTWTTWD

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4489 (60.01%)
Max nb of predicted sites per peak: 1115
(chr22:30454200-30455200)
Mean nb of predicted sites per peak: 16.67

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6-8nt_m8

k-mer sig=72.08; evalue=8.3e-73

wwwwTwTTwTwTTTTwwTTTTtww

WWAAAAAWWAAAAWAWAAWAWWWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4436 (59.30%)
Max nb of predicted sites per peak: 1214
(chr22:30454200-30455200)
Mean nb of predicted sites per peak: 16.49

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_6-8nt_m9

k-mer sig=72.08; evalue=8.3e-73

wwtTTTaTtwTATTAAAATTAaww

WWTTAATTTTAATAWAATAAAAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 3991 (53.36%)
Max nb of predicted sites per peak: 1354
(chr22:30454200-30455200)
Mean nb of predicted sites per peak: 17.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_6-8nt_m10

k-mer sig=72.08; evalue=8.3e-73

wwAwAWAAwTAAAwAwAwAAwwaw

WTWWTTWTWTWTTTAWTTWTWTWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4411 (58.97%)
Max nb of predicted sites per peak: 1232
(chr22:30454200-30455200)
Mean nb of predicted sites per peak: 16.70

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Predicted sites on test peaks (all motifs)

[tab]
[bed]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

Thomas-Chollier M, Herrmann C, Defrance M, Sand O, Thieffry D, van Helden J. (2012). RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets. Nucleic Acids Res 40(4): e31.
Thomas-Chollier M, Darbo E, Herrmann C, Defrance M, Thieffry D, van Helden J. (2012). A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs. Nat Protoc 7(8): 1551-1568.

RSAT - peak-motifs result

Analysis: flanks_v_centers_corrected_mar_22 (22/03/2026 22:42)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results