position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/03/24/peak-motifs.2026-03-24.173120_2026-03-24.173120_dVE4vB/data/sequences/peak-motifs_test_maxlen600_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title ewg -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/03/24/peak-motifs.2026-03-24.173120_2026-03-24.173120_dVE4vB/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/03/24/peak-motifs.2026-03-24.173120_2026-03-24.173120_dVE4vB/data/sequences/peak-motifs_test_maxlen600_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/03/24/peak-motifs.2026-03-24.173120_2026-03-24.173120_dVE4vB/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 1117 Sum of sequence lengths 335100 Min sequence length 0 Max sequence length 300 Average sequence length 300 Possible positions 335100 Oligonucleotide statistics: Total occurrences 312537 Position interval parameters: Position interval 20 Number of windows 16 Total positions 335100 Degrees of freedom 15 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -8 [-159,-140] -149.5 1117 11170 2 -7 [-139,-120] -129.5 1117 22340 3 -6 [-119,-100] -109.5 1117 22340 4 -5 [-99,-80] -89.5 1117 22340 5 -4 [-79,-60] -69.5 1117 22340 6 -3 [-59,-40] -49.5 1117 22340 7 -2 [-39,-20] -29.5 1117 22340 8 -1 [-19,0] -9.5 1117 22340 9 0 [1,20] 10.5 1117 22340 10 1 [21,40] 30.5 1117 22340 11 2 [41,60] 50.5 1117 22340 12 3 [61,80] 70.5 1117 22340 13 4 [81,100] 90.5 1117 22340 14 5 [101,120] 110.5 1117 22340 15 6 [121,140] 130.5 1117 22340 16 7 [141,160] 150.5 1117 11170 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -149.5 occurrences in window 1 [-159,-140] 11 -129.5 occurrences in window 2 [-139,-120] 12 -109.5 occurrences in window 3 [-119,-100] 13 -89.5 occurrences in window 4 [-99,-80] 14 -69.5 occurrences in window 5 [-79,-60] 15 -49.5 occurrences in window 6 [-59,-40] 16 -29.5 occurrences in window 7 [-39,-20] 17 -9.5 occurrences in window 8 [-19,0] 18 10.5 occurrences in window 9 [1,20] 19 30.5 occurrences in window 10 [21,40] 20 50.5 occurrences in window 11 [41,60] 21 70.5 occurrences in window 12 [61,80] 22 90.5 occurrences in window 13 [81,100] 23 110.5 occurrences in window 14 [101,120] 24 130.5 occurrences in window 15 [121,140] 25 150.5 occurrences in window 16 [141,160]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 90028 | 60.0 | 15 | 2.6e-07 | 1e-06 | 5.99 | 1 | 2760 | 5861 | 5775 | 5865 | 5956 | 6054 | 6134 | 6281 | 6112 | 6094 | 6153 | 6030 | 5997 | 6018 | 5913 | 3025 |
| c | c | 65952 | 35.5 | 15 | 2.1e-03 | 0.0084 | 2.08 | 2 | 2231 | 4412 | 4333 | 4385 | 4383 | 4228 | 4208 | 4402 | 4318 | 4338 | 4404 | 4502 | 4613 | 4467 | 4503 | 2225 |
| g | g | 66808 | 35.1 | 15 | 2.4e-03 | 0.0096 | 2.02 | 3 | 2290 | 4342 | 4557 | 4474 | 4341 | 4473 | 4407 | 4267 | 4497 | 4476 | 4281 | 4483 | 4478 | 4563 | 4556 | 2323 |
| a | a | 89749 | 22.9 | 15 | 8.7e-02 | 0.35 | 0.46 | 4 | 3019 | 5917 | 5878 | 5929 | 6058 | 6084 | 6172 | 5997 | 6033 | 6040 | 6102 | 5907 | 5836 | 5872 | 5965 | 2940 |
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