One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/03/29/compare-matrices_2026-03-29.153903_sHLRXa/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2026/03/29/compare-matrices_2026-03-29.153903_sHLRXa/compare-matrices.tab

One-to-n matrix alignment; reference matrix: assembly_2_shift4 ; 115 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
assembly_2_shift4 (assembly_2)														; assembly_2; m=0 (reference); ncol1=12; shift=4; ncol=16; ----rwAATTAAAcyy ; Alignment reference a 0 0 0 0 8 10 26 25 2 1 26 26 26 4 6 5 c 0 0 0 0 4 5 0 1 1 2 0 0 0 16 7 8 g 0 0 0 0 9 4 0 0 1 2 0 0 0 2 2 5 t 0 0 0 0 5 7 0 0 22 21 0 0 0 4 11 8
MA0151.1_shift7 (Arid3a)		0.966	0.483	7.361	0.940	0.979	2	88	5	2	2	19.800	1	; assembly_2 versus MA0151.1 (Arid3a); m=1/114; ncol2=6; w=0; offset=3; strand=D; shift=7; score= 19.8; -------ATyAAA--- ; cor=0.966; Ncor=0.483; logoDP=7.361; NsEucl=0.940; NSW=0.979; rcor=2; rNcor=88; rlogoDP=5; rNsEucl=2; rNSW=2; rank_mean=19.800; match_rank=1 a 0 0 0 0 0 0 0 27.0 0.0 1.0 27.0 27.0 20.0 0 0 0 c 0 0 0 0 0 0 0 0.0 0.0 9.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 0 0 0 t 0 0 0 0 0 0 0 0.0 27.0 17.0 0.0 0.0 6.0 0 0 0
MA1577.2_shift5 (TLX2)		0.967	0.483	7.093	0.939	0.977	1	87	7	4	4	20.600	2	; assembly_2 versus MA1577.2 (TLX2); m=2/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 20.6; -----yAATTA----- ; cor=0.967; Ncor=0.483; logoDP=7.093; NsEucl=0.939; NSW=0.977; rcor=1; rNcor=87; rlogoDP=7; rNsEucl=4; rNSW=4; rank_mean=20.600; match_rank=2 a 0 0 0 0 0 1435.0 7799.0 7799.0 0.0 0.0 7799.0 0 0 0 0 0 c 0 0 0 0 0 7799.0 0.0 0.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 0 1112.0 80.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 0 8156.0 0.0 0.0 7799.0 7799.0 0.0 0 0 0 0 0
MA0718.2_shift5 (RAX)		0.961	0.481	5.908	0.939	0.978	3	90	40	3	3	27.800	4	; assembly_2 versus MA0718.2 (RAX); m=3/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 27.8; -----yAATTA----- ; cor=0.961; Ncor=0.481; logoDP=5.908; NsEucl=0.939; NSW=0.978; rcor=3; rNcor=90; rlogoDP=40; rNsEucl=3; rNSW=3; rank_mean=27.800; match_rank=4 a 0 0 0 0 0 214.0 2412.0 2412.0 123.0 71.0 2412.0 0 0 0 0 0 c 0 0 0 0 0 1281.0 17.0 38.0 0.0 71.0 0.0 0 0 0 0 0 g 0 0 0 0 0 25.0 3.0 12.0 0.0 49.0 20.0 0 0 0 0 0 t 0 0 0 0 0 1131.0 40.0 24.0 2412.0 2412.0 126.0 0 0 0 0 0
MA1519.2_shift4 (LHX5)		0.926	0.540	6.723	0.923	0.958	33	42	11	30	34	30.000	5	; assembly_2 versus MA1519.2 (LHX5); m=4/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 30; ----sYAATTA----- ; cor=0.926; Ncor=0.540; logoDP=6.723; NsEucl=0.923; NSW=0.958; rcor=33; rNcor=42; rlogoDP=11; rNsEucl=30; rNSW=34; rank_mean=30.000; match_rank=5 a 0 0 0 0 394.0 0.0 7142.0 7142.0 0.0 0.0 7142.0 0 0 0 0 0 c 0 0 0 0 3420.0 2093.0 187.0 0.0 0.0 144.0 0.0 0 0 0 0 0 g 0 0 0 0 3721.0 0.0 0.0 0.0 0.0 28.0 160.0 0 0 0 0 0 t 0 0 0 0 1215.0 5049.0 0.0 0.0 7142.0 7142.0 0.0 0 0 0 0 0
MA1481.2_shift5 (DRGX)		0.954	0.477	5.640	0.935	0.975	5	93	56	7	7	33.600	7	; assembly_2 versus MA1481.2 (DRGX); m=5/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 33.6; -----yAATTA----- ; cor=0.954; Ncor=0.477; logoDP=5.640; NsEucl=0.935; NSW=0.975; rcor=5; rNcor=93; rlogoDP=56; rNsEucl=7; rNSW=7; rank_mean=33.600; match_rank=7 a 0 0 0 0 0 1079.0 14867.0 14867.0 0.0 0.0 14867.0 0 0 0 0 0 c 0 0 0 0 0 5997.0 501.0 0.0 0.0 813.0 17.0 0 0 0 0 0 g 0 0 0 0 0 1111.0 2037.0 0.0 0.0 209.0 962.0 0 0 0 0 0 t 0 0 0 0 0 8870.0 0.0 0.0 14867.0 14867.0 144.0 0 0 0 0 0
MA0889.2_shift4 (GBX1)		0.920	0.536	6.393	0.921	0.957	35	45	19	33	37	33.800	8	; assembly_2 versus MA0889.2 (GBX1); m=6/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 33.8; ----syAATTA----- ; cor=0.920; Ncor=0.536; logoDP=6.393; NsEucl=0.921; NSW=0.957; rcor=35; rNcor=45; rlogoDP=19; rNsEucl=33; rNSW=37; rank_mean=33.800; match_rank=8 a 0 0 0 0 1674.0 243.0 27339.0 27339.0 45.0 312.0 27339.0 0 0 0 0 0 c 0 0 0 0 14978.0 13543.0 589.0 172.0 128.0 438.0 50.0 0 0 0 0 0 g 0 0 0 0 6964.0 15.0 758.0 29.0 1.0 246.0 8.0 0 0 0 0 0 t 0 0 0 0 3723.0 13796.0 157.0 23.0 27339.0 27339.0 321.0 0 0 0 0 0
MA0027.3_shift5 (EN1)		0.952	0.476	5.834	0.933	0.973	8	96	44	14	12	34.800	10	; assembly_2 versus MA0027.3 (EN1); m=7/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 34.8; -----yAATTA----- ; cor=0.952; Ncor=0.476; logoDP=5.834; NsEucl=0.933; NSW=0.973; rcor=8; rNcor=96; rlogoDP=44; rNsEucl=14; rNSW=12; rank_mean=34.800; match_rank=10 a 0 0 0 0 0 104.0 2891.0 2891.0 0.0 57.0 2891.0 0 0 0 0 0 c 0 0 0 0 0 1328.0 99.0 28.0 0.0 483.0 0.0 0 0 0 0 0 g 0 0 0 0 0 5.0 71.0 0.0 0.0 162.0 30.0 0 0 0 0 0 t 0 0 0 0 0 1562.0 0.0 0.0 2891.0 2891.0 132.0 0 0 0 0 0
MA0720.2_shift5 (Shox2)		0.954	0.477	5.656	0.934	0.974	6	94	55	10	9	34.800	11	; assembly_2 versus MA0720.2 (Shox2); m=8/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 34.8; -----yAATTA----- ; cor=0.954; Ncor=0.477; logoDP=5.656; NsEucl=0.934; NSW=0.974; rcor=6; rNcor=94; rlogoDP=55; rNsEucl=10; rNSW=9; rank_mean=34.800; match_rank=11 a 0 0 0 0 0 979.0 18179.0 18179.0 29.0 597.0 18179.0 0 0 0 0 0 c 0 0 0 0 0 9027.0 626.0 138.0 12.0 545.0 193.0 0 0 0 0 0 g 0 0 0 0 0 228.0 426.0 3.0 0.0 870.0 36.0 0 0 0 0 0 t 0 0 0 0 0 9152.0 766.0 79.0 18179.0 18179.0 895.0 0 0 0 0 0
MA0075.4_shift4 (PRRX2)		0.908	0.530	6.754	0.914	0.948	40	49	9	42	45	37.000	13	; assembly_2 versus MA0075.4 (PRRX2); m=9/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 37; ----cyAATTA----- ; cor=0.908; Ncor=0.530; logoDP=6.754; NsEucl=0.914; NSW=0.948; rcor=40; rNcor=49; rlogoDP=9; rNsEucl=42; rNSW=45; rank_mean=37.000; match_rank=13 a 0 0 0 0 778.0 122.0 6720.0 6720.0 0.0 0.0 6720.0 0 0 0 0 0 c 0 0 0 0 6720.0 2008.0 29.0 0.0 0.0 0.0 1.0 0 0 0 0 0 g 0 0 0 0 1613.0 131.0 3.0 0.0 0.0 0.0 399.0 0 0 0 0 0 t 0 0 0 0 1933.0 4711.0 0.0 0.0 6720.0 6720.0 0.0 0 0 0 0 0
MA0890.2_shift5 (GBX2)		0.949	0.474	6.115	0.928	0.969	13	103	28	24	17	37.000	14	; assembly_2 versus MA0890.2 (GBX2); m=10/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 37; -----yAATTA----- ; cor=0.949; Ncor=0.474; logoDP=6.115; NsEucl=0.928; NSW=0.969; rcor=13; rNcor=103; rlogoDP=28; rNsEucl=24; rNSW=17; rank_mean=37.000; match_rank=14 a 0 0 0 0 0 699.0 27366.0 27366.0 0.0 318.0 27366.0 0 0 0 0 0 c 0 0 0 0 0 15511.0 570.0 250.0 61.0 570.0 73.0 0 0 0 0 0 g 0 0 0 0 0 106.0 1113.0 114.0 65.0 673.0 30.0 0 0 0 0 0 t 0 0 0 0 0 11855.0 227.0 25.0 27366.0 27366.0 650.0 0 0 0 0 0
MA0654.2_shift5 (ISX)		0.949	0.474	6.536	0.926	0.967	14	104	16	28	24	37.200	15	; assembly_2 versus MA0654.2 (ISX); m=11/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 37.2; -----yAATTA----- ; cor=0.949; Ncor=0.474; logoDP=6.536; NsEucl=0.926; NSW=0.967; rcor=14; rNcor=104; rlogoDP=16; rNsEucl=28; rNSW=24; rank_mean=37.200; match_rank=15 a 0 0 0 0 0 10.0 2065.0 2065.0 0.0 0.0 2065.0 0 0 0 0 0 c 0 0 0 0 0 1003.0 48.0 16.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 5.0 0.0 0.0 24.0 0.0 0 0 0 0 0 t 0 0 0 0 0 1061.0 24.0 10.0 2065.0 2065.0 49.0 0 0 0 0 0
MA0716.2_shift5 (PRRX1)		0.959	0.480	5.029	0.940	0.979	4	91	90	1	1	37.400	17	; assembly_2 versus MA0716.2 (PRRX1); m=12/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 37.4; -----yAATTA----- ; cor=0.959; Ncor=0.480; logoDP=5.029; NsEucl=0.940; NSW=0.979; rcor=4; rNcor=91; rlogoDP=90; rNsEucl=1; rNSW=1; rank_mean=37.400; match_rank=17 a 0 0 0 0 0 2373.0 23897.0 23897.0 0.0 1264.0 23897.0 0 0 0 0 0 c 0 0 0 0 0 11122.0 1088.0 503.0 3.0 2302.0 644.0 0 0 0 0 0 g 0 0 0 0 0 1121.0 1776.0 202.0 0.0 1004.0 136.0 0 0 0 0 0 t 0 0 0 0 0 12775.0 810.0 209.0 23897.0 23897.0 1229.0 0 0 0 0 0
MA0703.3_rc_shift4 (LMX1B_rc)		0.888	0.592	7.383	0.908	0.933	53	12	4	55	79	40.600	20	; assembly_2 versus MA0703.3_rc (LMX1B_rc); m=13/114; ncol2=8; w=0; offset=0; strand=R; shift=4; score= 40.6; ----tTAATTAA---- ; cor=0.888; Ncor=0.592; logoDP=7.383; NsEucl=0.908; NSW=0.933; rcor=53; rNcor=12; rlogoDP=4; rNsEucl=55; rNSW=79; rank_mean=40.600; match_rank=20 a 0 0 0 0 609.0 0.0 4064.0 4064.0 0.0 0.0 4064.0 3465.0 0 0 0 0 c 0 0 0 0 350.0 0.0 0.0 0.0 0.0 0.0 0.0 190.0 0 0 0 0 g 0 0 0 0 785.0 12.0 0.0 0.0 0.0 0.0 0.0 599.0 0 0 0 0 t 0 0 0 0 2319.0 4064.0 0.0 0.0 4064.0 4064.0 0.0 0.0 0 0 0 0
MA0644.3_shift4 (ESX1)		0.908	0.530	5.860	0.918	0.953	41	50	42	35	41	41.800	21	; assembly_2 versus MA0644.3 (ESX1); m=14/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 41.8; ----yyAATTA----- ; cor=0.908; Ncor=0.530; logoDP=5.860; NsEucl=0.918; NSW=0.953; rcor=41; rNcor=50; rlogoDP=42; rNsEucl=35; rNSW=41; rank_mean=41.800; match_rank=21 a 0 0 0 0 1070.0 589.0 19670.0 19670.0 0.0 47.0 19670.0 0 0 0 0 0 c 0 0 0 0 11980.0 7595.0 634.0 95.0 0.0 1009.0 0.0 0 0 0 0 0 g 0 0 0 0 2110.0 0.0 821.0 0.0 0.0 225.0 925.0 0 0 0 0 0 t 0 0 0 0 7690.0 12075.0 181.0 0.0 19670.0 19670.0 557.0 0 0 0 0 0
MA0666.3_shift5 (MSX1)		0.941	0.470	6.330	0.922	0.964	23	110	21	31	28	42.600	22	; assembly_2 versus MA0666.3 (MSX1); m=15/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 42.6; -----yAATTA----- ; cor=0.941; Ncor=0.470; logoDP=6.330; NsEucl=0.922; NSW=0.964; rcor=23; rNcor=110; rlogoDP=21; rNsEucl=31; rNSW=28; rank_mean=42.600; match_rank=22 a 0 0 0 0 0 227.0 5064.0 5064.0 0.0 0.0 5064.0 0 0 0 0 0 c 0 0 0 0 0 5064.0 125.0 42.0 0.0 280.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 146.0 0.0 0.0 0.0 159.0 0 0 0 0 0 t 0 0 0 0 0 2415.0 0.0 0.0 5064.0 5064.0 0.0 0 0 0 0 0
MA0894.2_rc_shift5 (HESX1_rc)		0.952	0.476	5.364	0.928	0.969	10	97	72	25	18	44.400	23	; assembly_2 versus MA0894.2_rc (HESX1_rc); m=16/114; ncol2=6; w=0; offset=1; strand=R; shift=5; score= 44.4; -----yAATTA----- ; cor=0.952; Ncor=0.476; logoDP=5.364; NsEucl=0.928; NSW=0.969; rcor=10; rNcor=97; rlogoDP=72; rNsEucl=25; rNSW=18; rank_mean=44.400; match_rank=23 a 0 0 0 0 0 97.0 4072.0 4072.0 0.0 31.0 4072.0 0 0 0 0 0 c 0 0 0 0 0 2180.0 0.0 15.0 9.0 53.0 34.0 0 0 0 0 0 g 0 0 0 0 0 38.0 15.0 0.0 7.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 0 1892.0 0.0 0.0 4072.0 4072.0 187.0 0 0 0 0 0
MA0709.2_shift5 (Msx3)		0.940	0.470	6.073	0.922	0.964	25	112	30	32	29	45.600	25	; assembly_2 versus MA0709.2 (Msx3); m=17/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 45.6; -----yAATTA----- ; cor=0.940; Ncor=0.470; logoDP=6.073; NsEucl=0.922; NSW=0.964; rcor=25; rNcor=112; rlogoDP=30; rNsEucl=32; rNSW=29; rank_mean=45.600; match_rank=25 a 0 0 0 0 0 312.0 8380.0 8380.0 0.0 121.0 8380.0 0 0 0 0 0 c 0 0 0 0 0 5798.0 160.0 89.0 0.0 215.0 59.0 0 0 0 0 0 g 0 0 0 0 0 29.0 237.0 38.0 0.0 105.0 88.0 0 0 0 0 0 t 0 0 0 0 0 2582.0 94.0 5.0 8380.0 8380.0 213.0 0 0 0 0 0
MA0708.3_shift5 (MSX2)		0.936	0.468	6.056	0.921	0.962	27	114	31	34	30	47.200	26	; assembly_2 versus MA0708.3 (MSX2); m=18/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 47.2; -----YAATTA----- ; cor=0.936; Ncor=0.468; logoDP=6.056; NsEucl=0.921; NSW=0.962; rcor=27; rNcor=114; rlogoDP=31; rNsEucl=34; rNSW=30; rank_mean=47.200; match_rank=26 a 0 0 0 0 0 220.0 6353.0 6353.0 0.0 62.0 6353.0 0 0 0 0 0 c 0 0 0 0 0 6353.0 175.0 112.0 0.0 600.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 259.0 0.0 0.0 0.0 243.0 0 0 0 0 0 t 0 0 0 0 0 2737.0 0.0 0.0 6353.0 6353.0 0.0 0 0 0 0 0
MA0612.3_shift5 (EMX1)		0.933	0.466	6.324	0.917	0.959	29	117	22	37	32	47.400	27	; assembly_2 versus MA0612.3 (EMX1); m=19/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 47.4; -----TAATTA----- ; cor=0.933; Ncor=0.466; logoDP=6.324; NsEucl=0.917; NSW=0.959; rcor=29; rNcor=117; rlogoDP=22; rNsEucl=37; rNSW=32; rank_mean=47.400; match_rank=27 a 0 0 0 0 0 19.0 9544.0 9544.0 0.0 0.0 9544.0 0 0 0 0 0 c 0 0 0 0 0 2263.0 1235.0 0.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 933.0 0.0 0 0 0 0 0 t 0 0 0 0 0 7281.0 0.0 0.0 9544.0 9544.0 0.0 0 0 0 0 0
MA0701.3_shift4 (LHX9)		0.888	0.518	6.245	0.907	0.939	52	56	23	59	55	49.000	28	; assembly_2 versus MA0701.3 (LHX9); m=20/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 49; ----CyAATTA----- ; cor=0.888; Ncor=0.518; logoDP=6.245; NsEucl=0.907; NSW=0.939; rcor=52; rNcor=56; rlogoDP=23; rNsEucl=59; rNSW=55; rank_mean=49.000; match_rank=28 a 0 0 0 0 390.0 0.0 6075.0 6075.0 0.0 0.0 6075.0 0 0 0 0 0 c 0 0 0 0 6075.0 2093.0 505.0 0.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 1056.0 0.0 0.0 0.0 0.0 170.0 305.0 0 0 0 0 0 t 0 0 0 0 1219.0 3983.0 20.0 0.0 6075.0 6075.0 0.0 0 0 0 0 0
MA0898.2_shift3 (Hmx3)		0.877	0.540	6.052	0.911	0.937	59	43	32	48	68	50.000	29	; assembly_2 versus MA0898.2 (Hmx3); m=21/114; ncol2=9; w=-1; offset=-1; strand=D; shift=3; score= 50; ---AgCAATTAA---- ; cor=0.877; Ncor=0.540; logoDP=6.052; NsEucl=0.911; NSW=0.937; rcor=59; rNcor=43; rlogoDP=32; rNsEucl=48; rNSW=68; rank_mean=50.000; match_rank=29 a 0 0 0 76.0 15.0 2.0 84.0 87.0 1.0 1.0 92.0 87.0 0 0 0 0 c 0 0 0 7.0 10.0 94.0 0.0 12.0 0.0 4.0 0.0 2.0 0 0 0 0 g 0 0 0 11.0 59.0 0.0 16.0 0.0 0.0 0.0 2.0 3.0 0 0 0 0 t 0 0 0 6.0 15.0 4.0 1.0 1.0 99.0 94.0 5.0 7.0 0 0 0 0
MA0886.2_shift5 (EMX2)		0.930	0.465	6.021	0.917	0.958	32	119	33	38	33	51.000	31	; assembly_2 versus MA0886.2 (EMX2); m=22/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 51; -----TAATTA----- ; cor=0.930; Ncor=0.465; logoDP=6.021; NsEucl=0.917; NSW=0.958; rcor=32; rNcor=119; rlogoDP=33; rNsEucl=38; rNSW=33; rank_mean=51.000; match_rank=31 a 0 0 0 0 0 834.0 37262.0 37262.0 0.0 0.0 37262.0 0 0 0 0 0 c 0 0 0 0 0 7761.0 4938.0 0.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 678.0 0.0 0.0 4025.0 0.0 0 0 0 0 0 t 0 0 0 0 0 29501.0 1236.0 0.0 37262.0 37262.0 0.0 0 0 0 0 0
MA0630.2_rc_shift5 (SHOX_rc)		0.953	0.476	3.637	0.937	0.976	7	95	154	5	5	53.200	32	; assembly_2 versus MA0630.2_rc (SHOX_rc); m=23/114; ncol2=6; w=0; offset=1; strand=R; shift=5; score= 53.2; -----yAATTA----- ; cor=0.953; Ncor=0.476; logoDP=3.637; NsEucl=0.937; NSW=0.976; rcor=7; rNcor=95; rlogoDP=154; rNsEucl=5; rNSW=5; rank_mean=53.200; match_rank=32 a 0 0 0 0 0 111.0 768.0 943.0 2.0 45.0 886.0 0 0 0 0 0 c 0 0 0 0 0 424.0 84.0 27.0 5.0 55.0 9.0 0 0 0 0 0 g 0 0 0 0 0 48.0 50.0 15.0 2.0 48.0 30.0 0 0 0 0 0 t 0 0 0 0 0 416.0 98.0 15.0 991.0 852.0 74.0 0 0 0 0 0
MA0721.2_shift5 (UNCX)		0.952	0.476	3.949	0.936	0.976	11	98	147	6	6	53.600	33	; assembly_2 versus MA0721.2 (UNCX); m=24/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 53.6; -----yAATTA----- ; cor=0.952; Ncor=0.476; logoDP=3.949; NsEucl=0.936; NSW=0.976; rcor=11; rNcor=98; rlogoDP=147; rNsEucl=6; rNSW=6; rank_mean=53.600; match_rank=33 a 0 0 0 0 0 3975.0 36926.0 36926.0 481.0 3111.0 36926.0 0 0 0 0 0 c 0 0 0 0 0 16800.0 2540.0 1302.0 806.0 3958.0 2211.0 0 0 0 0 0 g 0 0 0 0 0 2086.0 4582.0 420.0 117.0 1782.0 731.0 0 0 0 0 0 t 0 0 0 0 0 20126.0 2629.0 890.0 36926.0 36926.0 3885.0 0 0 0 0 0
MA0896.2_shift3 (Hmx1)		0.873	0.537	6.440	0.907	0.931	68	44	18	56	84	54.000	34	; assembly_2 versus MA0896.2 (Hmx1); m=25/114; ncol2=9; w=-1; offset=-1; strand=D; shift=3; score= 54; ---AGCAATTAA---- ; cor=0.873; Ncor=0.537; logoDP=6.440; NsEucl=0.907; NSW=0.931; rcor=68; rNcor=44; rlogoDP=18; rNsEucl=56; rNSW=84; rank_mean=54.000; match_rank=34 a 0 0 0 69.0 13.0 1.0 87.0 88.0 0.0 2.0 95.0 88.0 0 0 0 0 c 0 0 0 6.0 8.0 95.0 0.0 11.0 0.0 6.0 0.0 1.0 0 0 0 0 g 0 0 0 16.0 72.0 0.0 12.0 0.0 0.0 0.0 1.0 4.0 0 0 0 0 t 0 0 0 9.0 7.0 4.0 1.0 1.0 99.0 93.0 3.0 6.0 0 0 0 0
MA0662.2_shift5 (MIXL1)		0.949	0.474	4.051	0.935	0.974	12	102	143	9	8	54.800	35	; assembly_2 versus MA0662.2 (MIXL1); m=26/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 54.8; -----yAATTA----- ; cor=0.949; Ncor=0.474; logoDP=4.051; NsEucl=0.935; NSW=0.974; rcor=12; rNcor=102; rlogoDP=143; rNsEucl=9; rNSW=8; rank_mean=54.800; match_rank=35 a 0 0 0 0 0 2635.0 27042.0 27042.0 0.0 1385.0 27042.0 0 0 0 0 0 c 0 0 0 0 0 11639.0 1911.0 662.0 510.0 4270.0 1903.0 0 0 0 0 0 g 0 0 0 0 0 1245.0 3660.0 556.0 181.0 2031.0 115.0 0 0 0 0 0 t 0 0 0 0 0 15403.0 1038.0 736.0 27042.0 27042.0 2895.0 0 0 0 0 0
MA0882.2_shift5 (DLX6)		0.942	0.471	4.784	0.929	0.970	22	109	108	22	16	55.400	36	; assembly_2 versus MA0882.2 (DLX6); m=27/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 55.4; -----yAATTA----- ; cor=0.942; Ncor=0.471; logoDP=4.784; NsEucl=0.929; NSW=0.970; rcor=22; rNcor=109; rlogoDP=108; rNsEucl=22; rNSW=16; rank_mean=55.400; match_rank=36 a 0 0 0 0 0 137.0 2623.0 2623.0 12.0 48.0 2623.0 0 0 0 0 0 c 0 0 0 0 0 1410.0 273.0 124.0 0.0 140.0 30.0 0 0 0 0 0 g 0 0 0 0 0 21.0 143.0 0.0 0.0 68.0 16.0 0 0 0 0 0 t 0 0 0 0 0 1212.0 184.0 56.0 2623.0 2623.0 193.0 0 0 0 0 0
MA0634.2_shift5 (ALX3)		0.948	0.474	3.985	0.934	0.974	15	105	146	11	10	57.400	37	; assembly_2 versus MA0634.2 (ALX3); m=28/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 57.4; -----yAATTA----- ; cor=0.948; Ncor=0.474; logoDP=3.985; NsEucl=0.934; NSW=0.974; rcor=15; rNcor=105; rlogoDP=146; rNsEucl=11; rNSW=10; rank_mean=57.400; match_rank=37 a 0 0 0 0 0 794.0 7877.0 7877.0 76.0 697.0 7877.0 0 0 0 0 0 c 0 0 0 0 0 3367.0 506.0 317.0 72.0 729.0 449.0 0 0 0 0 0 g 0 0 0 0 0 345.0 885.0 141.0 8.0 239.0 87.0 0 0 0 0 0 t 0 0 0 0 0 4510.0 629.0 231.0 7877.0 7877.0 977.0 0 0 0 0 0
MA0717.2_shift5 (RAX2)		0.948	0.474	3.948	0.934	0.974	16	106	148	12	11	58.600	38	; assembly_2 versus MA0717.2 (RAX2); m=29/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 58.6; -----yAATTA----- ; cor=0.948; Ncor=0.474; logoDP=3.948; NsEucl=0.934; NSW=0.974; rcor=16; rNcor=106; rlogoDP=148; rNsEucl=12; rNSW=11; rank_mean=58.600; match_rank=38 a 0 0 0 0 0 3558.0 38860.0 38860.0 270.0 2167.0 38860.0 0 0 0 0 0 c 0 0 0 0 0 19645.0 3060.0 1523.0 738.0 4232.0 2644.0 0 0 0 0 0 g 0 0 0 0 0 1688.0 4490.0 757.0 125.0 2513.0 360.0 0 0 0 0 0 t 0 0 0 0 0 19215.0 2421.0 1030.0 38860.0 38860.0 4258.0 0 0 0 0 0
MA0699.2_shift5 (LBX2)		0.943	0.471	3.997	0.931	0.971	21	107	145	19	13	61.000	39	; assembly_2 versus MA0699.2 (LBX2); m=30/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 61; -----yAATTA----- ; cor=0.943; Ncor=0.471; logoDP=3.997; NsEucl=0.931; NSW=0.971; rcor=21; rNcor=107; rlogoDP=145; rNsEucl=19; rNSW=13; rank_mean=61.000; match_rank=39 a 0 0 0 0 0 157.0 2996.0 2996.0 0.0 150.0 2996.0 0 0 0 0 0 c 0 0 0 0 0 1634.0 338.0 290.0 29.0 258.0 34.0 0 0 0 0 0 g 0 0 0 0 0 109.0 325.0 130.0 118.0 293.0 106.0 0 0 0 0 0 t 0 0 0 0 0 1362.0 57.0 89.0 2996.0 2996.0 148.0 0 0 0 0 0
MA0132.3_shift5 (PDX1)		0.912	0.456	5.768	0.909	0.951	39	123	47	53	44	61.200	40	; assembly_2 versus MA0132.3 (PDX1); m=31/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 61.2; -----ymATTA----- ; cor=0.912; Ncor=0.456; logoDP=5.768; NsEucl=0.909; NSW=0.951; rcor=39; rNcor=123; rlogoDP=47; rNsEucl=53; rNSW=44; rank_mean=61.200; match_rank=40 a 0 0 0 0 0 292.0 4839.0 7130.0 0.0 0.0 7130.0 0 0 0 0 0 c 0 0 0 0 0 2469.0 2291.0 45.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 185.0 0.0 0.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 0 4661.0 78.0 0.0 7130.0 7130.0 0.0 0 0 0 0 0
MA0897.2_shift2 (Hmx2)		0.760	0.608	6.202	0.911	0.905	129	7	26	47	104	62.600	41	; assembly_2 versus MA0897.2 (Hmx2); m=32/114; ncol2=15; w=-2; offset=-2; strand=D; shift=2; score= 62.6; --aAgCAATTAAwgvr ; cor=0.760; Ncor=0.608; logoDP=6.202; NsEucl=0.911; NSW=0.905; rcor=129; rNcor=7; rlogoDP=26; rNsEucl=47; rNSW=104; rank_mean=62.600; match_rank=41 a 0 0 55.0 77.0 17.0 1.0 85.0 85.0 1.0 2.0 93.0 89.0 36.0 25.0 41.0 47.0 c 0 0 19.0 6.0 15.0 97.0 0.0 13.0 0.0 6.0 0.0 1.0 19.0 21.0 27.0 10.0 g 0 0 17.0 12.0 57.0 0.0 15.0 1.0 0.0 0.0 1.0 2.0 11.0 41.0 27.0 25.0 t 0 0 9.0 6.0 11.0 1.0 0.0 1.0 99.0 93.0 5.0 8.0 34.0 14.0 5.0 18.0
MA0125.2_rc_shift5 (Nobox_rc)		0.935	0.467	4.511	0.923	0.964	28	115	122	29	25	63.800	42	; assembly_2 versus MA0125.2_rc (Nobox_rc); m=33/114; ncol2=6; w=0; offset=1; strand=R; shift=5; score= 63.8; -----yAATTA----- ; cor=0.935; Ncor=0.467; logoDP=4.511; NsEucl=0.923; NSW=0.964; rcor=28; rNcor=115; rlogoDP=122; rNsEucl=29; rNSW=25; rank_mean=63.800; match_rank=42 a 0 0 0 0 0 1.0 32.0 34.0 0.0 2.0 37.0 0 0 0 0 0 c 0 0 0 0 0 22.0 4.0 2.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 0.0 1.0 0.0 0.0 1.0 0 0 0 0 0 t 0 0 0 0 0 15.0 2.0 1.0 38.0 36.0 0.0 0 0 0 0 0
MA0880.2_shift5 (Dlx3)		0.941	0.470	3.900	0.930	0.970	24	111	150	20	15	64.000	43	; assembly_2 versus MA0880.2 (Dlx3); m=34/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 64; -----yAATTA----- ; cor=0.941; Ncor=0.470; logoDP=3.900; NsEucl=0.930; NSW=0.970; rcor=24; rNcor=111; rlogoDP=150; rNsEucl=20; rNSW=15; rank_mean=64.000; match_rank=43 a 0 0 0 0 0 572.0 7323.0 7323.0 173.0 399.0 7323.0 0 0 0 0 0 c 0 0 0 0 0 4133.0 995.0 536.0 66.0 535.0 202.0 0 0 0 0 0 g 0 0 0 0 0 164.0 587.0 62.0 60.0 452.0 101.0 0 0 0 0 0 t 0 0 0 0 0 3190.0 643.0 299.0 7323.0 7323.0 691.0 0 0 0 0 0
MA0881.2_shift5 (Dlx4)		0.938	0.469	4.208	0.928	0.969	26	113	137	26	20	64.400	44	; assembly_2 versus MA0881.2 (Dlx4); m=35/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 64.4; -----yAATTA----- ; cor=0.938; Ncor=0.469; logoDP=4.208; NsEucl=0.928; NSW=0.969; rcor=26; rNcor=113; rlogoDP=137; rNsEucl=26; rNSW=20; rank_mean=64.400; match_rank=44 a 0 0 0 0 0 724.0 12054.0 12054.0 88.0 440.0 12054.0 0 0 0 0 0 c 0 0 0 0 0 6841.0 1500.0 744.0 85.0 868.0 316.0 0 0 0 0 0 g 0 0 0 0 0 145.0 739.0 55.0 38.0 542.0 134.0 0 0 0 0 0 t 0 0 0 0 0 5213.0 883.0 499.0 12054.0 12054.0 1127.0 0 0 0 0 0
MA0902.3_shift5 (HOXB2)		0.907	0.453	5.506	0.910	0.951	43	125	63	50	43	64.800	45	; assembly_2 versus MA0902.3 (HOXB2); m=36/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 64.8; -----ymATTA----- ; cor=0.907; Ncor=0.453; logoDP=5.506; NsEucl=0.910; NSW=0.951; rcor=43; rNcor=125; rlogoDP=63; rNsEucl=50; rNSW=43; rank_mean=64.800; match_rank=45 a 0 0 0 0 0 51.0 6827.0 6827.0 0.0 0.0 6827.0 0 0 0 0 0 c 0 0 0 0 0 2834.0 3276.0 0.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 199.0 0.0 0.0 1876.0 0.0 0 0 0 0 0 t 0 0 0 0 0 3993.0 0.0 0.0 6827.0 6827.0 0.0 0 0 0 0 0
MA1463.2_shift4 (ARGFX)		0.836	0.557	6.524	0.896	0.913	95	30	17	92	97	66.200	46	; assembly_2 versus MA1463.2 (ARGFX); m=37/114; ncol2=8; w=0; offset=0; strand=D; shift=4; score= 66.2; ----cTAATTAr---- ; cor=0.836; Ncor=0.557; logoDP=6.524; NsEucl=0.896; NSW=0.913; rcor=95; rNcor=30; rlogoDP=17; rNsEucl=92; rNSW=97; rank_mean=66.200; match_rank=46 a 0 0 0 0 2558.0 270.0 16589.0 16589.0 0.0 0.0 16589.0 10340.0 0 0 0 0 c 0 0 0 0 16589.0 1130.0 46.0 0.0 0.0 44.0 499.0 563.0 0 0 0 0 g 0 0 0 0 1748.0 96.0 0.0 0.0 0.0 0.0 1492.0 6249.0 0 0 0 0 t 0 0 0 0 4423.0 16589.0 4.0 0.0 16589.0 16589.0 1048.0 900.0 0 0 0 0
MA0854.2_shift4 (Alx1)		0.832	0.555	6.606	0.895	0.911	98	32	14	96	99	67.800	47	; assembly_2 versus MA0854.2 (Alx1); m=38/114; ncol2=8; w=0; offset=0; strand=D; shift=4; score= 67.8; ----yTAATTAr---- ; cor=0.832; Ncor=0.555; logoDP=6.606; NsEucl=0.895; NSW=0.911; rcor=98; rNcor=32; rlogoDP=14; rNsEucl=96; rNSW=99; rank_mean=67.800; match_rank=47 a 0 0 0 0 5.0 1.0 98.0 98.0 1.0 0.0 92.0 53.0 0 0 0 0 c 0 0 0 0 40.0 7.0 0.0 0.0 1.0 1.0 0.0 2.0 0 0 0 0 g 0 0 0 0 2.0 0.0 1.0 1.0 0.0 0.0 7.0 40.0 0 0 0 0 t 0 0 0 0 53.0 92.0 0.0 1.0 98.0 98.0 1.0 5.0 0 0 0 0
MA0642.3_shift4 (EN2)		0.876	0.511	4.652	0.910	0.943	61	61	118	51	49	68.000	48	; assembly_2 versus MA0642.3 (EN2); m=39/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 68; ----syAATTA----- ; cor=0.876; Ncor=0.511; logoDP=4.652; NsEucl=0.910; NSW=0.943; rcor=61; rNcor=61; rlogoDP=118; rNsEucl=51; rNSW=49; rank_mean=68.000; match_rank=48 a 0 0 0 0 115.0 0.0 898.0 898.0 0.0 28.0 898.0 0 0 0 0 0 c 0 0 0 0 898.0 577.0 198.0 0.0 0.0 0.0 4.0 0 0 0 0 0 g 0 0 0 0 474.0 0.0 44.0 31.0 0.0 0.0 168.0 0 0 0 0 0 t 0 0 0 0 313.0 321.0 103.0 0.0 898.0 898.0 0.0 0 0 0 0 0
MA1502.2_shift4 (HOXB8)		0.868	0.506	5.418	0.906	0.938	80	68	68	63	62	68.200	49	; assembly_2 versus MA1502.2 (HOXB8); m=40/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 68.2; ----gymATTA----- ; cor=0.868; Ncor=0.506; logoDP=5.418; NsEucl=0.906; NSW=0.938; rcor=80; rNcor=68; rlogoDP=68; rNsEucl=63; rNSW=62; rank_mean=68.200; match_rank=49 a 0 0 0 0 522.0 0.0 4474.0 4474.0 0.0 284.0 4474.0 0 0 0 0 0 c 0 0 0 0 536.0 2560.0 3374.0 0.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 2779.0 0.0 89.0 0.0 0.0 542.0 0.0 0 0 0 0 0 t 0 0 0 0 637.0 1914.0 0.0 0.0 4474.0 4474.0 0.0 0 0 0 0 0
MA0913.3_shift4 (HOXD9)		0.793	0.595	7.151	0.892	0.894	113	10	6	103	113	69.000	50	; assembly_2 versus MA0913.3 (HOXD9); m=41/114; ncol2=9; w=0; offset=0; strand=D; shift=4; score= 69; ----GymATAAAA--- ; cor=0.793; Ncor=0.595; logoDP=7.151; NsEucl=0.892; NSW=0.894; rcor=113; rNcor=10; rlogoDP=6; rNsEucl=103; rNSW=113; rank_mean=69.000; match_rank=50 a 0 0 0 0 1300.0 0.0 16363.0 16363.0 215.0 16363.0 16363.0 16363.0 16363.0 0 0 0 c 0 0 0 0 872.0 9773.0 8643.0 226.0 0.0 8.0 0.0 0.0 2202.0 0 0 0 g 0 0 0 0 16363.0 42.0 675.0 439.0 0.0 0.0 0.0 0.0 1216.0 0 0 0 t 0 0 0 0 655.0 6590.0 927.0 4.0 16363.0 5445.0 123.0 0.0 2194.0 0 0 0
MA0715.1_shift0 (PROP1)		0.924	0.404	5.081	0.929	0.964	34	184	85	23	27	70.600	51	; assembly_2 versus MA0715.1 (PROP1); m=42/114; ncol2=11; w=-4; offset=-4; strand=D; shift=0; score= 70.6; TAATywAATTA----- ; cor=0.924; Ncor=0.404; logoDP=5.081; NsEucl=0.929; NSW=0.964; rcor=34; rNcor=184; rlogoDP=85; rNsEucl=23; rNSW=27; rank_mean=70.600; match_rank=51 a 63.0 575.0 575.0 41.0 28.0 183.0 575.0 575.0 2.0 13.0 575.0 0 0 0 0 0 c 12.0 0.0 0.0 39.0 209.0 57.0 38.0 3.0 0.0 18.0 0.0 0 0 0 0 0 g 10.0 0.0 2.0 18.0 20.0 78.0 0.0 46.0 0.0 6.0 15.0 0 0 0 0 0 t 575.0 11.0 0.0 575.0 367.0 258.0 33.0 6.0 575.0 575.0 47.0 0 0 0 0 0
MA0879.3_shift5 (DLX1)		0.915	0.458	4.487	0.915	0.956	38	121	124	41	38	72.400		; assembly_2 versus MA0879.3 (DLX1); m=43/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 72.4; -----yAATTA----- ; cor=0.915; Ncor=0.458; logoDP=4.487; NsEucl=0.915; NSW=0.956; rcor=38; rNcor=121; rlogoDP=124; rNsEucl=41; rNSW=38; rank_mean=72.400; match_rank= a 0 0 0 0 0 265.0 6231.0 6231.0 0.0 0.0 6231.0 0 0 0 0 0 c 0 0 0 0 0 4059.0 1212.0 222.0 0.0 639.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 954.0 0.0 0.0 155.0 168.0 0 0 0 0 0 t 0 0 0 0 0 2171.0 540.0 0.0 6231.0 6231.0 614.0 0 0 0 0 0
MA0621.2_rc_shift5 (mix-a_rc)		0.903	0.527	3.905	0.907	0.939	46	51	149	60	56	72.400		; assembly_2 versus MA0621.2_rc (mix-a_rc); m=44/114; ncol2=7; w=0; offset=1; strand=R; shift=5; score= 72.4; -----TAATTAa---- ; cor=0.903; Ncor=0.527; logoDP=3.905; NsEucl=0.907; NSW=0.939; rcor=46; rNcor=51; rlogoDP=149; rNsEucl=60; rNSW=56; rank_mean=72.400; match_rank= a 0 0 0 0 0 21.0 1000.0 1000.0 0.0 0.0 1000.0 679.0 0 0 0 0 c 0 0 0 0 0 21.0 0.0 0.0 0.0 0.0 0.0 46.0 0 0 0 0 g 0 0 0 0 0 21.0 0.0 0.0 0.0 0.0 0.0 146.0 0 0 0 0 t 0 0 0 0 0 938.0 0.0 0.0 1000.0 1000.0 0.0 130.0 0 0 0 0
MA0704.2_shift5 (Lhx4)		0.918	0.459	4.284	0.916	0.958	36	120	133	39	35	72.600		; assembly_2 versus MA0704.2 (Lhx4); m=45/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 72.6; -----TAATTA----- ; cor=0.918; Ncor=0.459; logoDP=4.284; NsEucl=0.916; NSW=0.958; rcor=36; rNcor=120; rlogoDP=133; rNsEucl=39; rNSW=35; rank_mean=72.600; match_rank= a 0 0 0 0 0 217.0 2896.0 2896.0 0.0 0.0 2896.0 0 0 0 0 0 c 0 0 0 0 0 912.0 428.0 0.0 0.0 446.0 39.0 0 0 0 0 0 g 0 0 0 0 0 0.0 309.0 0.0 0.0 57.0 316.0 0 0 0 0 0 t 0 0 0 0 0 2896.0 255.0 155.0 2896.0 2896.0 135.0 0 0 0 0 0
MA0700.3_shift5 (LHX2)		0.899	0.450	5.913	0.898	0.937	48	130	39	84	63	72.800		; assembly_2 versus MA0700.3 (LHX2); m=46/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 72.8; -----CAATTA----- ; cor=0.899; Ncor=0.450; logoDP=5.913; NsEucl=0.898; NSW=0.937; rcor=48; rNcor=130; rlogoDP=39; rNsEucl=84; rNSW=63; rank_mean=72.800; match_rank= a 0 0 0 0 0 44.0 5790.0 6022.0 129.0 67.0 6275.0 0 0 0 0 0 c 0 0 0 0 0 5612.0 71.0 101.0 58.0 5.0 13.0 0 0 0 0 0 g 0 0 0 0 0 37.0 52.0 77.0 64.0 5.0 6.0 0 0 0 0 0 t 0 0 0 0 0 640.0 420.0 133.0 6082.0 6256.0 39.0 0 0 0 0 0
MA0910.3_shift4 (HOXD8)		0.860	0.502	5.410	0.903	0.934	86	73	69	69	74	74.200		; assembly_2 versus MA0910.3 (HOXD8); m=47/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 74.2; ----gymATTA----- ; cor=0.860; Ncor=0.502; logoDP=5.410; NsEucl=0.903; NSW=0.934; rcor=86; rNcor=73; rlogoDP=69; rNsEucl=69; rNSW=74; rank_mean=74.200; match_rank= a 0 0 0 0 537.0 0.0 3629.0 3629.0 0.0 178.0 3629.0 0 0 0 0 0 c 0 0 0 0 405.0 2150.0 3006.0 0.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 2287.0 0.0 47.0 0.0 0.0 507.0 0.0 0 0 0 0 0 t 0 0 0 0 399.0 1480.0 0.0 0.0 3629.0 3629.0 0.0 0 0 0 0 0
MA0661.2_shift4 (MEOX1)		0.869	0.507	4.887	0.905	0.937	78	66	100	65	65	74.800		; assembly_2 versus MA0661.2 (MEOX1); m=48/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 74.8; ----sTAATTA----- ; cor=0.869; Ncor=0.507; logoDP=4.887; NsEucl=0.905; NSW=0.937; rcor=78; rNcor=66; rlogoDP=100; rNsEucl=65; rNSW=65; rank_mean=74.800; match_rank= a 0 0 0 0 150.0 64.0 3000.0 3000.0 8.0 14.0 3000.0 0 0 0 0 0 c 0 0 0 0 1637.0 406.0 848.0 0.0 29.0 242.0 0.0 0 0 0 0 0 g 0 0 0 0 1363.0 53.0 151.0 2.0 0.0 328.0 338.0 0 0 0 0 0 t 0 0 0 0 115.0 3000.0 39.0 3.0 3000.0 3000.0 6.0 0 0 0 0 0
MA0725.2_shift4 (VSX1)		0.872	0.509	4.228	0.909	0.943	72	64	136	52	51	75.000		; assembly_2 versus MA0725.2 (VSX1); m=49/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 75; ----yTAATTA----- ; cor=0.872; Ncor=0.509; logoDP=4.228; NsEucl=0.909; NSW=0.943; rcor=72; rNcor=64; rlogoDP=136; rNsEucl=52; rNSW=51; rank_mean=75.000; match_rank= a 0 0 0 0 756.0 1836.0 13572.0 13572.0 172.0 898.0 13572.0 0 0 0 0 0 c 0 0 0 0 8453.0 3131.0 626.0 154.0 199.0 761.0 516.0 0 0 0 0 0 g 0 0 0 0 561.0 572.0 553.0 172.0 103.0 984.0 3337.0 0 0 0 0 0 t 0 0 0 0 5119.0 13572.0 554.0 90.0 13572.0 13572.0 1372.0 0 0 0 0 0
MA0710.2_shift4 (NOTO)		0.867	0.506	4.932	0.905	0.937	82	70	97	64	64	75.400		; assembly_2 versus MA0710.2 (NOTO); m=50/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 75.4; ----ytMATTA----- ; cor=0.867; Ncor=0.506; logoDP=4.932; NsEucl=0.905; NSW=0.937; rcor=82; rNcor=70; rlogoDP=97; rNsEucl=64; rNSW=64; rank_mean=75.400; match_rank= a 0 0 0 0 774.0 7097.0 15096.0 21405.0 0.0 374.0 21405.0 0 0 0 0 0 c 0 0 0 0 13986.0 4001.0 6310.0 0.0 0.0 62.0 0.0 0 0 0 0 0 g 0 0 0 0 617.0 573.0 0.0 0.0 0.0 422.0 2057.0 0 0 0 0 0 t 0 0 0 0 7419.0 21405.0 139.0 0.0 21405.0 21405.0 1904.0 0 0 0 0 0
MA0628.2_shift5 (POU6F1)		0.903	0.451	5.185	0.902	0.943	47	128	79	73	50	75.400		; assembly_2 versus MA0628.2 (POU6F1); m=51/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 75.4; -----TAATTA----- ; cor=0.903; Ncor=0.451; logoDP=5.185; NsEucl=0.902; NSW=0.943; rcor=47; rNcor=128; rlogoDP=79; rNsEucl=73; rNSW=50; rank_mean=75.400; match_rank= a 0 0 0 0 0 32.0 905.0 938.0 14.0 18.0 950.0 0 0 0 0 0 c 0 0 0 0 0 10.0 70.0 34.0 14.0 8.0 8.0 0 0 0 0 0 g 0 0 0 0 0 8.0 8.0 14.0 34.0 70.0 10.0 0 0 0 0 0 t 0 0 0 0 0 950.0 18.0 14.0 938.0 905.0 32.0 0 0 0 0 0
MA0874.2_shift2 (Arx)		0.839	0.479	6.541	0.897	0.916	93	92	15	88	93	76.200		; assembly_2 versus MA0874.2 (Arx); m=52/114; ncol2=10; w=-2; offset=-2; strand=D; shift=2; score= 76.2; --cryTAATTAr---- ; cor=0.839; Ncor=0.479; logoDP=6.541; NsEucl=0.897; NSW=0.916; rcor=93; rNcor=92; rlogoDP=15; rNsEucl=88; rNSW=93; rank_mean=76.200; match_rank= a 0 0 22.0 50.0 1.0 1.0 98.0 99.0 1.0 1.0 86.0 60.0 0 0 0 0 c 0 0 56.0 6.0 38.0 13.0 0.0 0.0 1.0 0.0 0.0 1.0 0 0 0 0 g 0 0 13.0 38.0 1.0 0.0 0.0 1.0 0.0 0.0 13.0 38.0 0 0 0 0 t 0 0 10.0 7.0 60.0 86.0 1.0 1.0 99.0 98.0 1.0 1.0 0 0 0 0
MA0041.3_shift1 (FOXD3)		0.771	0.565	5.393	0.907	0.905	124	25	70	58	106	76.600		; assembly_2 versus MA0041.3 (FOXD3); m=53/114; ncol2=14; w=-3; offset=-3; strand=D; shift=1; score= 76.6; -wawrhAAAYAAACa- ; cor=0.771; Ncor=0.565; logoDP=5.393; NsEucl=0.907; NSW=0.905; rcor=124; rNcor=25; rlogoDP=70; rNsEucl=58; rNSW=106; rank_mean=76.600; match_rank= a 0 86.0 120.0 91.0 56.0 99.0 171.0 171.0 171.0 0.0 171.0 171.0 171.0 13.0 125.0 0 c 0 22.0 17.0 45.0 17.0 109.0 37.0 8.0 1.0 43.0 4.0 11.0 17.0 171.0 20.0 0 g 0 13.0 52.0 45.0 115.0 8.0 1.0 0.0 7.0 0.0 2.0 8.0 20.0 13.0 30.0 0 t 0 85.0 22.0 81.0 10.0 171.0 2.0 7.0 2.0 128.0 7.0 11.0 35.0 30.0 47.0 0
MA0702.3_rc_shift5 (LMX1A_rc)		0.897	0.524	3.861	0.904	0.936	49	52	151	66	70	77.600		; assembly_2 versus MA0702.3_rc (LMX1A_rc); m=54/114; ncol2=7; w=0; offset=1; strand=R; shift=5; score= 77.6; -----TAATTAr---- ; cor=0.897; Ncor=0.524; logoDP=3.861; NsEucl=0.904; NSW=0.936; rcor=49; rNcor=52; rlogoDP=151; rNsEucl=66; rNSW=70; rank_mean=77.600; match_rank= a 0 0 0 0 0 0.0 7355.0 7355.0 0.0 0.0 7355.0 5133.0 0 0 0 0 c 0 0 0 0 0 501.0 0.0 0.0 0.0 0.0 19.0 305.0 0 0 0 0 g 0 0 0 0 0 102.0 0.0 50.0 9.0 0.0 31.0 2222.0 0 0 0 0 t 0 0 0 0 0 7355.0 0.0 0.0 7355.0 7355.0 0.0 90.0 0 0 0 0
MA0674.2_shift5 (NKX6-1)		0.873	0.509	4.758	0.903	0.934	69	63	111	71	76	78.000		; assembly_2 versus MA0674.2 (NKX6-1); m=55/114; ncol2=7; w=0; offset=1; strand=D; shift=5; score= 78; -----YmATTAa---- ; cor=0.873; Ncor=0.509; logoDP=4.758; NsEucl=0.903; NSW=0.934; rcor=69; rNcor=63; rlogoDP=111; rNsEucl=71; rNSW=76; rank_mean=78.000; match_rank= a 0 0 0 0 0 0.0 1407.0 2212.0 0.0 58.0 2212.0 1450.0 0 0 0 0 c 0 0 0 0 0 573.0 805.0 200.0 0.0 45.0 27.0 294.0 0 0 0 0 g 0 0 0 0 0 0.0 0.0 12.0 0.0 0.0 132.0 142.0 0 0 0 0 t 0 0 0 0 0 1640.0 195.0 40.0 2212.0 2212.0 17.0 327.0 0 0 0 0
MA0903.2_shift5 (HOXB3)		0.906	0.453	4.240	0.911	0.953	44	126	135	46	42	78.600		; assembly_2 versus MA0903.2 (HOXB3); m=56/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 78.6; -----ymATTA----- ; cor=0.906; Ncor=0.453; logoDP=4.240; NsEucl=0.911; NSW=0.953; rcor=44; rNcor=126; rlogoDP=135; rNsEucl=46; rNSW=42; rank_mean=78.600; match_rank= a 0 0 0 0 0 1744.0 7793.0 12899.0 0.0 441.0 12899.0 0 0 0 0 0 c 0 0 0 0 0 4979.0 5106.0 545.0 150.0 839.0 119.0 0 0 0 0 0 g 0 0 0 0 0 604.0 838.0 640.0 0.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 0 7920.0 697.0 242.0 12899.0 12899.0 574.0 0 0 0 0 0
MA0726.2_shift4 (VSX2)		0.867	0.506	4.852	0.904	0.935	81	69	105	67	72	78.800		; assembly_2 versus MA0726.2 (VSX2); m=57/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 78.8; ----yTAATTA----- ; cor=0.867; Ncor=0.506; logoDP=4.852; NsEucl=0.904; NSW=0.935; rcor=81; rNcor=69; rlogoDP=105; rNsEucl=67; rNSW=72; rank_mean=78.800; match_rank= a 0 0 0 0 427.0 1080.0 13809.0 13809.0 118.0 626.0 13809.0 0 0 0 0 0 c 0 0 0 0 9554.0 2725.0 397.0 124.0 186.0 567.0 321.0 0 0 0 0 0 g 0 0 0 0 445.0 363.0 343.0 123.0 92.0 447.0 2109.0 0 0 0 0 0 t 0 0 0 0 4255.0 13809.0 402.0 63.0 13809.0 13809.0 1014.0 0 0 0 0 0
MA0706.2_shift4 (MEOX2)		0.868	0.506	3.558	0.911	0.944	79	67	155	49	47	79.400		; assembly_2 versus MA0706.2 (MEOX2); m=58/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 79.4; ----sTaATtA----- ; cor=0.868; Ncor=0.506; logoDP=3.558; NsEucl=0.911; NSW=0.944; rcor=79; rNcor=67; rlogoDP=155; rNsEucl=49; rNSW=47; rank_mean=79.400; match_rank= a 0 0 0 0 3262.0 1469.0 23930.0 23930.0 76.0 1152.0 23930.0 0 0 0 0 0 c 0 0 0 0 8942.0 5055.0 8988.0 788.0 38.0 6039.0 359.0 0 0 0 0 0 g 0 0 0 0 14987.0 642.0 3016.0 272.0 169.0 4974.0 4099.0 0 0 0 0 0 t 0 0 0 0 2754.0 23930.0 900.0 492.0 23930.0 23930.0 1032.0 0 0 0 0 0
MA0899.2_shift4 (HOXA10)		0.802	0.601	4.867	0.899	0.908	108	8	102	82	103	80.600		; assembly_2 versus MA0899.2 (HOXA10); m=59/114; ncol2=9; w=0; offset=0; strand=D; shift=4; score= 80.6; ----gymATWAAa--- ; cor=0.802; Ncor=0.601; logoDP=4.867; NsEucl=0.899; NSW=0.908; rcor=108; rNcor=8; rlogoDP=102; rNsEucl=82; rNSW=103; rank_mean=80.600; match_rank= a 0 0 0 0 2425.0 153.0 8381.0 8381.0 367.0 5960.0 8381.0 8381.0 8381.0 0 0 0 c 0 0 0 0 1757.0 3867.0 4516.0 455.0 11.0 84.0 36.0 568.0 2082.0 0 0 0 g 0 0 0 0 8381.0 59.0 1022.0 718.0 0.0 121.0 76.0 125.0 1560.0 0 0 0 t 0 0 0 0 1341.0 4515.0 957.0 267.0 8381.0 2422.0 384.0 331.0 2058.0 0 0 0
MA2119.1_shift4 (HOXA3)		0.859	0.501	5.013	0.902	0.933	87	74	91	74	78	80.800		; assembly_2 versus MA2119.1 (HOXA3); m=60/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 80.8; ----sTMATTA----- ; cor=0.859; Ncor=0.501; logoDP=5.013; NsEucl=0.902; NSW=0.933; rcor=87; rNcor=74; rlogoDP=91; rNsEucl=74; rNSW=78; rank_mean=80.800; match_rank= a 0 0 0 0 93.0 0.0 2540.0 2540.0 0.0 0.0 2540.0 0 0 0 0 0 c 0 0 0 0 1246.0 502.0 1022.0 0.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 1294.0 0.0 10.0 0.0 0.0 517.0 361.0 0 0 0 0 0 t 0 0 0 0 138.0 2540.0 0.0 0.0 2540.0 2540.0 0.0 0 0 0 0 0
MA0900.3_rc_shift5 (HOXA2_rc)		0.892	0.446	5.729	0.895	0.934	50	135	52	95	75	81.400		; assembly_2 versus MA0900.3_rc (HOXA2_rc); m=61/114; ncol2=6; w=0; offset=1; strand=R; shift=5; score= 81.4; -----TAATKA----- ; cor=0.892; Ncor=0.446; logoDP=5.729; NsEucl=0.895; NSW=0.934; rcor=50; rNcor=135; rlogoDP=52; rNsEucl=95; rNSW=75; rank_mean=81.400; match_rank= a 0 0 0 0 0 0.0 56949.0 56949.0 0.0 0.0 56949.0 0 0 0 0 0 c 0 0 0 0 0 2052.0 0.0 0.0 0.0 290.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 17275.0 3636.0 0 0 0 0 0 t 0 0 0 0 0 56949.0 0.0 0.0 56949.0 39674.0 0.0 0 0 0 0 0
MA0892.2_shift5 (GSX1)		0.908	0.454	3.213	0.912	0.954	42	124	160	43	39	81.600		; assembly_2 versus MA0892.2 (GSX1); m=62/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 81.6; -----ymATTA----- ; cor=0.908; Ncor=0.454; logoDP=3.213; NsEucl=0.912; NSW=0.954; rcor=42; rNcor=124; rlogoDP=160; rNsEucl=43; rNSW=39; rank_mean=81.600; match_rank= a 0 0 0 0 0 124.0 781.0 1183.0 90.0 106.0 1183.0 0 0 0 0 0 c 0 0 0 0 0 450.0 402.0 106.0 79.0 106.0 0.0 0 0 0 0 0 g 0 0 0 0 0 48.0 60.0 123.0 3.0 0.0 9.0 0 0 0 0 0 t 0 0 0 0 0 733.0 177.0 50.0 1183.0 1183.0 103.0 0 0 0 0 0
MA0723.3_shift5 (VAX2)		0.906	0.453	3.756	0.912	0.954	45	127	153	45	40	82.000		; assembly_2 versus MA0723.3 (VAX2); m=63/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 82; -----yaATTA----- ; cor=0.906; Ncor=0.453; logoDP=3.756; NsEucl=0.912; NSW=0.954; rcor=45; rNcor=127; rlogoDP=153; rNsEucl=45; rNSW=40; rank_mean=82.000; match_rank= a 0 0 0 0 0 857.0 13498.0 13498.0 357.0 1361.0 13498.0 0 0 0 0 0 c 0 0 0 0 0 5691.0 5627.0 422.0 0.0 133.0 0.0 0 0 0 0 0 g 0 0 0 0 0 117.0 962.0 0.0 0.0 2988.0 0.0 0 0 0 0 0 t 0 0 0 0 0 7807.0 2652.0 1850.0 13498.0 13498.0 1082.0 0 0 0 0 0
MA1501.2_shift4 (HOXB7)		0.864	0.504	4.859	0.901	0.932	84	71	104	75	83	83.400		; assembly_2 versus MA1501.2 (HOXB7); m=64/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 83.4; ----GyAATTA----- ; cor=0.864; Ncor=0.504; logoDP=4.859; NsEucl=0.901; NSW=0.932; rcor=84; rNcor=71; rlogoDP=104; rNsEucl=75; rNSW=83; rank_mean=83.400; match_rank= a 0 0 0 0 0.0 0.0 828.0 828.0 0.0 79.0 828.0 0 0 0 0 0 c 0 0 0 0 0.0 359.0 222.0 29.0 0.0 3.0 0.0 0 0 0 0 0 g 0 0 0 0 828.0 51.0 0.0 0.0 31.0 0.0 151.0 0 0 0 0 0 t 0 0 0 0 87.0 828.0 0.0 0.0 828.0 828.0 0.0 0 0 0 0 0
MA0722.2_shift4 (VAX1)		0.861	0.502	3.413	0.908	0.941	85	72	157	54	53	84.200		; assembly_2 versus MA0722.2 (VAX1); m=65/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 84.2; ----yTAATtA----- ; cor=0.861; Ncor=0.502; logoDP=3.413; NsEucl=0.908; NSW=0.941; rcor=85; rNcor=72; rlogoDP=157; rNsEucl=54; rNSW=53; rank_mean=84.200; match_rank= a 0 0 0 0 447.0 679.0 5253.0 5253.0 297.0 508.0 5253.0 0 0 0 0 0 c 0 0 0 0 2775.0 995.0 863.0 153.0 86.0 321.0 87.0 0 0 0 0 0 g 0 0 0 0 455.0 101.0 189.0 46.0 213.0 1951.0 1332.0 0 0 0 0 0 t 0 0 0 0 2479.0 5253.0 302.0 133.0 5253.0 5253.0 398.0 0 0 0 0 0
MA0901.3_shift4 (HOXB13)		0.758	0.568	7.412	0.880	0.871	131	22	3	129	137	84.400		; assembly_2 versus MA0901.3 (HOXB13); m=66/114; ncol2=9; w=0; offset=0; strand=D; shift=4; score= 84.4; ----cCAATAAAA--- ; cor=0.758; Ncor=0.568; logoDP=7.412; NsEucl=0.880; NSW=0.871; rcor=131; rNcor=22; rlogoDP=3; rNsEucl=129; rNSW=137; rank_mean=84.400; match_rank= a 0 0 0 0 11896.0 4212.0 66409.0 73044.0 421.0 73612.0 75997.0 76077.0 70230.0 0 0 0 c 0 0 0 0 47674.0 65312.0 4611.0 726.0 550.0 523.0 599.0 760.0 2465.0 0 0 0 g 0 0 0 0 9096.0 582.0 351.0 1913.0 586.0 1083.0 490.0 625.0 1882.0 0 0 0 t 0 0 0 0 10048.0 8608.0 7343.0 3031.0 77157.0 3496.0 1628.0 1252.0 4137.0 0 0 0
MA0847.4_shift4 (FOXD2)		0.710	0.651	7.450	0.891	0.868	174	3	2	105	141	85.000		; assembly_2 versus MA0847.4 (FOXD2); m=67/114; ncol2=11; w=0; offset=0; strand=D; shift=4; score= 85; ----yTAAryAAACA- ; cor=0.710; Ncor=0.651; logoDP=7.450; NsEucl=0.891; NSW=0.868; rcor=174; rNcor=3; rlogoDP=2; rNsEucl=105; rNSW=141; rank_mean=85.000; match_rank= a 0 0 0 0 219.0 480.0 2484.0 2484.0 2484.0 84.0 2484.0 2484.0 2484.0 0.0 2484.0 0 c 0 0 0 0 906.0 19.0 16.0 285.0 23.0 1342.0 81.0 23.0 0.0 2484.0 24.0 0 g 0 0 0 0 131.0 0.0 137.0 292.0 1615.0 3.0 0.0 18.0 5.0 0.0 34.0 0 t 0 0 0 0 1578.0 2004.0 0.0 262.0 4.0 1141.0 79.0 1.0 2.0 768.0 232.0 0
MA0681.3_shift5 (PHOX2B)		0.719	0.608	6.682	0.890	0.866	156	6	12	107	144	85.000		; assembly_2 versus MA0681.3 (PHOX2B); m=68/114; ncol2=12; w=0; offset=1; strand=D; shift=5; score= 85; -----TAATCAAATTA ; cor=0.719; Ncor=0.608; logoDP=6.682; NsEucl=0.890; NSW=0.866; rcor=156; rNcor=6; rlogoDP=12; rNsEucl=107; rNSW=144; rank_mean=85.000; match_rank= a 0 0 0 0 0 10344.0 42696.0 51239.0 1742.0 2451.0 43074.0 48550.0 50675.0 921.0 4103.0 42869.0 c 0 0 0 0 0 2748.0 1935.0 496.0 615.0 36619.0 1895.0 1453.0 451.0 329.0 1923.0 1936.0 g 0 0 0 0 0 2542.0 2289.0 508.0 467.0 1873.0 588.0 1418.0 761.0 372.0 1232.0 2155.0 t 0 0 0 0 0 37602.0 6316.0 993.0 50412.0 12293.0 7679.0 1815.0 1349.0 51614.0 45978.0 6276.0
MA1497.2_shift4 (HOXA6)		0.856	0.499	3.121	0.907	0.940	89	78	161	57	54	87.800		; assembly_2 versus MA1497.2 (HOXA6); m=69/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 87.8; ----gymATTA----- ; cor=0.856; Ncor=0.499; logoDP=3.121; NsEucl=0.907; NSW=0.940; rcor=89; rNcor=78; rlogoDP=161; rNsEucl=57; rNSW=54; rank_mean=87.800; match_rank= a 0 0 0 0 1337.0 87.0 7201.0 7201.0 0.0 1911.0 7201.0 0 0 0 0 0 c 0 0 0 0 1725.0 2967.0 3768.0 745.0 0.0 233.0 94.0 0 0 0 0 0 g 0 0 0 0 7201.0 100.0 833.0 908.0 0.0 553.0 502.0 0 0 0 0 0 t 0 0 0 0 1605.0 4234.0 1482.0 11.0 7201.0 7201.0 663.0 0 0 0 0 0
MA0675.2_shift5 (NKX6-2)		0.891	0.446	3.836	0.906	0.947	51	136	152	62	46	89.400		; assembly_2 versus MA0675.2 (NKX6-2); m=70/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 89.4; -----ymATTA----- ; cor=0.891; Ncor=0.446; logoDP=3.836; NsEucl=0.906; NSW=0.947; rcor=51; rNcor=136; rlogoDP=152; rNsEucl=62; rNSW=46; rank_mean=89.400; match_rank= a 0 0 0 0 0 1172.0 11354.0 18935.0 584.0 2468.0 18935.0 0 0 0 0 0 c 0 0 0 0 0 7831.0 7581.0 310.0 0.0 2233.0 370.0 0 0 0 0 0 g 0 0 0 0 0 814.0 1053.0 191.0 0.0 551.0 775.0 0 0 0 0 0 t 0 0 0 0 0 11104.0 2582.0 546.0 18935.0 18935.0 678.0 0 0 0 0 0
MA0658.2_shift4 (LHX6)		0.785	0.523	5.754	0.885	0.894	115	54	49	117	114	89.800		; assembly_2 versus MA0658.2 (LHX6); m=71/114; ncol2=8; w=0; offset=0; strand=D; shift=4; score= 89.8; ----cTAATTAr---- ; cor=0.785; Ncor=0.523; logoDP=5.754; NsEucl=0.885; NSW=0.894; rcor=115; rNcor=54; rlogoDP=49; rNsEucl=117; rNSW=114; rank_mean=89.800; match_rank= a 0 0 0 0 529.0 0.0 4438.0 4438.0 0.0 0.0 4438.0 1668.0 0 0 0 0 c 0 0 0 0 3015.0 253.0 90.0 14.0 98.0 766.0 0.0 637.0 0 0 0 0 g 0 0 0 0 791.0 28.0 487.0 0.0 15.0 108.0 243.0 2769.0 0 0 0 0 t 0 0 0 0 1422.0 4438.0 0.0 0.0 4438.0 4438.0 2.0 194.0 0 0 0 0
MA0853.2_shift0 (Alx4)		0.842	0.421	6.623	0.897	0.916	92	165	13	87	92	89.800		; assembly_2 versus MA0853.2 (Alx4); m=72/114; ncol2=12; w=-4; offset=-4; strand=D; shift=0; score= 89.8; cgcryTAATTAr---- ; cor=0.842; Ncor=0.421; logoDP=6.623; NsEucl=0.897; NSW=0.916; rcor=92; rNcor=165; rlogoDP=13; rNsEucl=87; rNSW=92; rank_mean=89.800; match_rank= a 16.0 10.0 19.0 40.0 2.0 1.0 99.0 98.0 1.0 0.0 92.0 62.0 0 0 0 0 c 59.0 24.0 44.0 15.0 34.0 8.0 1.0 0.0 1.0 1.0 0.0 1.0 0 0 0 0 g 15.0 56.0 16.0 29.0 1.0 0.0 1.0 1.0 0.0 1.0 8.0 34.0 0 0 0 0 t 11.0 10.0 21.0 16.0 62.0 92.0 0.0 1.0 98.0 99.0 1.0 2.0 0 0 0 0
MA1500.2_rc_shift4 (HOXB6_rc)		0.857	0.500	2.155	0.906	0.939	88	77	166	61	58	90.000		; assembly_2 versus MA1500.2_rc (HOXB6_rc); m=73/114; ncol2=7; w=0; offset=0; strand=R; shift=4; score= 90; ----gymATTA----- ; cor=0.857; Ncor=0.500; logoDP=2.155; NsEucl=0.906; NSW=0.939; rcor=88; rNcor=77; rlogoDP=166; rNsEucl=61; rNSW=58; rank_mean=90.000; match_rank= a 0 0 0 0 1324.0 0.0 6192.0 6192.0 0.0 564.0 6192.0 0 0 0 0 0 c 0 0 0 0 996.0 3064.0 4139.0 727.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 4868.0 0.0 926.0 436.0 0.0 647.0 710.0 0 0 0 0 0 t 0 0 0 0 691.0 3128.0 403.0 0.0 6192.0 6192.0 0.0 0 0 0 0 0
MA0887.2_shift5 (EVX1)		0.887	0.443	4.066	0.903	0.943	54	139	140	70	48	90.200		; assembly_2 versus MA0887.2 (EVX1); m=74/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 90.2; -----taATTA----- ; cor=0.887; Ncor=0.443; logoDP=4.066; NsEucl=0.903; NSW=0.943; rcor=54; rNcor=139; rlogoDP=140; rNsEucl=70; rNSW=48; rank_mean=90.200; match_rank= a 0 0 0 0 0 1196.0 3899.0 7894.0 0.0 232.0 7894.0 0 0 0 0 0 c 0 0 0 0 0 2343.0 1752.0 29.0 67.0 463.0 14.0 0 0 0 0 0 g 0 0 0 0 0 269.0 1885.0 236.0 267.0 171.0 725.0 0 0 0 0 0 t 0 0 0 0 0 7894.0 358.0 0.0 7894.0 7894.0 172.0 0 0 0 0 0
MA0893.3_shift4 (GSX2)		0.851	0.496	4.109	0.903	0.935	90	81	139	68	73	90.200		; assembly_2 versus MA0893.3 (GSX2); m=75/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 90.2; ----symATTA----- ; cor=0.851; Ncor=0.496; logoDP=4.109; NsEucl=0.903; NSW=0.935; rcor=90; rNcor=81; rlogoDP=139; rNsEucl=68; rNSW=73; rank_mean=90.200; match_rank= a 0 0 0 0 816.0 503.0 2775.0 4998.0 0.0 0.0 4998.0 0 0 0 0 0 c 0 0 0 0 2277.0 2611.0 2223.0 0.0 121.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 2721.0 400.0 95.0 708.0 0.0 77.0 1005.0 0 0 0 0 0 t 0 0 0 0 0.0 4998.0 29.0 0.0 4998.0 4998.0 20.0 0 0 0 0 0
MA0068.2_shift4 (PAX4)		0.785	0.523	5.525	0.888	0.899	114	53	62	112	111	90.400		; assembly_2 versus MA0068.2 (PAX4); m=76/114; ncol2=8; w=0; offset=0; strand=D; shift=4; score= 90.4; ----ctAATTAg---- ; cor=0.785; Ncor=0.523; logoDP=5.525; NsEucl=0.888; NSW=0.899; rcor=114; rNcor=53; rlogoDP=62; rNsEucl=112; rNSW=111; rank_mean=90.400; match_rank= a 0 0 0 0 37.0 58.0 333.0 333.0 0.0 18.0 333.0 150.0 0 0 0 0 c 0 0 0 0 333.0 30.0 2.0 0.0 0.0 11.0 89.0 93.0 0 0 0 0 g 0 0 0 0 47.0 120.0 0.0 0.0 5.0 10.0 11.0 333.0 0 0 0 0 t 0 0 0 0 105.0 333.0 3.0 0.0 333.0 333.0 12.0 41.0 0 0 0 0
MA0904.3_rc_shift5 (HOXB5_rc)		0.880	0.440	4.881	0.897	0.937	58	145	101	89	67	92.000		; assembly_2 versus MA0904.3_rc (HOXB5_rc); m=77/114; ncol2=6; w=0; offset=1; strand=R; shift=5; score= 92; -----TMATKA----- ; cor=0.880; Ncor=0.440; logoDP=4.881; NsEucl=0.897; NSW=0.937; rcor=58; rNcor=145; rlogoDP=101; rNsEucl=89; rNSW=67; rank_mean=92.000; match_rank= a 0 0 0 0 0 0.0 3067.0 3067.0 0.0 0.0 3067.0 0 0 0 0 0 c 0 0 0 0 0 564.0 1061.0 0.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 26.0 0.0 0.0 1031.0 537.0 0 0 0 0 0 t 0 0 0 0 0 3067.0 6.0 0.0 3067.0 3067.0 0.0 0 0 0 0 0
MA0888.2_shift5 (EVX2)		0.883	0.442	4.117	0.901	0.941	55	141	138	76	52	92.400		; assembly_2 versus MA0888.2 (EVX2); m=78/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 92.4; -----TaATTA----- ; cor=0.883; Ncor=0.442; logoDP=4.117; NsEucl=0.901; NSW=0.941; rcor=55; rNcor=141; rlogoDP=138; rNsEucl=76; rNSW=52; rank_mean=92.400; match_rank= a 0 0 0 0 0 2541.0 10108.0 20419.0 5.0 303.0 20419.0 0 0 0 0 0 c 0 0 0 0 0 5669.0 5018.0 156.0 166.0 863.0 0.0 0 0 0 0 0 g 0 0 0 0 0 969.0 4541.0 881.0 702.0 445.0 1559.0 0 0 0 0 0 t 0 0 0 0 0 20419.0 752.0 0.0 20419.0 20419.0 446.0 0 0 0 0 0
MA2093.1_shift4 (HOXB1)		0.847	0.494	4.323	0.900	0.930	91	82	131	80	88	94.400		; assembly_2 versus MA2093.1 (HOXB1); m=79/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 94.4; ----sTAATTA----- ; cor=0.847; Ncor=0.494; logoDP=4.323; NsEucl=0.900; NSW=0.930; rcor=91; rNcor=82; rlogoDP=131; rNsEucl=80; rNSW=88; rank_mean=94.400; match_rank= a 0 0 0 0 71.0 0.0 2003.0 2003.0 0.0 0.0 2003.0 0 0 0 0 0 c 0 0 0 0 705.0 412.0 450.0 0.0 0.0 253.0 47.0 0 0 0 0 0 g 0 0 0 0 1298.0 0.0 307.0 0.0 1.0 262.0 633.0 0 0 0 0 0 t 0 0 0 0 0.0 2003.0 0.0 0.0 2003.0 2003.0 0.0 0 0 0 0 0
MA0707.3_shift5 (MNX1)		0.872	0.436	5.267	0.894	0.933	73	157	76	98	80	96.800		; assembly_2 versus MA0707.3 (MNX1); m=80/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 96.8; -----yrATTA----- ; cor=0.872; Ncor=0.436; logoDP=5.267; NsEucl=0.894; NSW=0.933; rcor=73; rNcor=157; rlogoDP=76; rNsEucl=98; rNSW=80; rank_mean=96.800; match_rank= a 0 0 0 0 0 0.0 19178.0 19178.0 0.0 0.0 19178.0 0 0 0 0 0 c 0 0 0 0 0 8120.0 3243.0 0.0 0.0 2158.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 16561.0 0.0 0.0 797.0 0.0 0 0 0 0 0 t 0 0 0 0 0 11058.0 0.0 0.0 19178.0 19178.0 0.0 0 0 0 0 0
MA0875.2_shift5 (BARX1)		0.873	0.436	5.104	0.894	0.932	70	156	83	100	82	98.200		; assembly_2 versus MA0875.2 (BARX1); m=81/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 98.2; -----cmATTA----- ; cor=0.873; Ncor=0.436; logoDP=5.104; NsEucl=0.894; NSW=0.932; rcor=70; rNcor=156; rlogoDP=83; rNsEucl=100; rNSW=82; rank_mean=98.200; match_rank= a 0 0 0 0 0 590.0 3339.0 6805.0 0.0 0.0 6805.0 0 0 0 0 0 c 0 0 0 0 0 5138.0 1992.0 207.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 0 246.0 1386.0 192.0 0.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 0 1667.0 87.0 0.0 6805.0 6805.0 0.0 0 0 0 0 0
MA0705.2_shift5 (Lhx8)		0.874	0.437	4.422	0.897	0.937	66	152	127	86	66	99.400		; assembly_2 versus MA0705.2 (Lhx8); m=82/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 99.4; -----YAATYR----- ; cor=0.874; Ncor=0.437; logoDP=4.422; NsEucl=0.897; NSW=0.937; rcor=66; rNcor=152; rlogoDP=127; rNsEucl=86; rNSW=66; rank_mean=99.400; match_rank= a 0 0 0 0 0 0.0 5092.0 5092.0 0.0 0.0 5092.0 0 0 0 0 0 c 0 0 0 0 0 1996.0 160.0 0.0 0.0 2083.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 1670.0 0.0 0.0 88.0 1929.0 0 0 0 0 0 t 0 0 0 0 0 5092.0 0.0 0.0 5092.0 5092.0 0.0 0 0 0 0 0
MA1495.2_shift5 (HOXA1)		0.874	0.437	4.386	0.897	0.936	63	150	129	90	69	100.200		; assembly_2 versus MA1495.2 (HOXA1); m=83/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 100.2; -----TAATtA----- ; cor=0.874; Ncor=0.437; logoDP=4.386; NsEucl=0.897; NSW=0.936; rcor=63; rNcor=150; rlogoDP=129; rNsEucl=90; rNSW=69; rank_mean=100.200; match_rank= a 0 0 0 0 0 0.0 7406.0 7406.0 0.0 0.0 7406.0 0 0 0 0 0 c 0 0 0 0 0 1546.0 2083.0 0.0 0.0 1310.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 1244.0 0.0 0.0 2265.0 1576.0 0 0 0 0 0 t 0 0 0 0 0 7406.0 0.0 0.0 7406.0 7406.0 0.0 0 0 0 0 0
MA1505.2_shift5 (HOXC8)		0.874	0.437	4.035	0.898	0.938	67	153	144	83	61	101.600		; assembly_2 versus MA1505.2 (HOXC8); m=84/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 101.6; -----yAATTR----- ; cor=0.874; Ncor=0.437; logoDP=4.035; NsEucl=0.898; NSW=0.938; rcor=67; rNcor=153; rlogoDP=144; rNsEucl=83; rNSW=61; rank_mean=101.600; match_rank= a 0 0 0 0 0 0.0 9273.0 9273.0 0.0 961.0 9273.0 0 0 0 0 0 c 0 0 0 0 0 4555.0 2727.0 20.0 0.0 99.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 19.0 0.0 211.0 2656.0 4325.0 0 0 0 0 0 t 0 0 0 0 0 9273.0 983.0 0.0 9273.0 9273.0 0.0 0 0 0 0 0
MA1498.3_shift5 (HOXA7)		0.874	0.437	3.387	0.899	0.939	64	151	158	81	57	102.200		; assembly_2 versus MA1498.3 (HOXA7); m=85/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 102.2; -----ymATTA----- ; cor=0.874; Ncor=0.437; logoDP=3.387; NsEucl=0.899; NSW=0.939; rcor=64; rNcor=151; rlogoDP=158; rNsEucl=81; rNSW=57; rank_mean=102.200; match_rank= a 0 0 0 0 0 1082.0 4447.0 8075.0 2.0 994.0 8075.0 0 0 0 0 0 c 0 0 0 0 0 4990.0 3628.0 199.0 0.0 439.0 478.0 0 0 0 0 0 g 0 0 0 0 0 310.0 525.0 622.0 0.0 0.0 252.0 0 0 0 0 0 t 0 0 0 0 0 3085.0 815.0 306.0 8075.0 8075.0 806.0 0 0 0 0 0
MA0158.2_shift4 (HOXA5)		0.751	0.500	5.553	0.880	0.884	137	76	61	130	123	105.400		; assembly_2 versus MA0158.2 (HOXA5); m=86/114; ncol2=8; w=0; offset=0; strand=D; shift=4; score= 105.4; ----symATTAs---- ; cor=0.751; Ncor=0.500; logoDP=5.553; NsEucl=0.880; NSW=0.884; rcor=137; rNcor=76; rlogoDP=61; rNsEucl=130; rNSW=123; rank_mean=105.400; match_rank= a 0 0 0 0 142.0 0.0 3130.0 3130.0 0.0 0.0 3130.0 480.0 0 0 0 0 c 0 0 0 0 832.0 1052.0 1632.0 0.0 0.0 0.0 0.0 1463.0 0 0 0 0 g 0 0 0 0 1759.0 0.0 81.0 0.0 0.0 885.0 0.0 1133.0 0 0 0 0 t 0 0 0 0 397.0 2078.0 0.0 0.0 3130.0 3130.0 0.0 54.0 0 0 0 0
MA0876.2_shift5 (BSX)		0.869	0.434	4.708	0.894	0.933	77	159	113	99	81	105.800		; assembly_2 versus MA0876.2 (BSX); m=87/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 105.8; -----ymATTA----- ; cor=0.869; Ncor=0.434; logoDP=4.708; NsEucl=0.894; NSW=0.933; rcor=77; rNcor=159; rlogoDP=113; rNsEucl=99; rNSW=81; rank_mean=105.800; match_rank= a 0 0 0 0 0 688.0 4036.0 8832.0 0.0 96.0 8832.0 0 0 0 0 0 c 0 0 0 0 0 5585.0 2483.0 194.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 0 103.0 2197.0 1078.0 0.0 0.0 0.0 0 0 0 0 0 t 0 0 0 0 0 3247.0 116.0 66.0 8832.0 8832.0 0.0 0 0 0 0 0
MA0912.2_rc_shift4 (HOXD3_rc)		0.751	0.501	5.764	0.873	0.871	136	75	48	141	136	107.200		; assembly_2 versus MA0912.2_rc (HOXD3_rc); m=88/114; ncol2=8; w=0; offset=0; strand=R; shift=4; score= 107.2; ----gTAATTAG---- ; cor=0.751; Ncor=0.501; logoDP=5.764; NsEucl=0.873; NSW=0.871; rcor=136; rNcor=75; rlogoDP=48; rNsEucl=141; rNSW=136; rank_mean=107.200; match_rank= a 0 0 0 0 1674.0 0.0 14562.0 14562.0 0.0 0.0 14562.0 2947.0 0 0 0 0 c 0 0 0 0 3187.0 2198.0 4453.0 0.0 0.0 0.0 0.0 827.0 0 0 0 0 g 0 0 0 0 8987.0 0.0 0.0 0.0 0.0 742.0 94.0 11615.0 0 0 0 0 t 0 0 0 0 714.0 14562.0 0.0 0.0 14562.0 14562.0 0.0 276.0 0 0 0 0
MA1476.3_shift4 (Dlx5)		0.741	0.494	5.829	0.870	0.864	142	83	45	147	145	112.400		; assembly_2 versus MA1476.3 (Dlx5); m=89/114; ncol2=8; w=0; offset=0; strand=D; shift=4; score= 112.4; ----GCAATTAg---- ; cor=0.741; Ncor=0.494; logoDP=5.829; NsEucl=0.870; NSW=0.864; rcor=142; rNcor=83; rlogoDP=45; rNsEucl=147; rNSW=145; rank_mean=112.400; match_rank= a 0 0 0 0 216.0 142.0 3906.0 3898.0 68.0 33.0 3836.0 554.0 0 0 0 0 c 0 0 0 0 183.0 3363.0 88.0 62.0 26.0 143.0 6.0 304.0 0 0 0 0 g 0 0 0 0 3490.0 78.0 19.0 59.0 23.0 52.0 37.0 2658.0 0 0 0 0 t 0 0 0 0 188.0 494.0 64.0 58.0 3960.0 3849.0 198.0 561.0 0 0 0 0
MA0465.3_shift4 (CDX2)		0.732	0.488	5.955	0.868	0.860	145	86	36	151	150	113.600		; assembly_2 versus MA0465.3 (CDX2); m=90/114; ncol2=8; w=0; offset=0; strand=D; shift=4; score= 113.6; ----GCAATAAA---- ; cor=0.732; Ncor=0.488; logoDP=5.955; NsEucl=0.868; NSW=0.860; rcor=145; rNcor=86; rlogoDP=36; rNsEucl=151; rNSW=150; rank_mean=113.600; match_rank= a 0 0 0 0 3157.0 1226.0 26720.0 29957.0 274.0 29221.0 30645.0 30125.0 0 0 0 0 c 0 0 0 0 2096.0 26587.0 3312.0 414.0 391.0 761.0 349.0 595.0 0 0 0 0 g 0 0 0 0 24214.0 607.0 184.0 1196.0 386.0 999.0 366.0 502.0 0 0 0 0 t 0 0 0 0 2559.0 3606.0 1810.0 459.0 30975.0 1045.0 666.0 804.0 0 0 0 0
MA0613.1_shift8 (FOXG1)		0.723	0.482	6.749	0.863	0.851	152	89	10	160	168	115.800		; assembly_2 versus MA0613.1 (FOXG1); m=91/114; ncol2=8; w=0; offset=4; strand=D; shift=8; score= 115.8; --------rTAAACAw ; cor=0.723; Ncor=0.482; logoDP=6.749; NsEucl=0.863; NSW=0.851; rcor=152; rNcor=89; rlogoDP=10; rNsEucl=160; rNSW=168; rank_mean=115.800; match_rank= a 0 0 0 0 0 0 0 0 374.0 1.0 997.0 997.0 997.0 1.0 997.0 498.0 c 0 0 0 0 0 0 0 0 1.0 1.0 1.0 1.0 1.0 997.0 1.0 167.0 g 0 0 0 0 0 0 0 0 623.0 1.0 1.0 1.0 1.0 1.0 1.0 2.0 t 0 0 0 0 0 0 0 0 1.0 997.0 1.0 1.0 1.0 1.0 1.0 333.0
MA0885.3_shift4 (Dlx2)		0.734	0.489	5.632	0.868	0.861	144	85	58	149	148	116.800		; assembly_2 versus MA0885.3 (Dlx2); m=92/114; ncol2=8; w=0; offset=0; strand=D; shift=4; score= 116.8; ----GCAATTAG---- ; cor=0.734; Ncor=0.489; logoDP=5.632; NsEucl=0.868; NSW=0.861; rcor=144; rNcor=85; rlogoDP=58; rNsEucl=149; rNSW=148; rank_mean=116.800; match_rank= a 0 0 0 0 402.0 288.0 7088.0 7045.0 156.0 70.0 6924.0 931.0 0 0 0 0 c 0 0 0 0 424.0 6082.0 164.0 135.0 45.0 316.0 22.0 537.0 0 0 0 0 g 0 0 0 0 6256.0 159.0 47.0 114.0 61.0 103.0 114.0 5246.0 0 0 0 0 t 0 0 0 0 355.0 908.0 138.0 143.0 7175.0 6948.0 377.0 723.0 0 0 0 0
MA0618.2_rc_shift4 (LBX1_rc)		0.815	0.475	2.353	0.886	0.910	104	100	165	115	101	117.000		; assembly_2 versus MA0618.2_rc (LBX1_rc); m=93/114; ncol2=7; w=0; offset=0; strand=R; shift=4; score= 117; ----CYARTTA----- ; cor=0.815; Ncor=0.475; logoDP=2.353; NsEucl=0.886; NSW=0.910; rcor=104; rNcor=100; rlogoDP=165; rNsEucl=115; rNSW=101; rank_mean=117.000; match_rank= a 0 0 0 0 57.0 0.0 738.0 738.0 0.0 0.0 951.0 0 0 0 0 0 c 0 0 0 0 799.0 268.0 119.0 0.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 114.0 0.0 0.0 262.0 0.0 0.0 49.0 0 0 0 0 0 t 0 0 0 0 29.0 731.0 143.0 0.0 999.0 999.0 0.0 0 0 0 0 0
MA0878.3_shift3 (CDX1)		0.708	0.490	6.891	0.869	0.846	175	84	8	148	176	118.200		; assembly_2 versus MA0878.3 (CDX1); m=94/114; ncol2=10; w=-1; offset=-1; strand=D; shift=3; score= 118.2; ---GGymATAAAA--- ; cor=0.708; Ncor=0.490; logoDP=6.891; NsEucl=0.869; NSW=0.846; rcor=175; rNcor=84; rlogoDP=8; rNsEucl=148; rNSW=176; rank_mean=118.200; match_rank= a 0 0 0 1088.0 527.0 11.0 4822.0 8617.0 0.0 8617.0 8617.0 8617.0 7199.0 0 0 0 c 0 0 0 884.0 355.0 4868.0 3795.0 0.0 0.0 56.0 72.0 0.0 1418.0 0 0 0 g 0 0 0 7528.0 8090.0 0.0 0.0 344.0 0.0 0.0 97.0 0.0 754.0 0 0 0 t 0 0 0 1076.0 131.0 3749.0 355.0 0.0 8617.0 230.0 29.0 0.0 854.0 0 0 0
MA1507.2_shift5 (HOXD4)		0.834	0.417	5.036	0.877	0.909	97	171	89	135	102	118.800		; assembly_2 versus MA1507.2 (HOXD4); m=95/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 118.8; -----YmATTA----- ; cor=0.834; Ncor=0.417; logoDP=5.036; NsEucl=0.877; NSW=0.909; rcor=97; rNcor=171; rlogoDP=89; rNsEucl=135; rNSW=102; rank_mean=118.800; match_rank= a 0 0 0 0 0 0.0 1542.0 3405.0 0.0 0.0 3405.0 0 0 0 0 0 c 0 0 0 0 0 1184.0 1862.0 0.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 0.0 176.0 0.0 0.0 194.0 0 0 0 0 0 t 0 0 0 0 0 3405.0 0.0 0.0 3405.0 3405.0 0.0 0 0 0 0 0
MA0601.2_rc_shift7 (Arid3b_rc)		0.800	0.466	4.052	0.875	0.891	109	116	142	139	117	124.600		; assembly_2 versus MA0601.2_rc (Arid3b_rc); m=96/114; ncol2=7; w=0; offset=3; strand=R; shift=7; score= 124.6; -------ATTAAtw-- ; cor=0.800; Ncor=0.466; logoDP=4.052; NsEucl=0.875; NSW=0.891; rcor=109; rNcor=116; rlogoDP=142; rNsEucl=139; rNSW=117; rank_mean=124.600; match_rank= a 0 0 0 0 0 0 0 911.0 89.0 0.0 1000.0 895.0 238.0 566.0 0 0 c 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 34.0 80.0 0 0 g 0 0 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 119.0 80.0 0 0 t 0 0 0 0 0 0 0 89.0 911.0 1000.0 0.0 104.0 609.0 273.0 0 0
MA0635.2_shift9 (BARHL2)		0.825	0.412	4.450	0.881	0.915	100	177	125	126	95	124.600		; assembly_2 versus MA0635.2 (BARHL2); m=97/114; ncol2=6; w=0; offset=5; strand=D; shift=9; score= 124.6; ---------TAAAyG- ; cor=0.825; Ncor=0.412; logoDP=4.450; NsEucl=0.881; NSW=0.915; rcor=100; rNcor=177; rlogoDP=125; rNsEucl=126; rNSW=95; rank_mean=124.600; match_rank= a 0 0 0 0 0 0 0 0 0 643.0 12855.0 12855.0 12855.0 443.0 1570.0 0 c 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 116.0 12855.0 0.0 0 g 0 0 0 0 0 0 0 0 0 0.0 0.0 0.0 1086.0 127.0 12855.0 0 t 0 0 0 0 0 0 0 0 0 12855.0 1969.0 0.0 4032.0 7756.0 1335.0 0
MA1499.2_shift5 (HOXB4)		0.814	0.407	5.325	0.868	0.895	106	182	74	150	112	124.800		; assembly_2 versus MA1499.2 (HOXB4); m=98/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 124.8; -----TmATTA----- ; cor=0.814; Ncor=0.407; logoDP=5.325; NsEucl=0.868; NSW=0.895; rcor=106; rNcor=182; rlogoDP=74; rNsEucl=150; rNSW=112; rank_mean=124.800; match_rank= a 0 0 0 0 0 0.0 3621.0 9080.0 0.0 0.0 9080.0 0 0 0 0 0 c 0 0 0 0 0 2103.0 5459.0 0.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 0.0 265.0 0.0 271.0 55.0 0 0 0 0 0 t 0 0 0 0 0 9080.0 0.0 0.0 9080.0 9080.0 0.0 0 0 0 0 0
MA1496.2_shift4 (HOXA4)		0.772	0.450	3.441	0.882	0.903	123	129	156	123	108	127.800		; assembly_2 versus MA1496.2 (HOXA4); m=99/114; ncol2=7; w=0; offset=0; strand=D; shift=4; score= 127.8; ----rYmATTA----- ; cor=0.772; Ncor=0.450; logoDP=3.441; NsEucl=0.882; NSW=0.903; rcor=123; rNcor=129; rlogoDP=156; rNsEucl=123; rNSW=108; rank_mean=127.800; match_rank= a 0 0 0 0 1089.0 0.0 893.0 2454.0 0.0 0.0 2454.0 0 0 0 0 0 c 0 0 0 0 397.0 967.0 1561.0 0.0 0.0 173.0 146.0 0 0 0 0 0 g 0 0 0 0 1365.0 0.0 176.0 684.0 39.0 171.0 260.0 0 0 0 0 0 t 0 0 0 0 94.0 2454.0 0.0 0.0 2454.0 2454.0 0.0 0 0 0 0 0
MA1504.2_shift5 (HOXC4)		0.819	0.409	4.784	0.873	0.903	101	179	109	143	109	128.200		; assembly_2 versus MA1504.2 (HOXC4); m=100/114; ncol2=6; w=0; offset=1; strand=D; shift=5; score= 128.2; -----YmATTA----- ; cor=0.819; Ncor=0.409; logoDP=4.784; NsEucl=0.873; NSW=0.903; rcor=101; rNcor=179; rlogoDP=109; rNsEucl=143; rNSW=109; rank_mean=128.200; match_rank= a 0 0 0 0 0 188.0 3607.0 8759.0 0.0 0.0 8759.0 0 0 0 0 0 c 0 0 0 0 0 3111.0 5152.0 0.0 0.0 0.0 0.0 0 0 0 0 0 g 0 0 0 0 0 0.0 0.0 583.0 0.0 0.0 825.0 0 0 0 0 0 t 0 0 0 0 0 8759.0 0.0 0.0 8759.0 8759.0 0.0 0 0 0 0 0
MA0517.2_rc_shift2 (STAT1::STAT2_rc)		0.702	0.552	0.307	0.888	0.863	183	37	181	110	146	131.400		; assembly_2 versus MA0517.2_rc (STAT1::STAT2_rc); m=101/114; ncol2=13; w=-2; offset=-2; strand=R; shift=2; score= 131.4; --rGRAAmyGAAACT- ; cor=0.702; Ncor=0.552; logoDP=0.307; NsEucl=0.888; NSW=0.863; rcor=183; rNcor=37; rlogoDP=181; rNsEucl=110; rNSW=146; rank_mean=131.400; match_rank= a 0 0 191.0 107.0 442.0 608.0 593.0 241.0 99.0 39.0 600.0 615.0 618.0 2.0 32.0 0 c 0 0 36.0 9.0 4.0 0.0 10.0 161.0 191.0 0.0 4.0 0.0 0.0 467.0 151.0 0 g 0 0 365.0 489.0 170.0 2.0 13.0 111.0 75.0 581.0 13.0 2.0 2.0 148.0 7.0 0 t 0 0 28.0 15.0 4.0 10.0 4.0 107.0 255.0 0.0 3.0 3.0 0.0 3.0 430.0 0
MA0650.4_shift4 (Hoxa13)		0.707	0.471	5.937	0.862	0.848	177	108	37	167	174	132.600		; assembly_2 versus MA0650.4 (Hoxa13); m=102/114; ncol2=8; w=0; offset=0; strand=D; shift=4; score= 132.6; ----CCAATAAA---- ; cor=0.707; Ncor=0.471; logoDP=5.937; NsEucl=0.862; NSW=0.848; rcor=177; rNcor=108; rlogoDP=37; rNsEucl=167; rNSW=174; rank_mean=132.600; match_rank= a 0 0 0 0 1442.0 1273.0 14069.0 15410.0 105.0 15804.0 16813.0 16550.0 0 0 0 0 c 0 0 0 0 12600.0 14100.0 1594.0 243.0 249.0 205.0 125.0 306.0 0 0 0 0 g 0 0 0 0 1889.0 77.0 146.0 666.0 232.0 407.0 98.0 145.0 0 0 0 0 t 0 0 0 0 1317.0 1798.0 1439.0 929.0 16662.0 832.0 212.0 247.0 0 0 0 0
MA1606.2_shift8 (Foxf1)		0.752	0.438	5.277	0.862	0.867	135	146	75	166	142	132.800		; assembly_2 versus MA1606.2 (Foxf1); m=103/114; ncol2=7; w=0; offset=4; strand=D; shift=8; score= 132.8; --------rTAAACA- ; cor=0.752; Ncor=0.438; logoDP=5.277; NsEucl=0.862; NSW=0.867; rcor=135; rNcor=146; rlogoDP=75; rNsEucl=166; rNSW=142; rank_mean=132.800; match_rank= a 0 0 0 0 0 0 0 0 18534.0 568.0 57293.0 53942.0 57167.0 437.0 56436.0 0 c 0 0 0 0 0 0 0 0 3754.0 446.0 899.0 2249.0 475.0 54394.0 745.0 0 g 0 0 0 0 0 0 0 0 33599.0 1158.0 445.0 811.0 1067.0 522.0 443.0 0 t 0 0 0 0 0 0 0 0 3653.0 57368.0 903.0 2538.0 831.0 4187.0 1916.0 0
MA0877.4_rc_shift9 (BARHL1_rc)		0.835	0.418	0.440	0.874	0.905	96	170	174	140	105	137.000		; assembly_2 versus MA0877.4_rc (BARHL1_rc); m=104/114; ncol2=6; w=0; offset=5; strand=R; shift=9; score= 137; ---------TAAACG- ; cor=0.835; Ncor=0.418; logoDP=0.440; NsEucl=0.874; NSW=0.905; rcor=96; rNcor=170; rlogoDP=174; rNsEucl=140; rNSW=105; rank_mean=137.000; match_rank= a 0 0 0 0 0 0 0 0 0 125.0 3960.0 3960.0 3960.0 46.0 26.0 0 c 0 0 0 0 0 0 0 0 0 26.0 0.0 0.0 33.0 3960.0 3.0 0 g 0 0 0 0 0 0 0 0 0 16.0 9.0 4.0 223.0 34.0 3960.0 0 t 0 0 0 0 0 0 0 0 0 3960.0 96.0 0.0 281.0 833.0 202.0 0
MA0040.2_rc_shift7 (Foxq1_rc)		0.718	0.497	1.211	0.875	0.860	159	80	168	138	149	138.800		; assembly_2 versus MA0040.2_rc (Foxq1_rc); m=105/114; ncol2=10; w=0; offset=3; strand=R; shift=7; score= 138.8; -------wATAAACAw ; cor=0.718; Ncor=0.497; logoDP=1.211; NsEucl=0.875; NSW=0.860; rcor=159; rNcor=80; rlogoDP=168; rNsEucl=138; rNSW=149; rank_mean=138.800; match_rank= a 0 0 0 0 0 0 0 9.0 13.0 0.0 18.0 18.0 18.0 0.0 15.0 11.0 c 0 0 0 0 0 0 0 3.0 4.0 1.0 0.0 0.0 0.0 18.0 0.0 0.0 g 0 0 0 0 0 0 0 0.0 1.0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 t 0 0 0 0 0 0 0 6.0 0.0 17.0 0.0 0.0 0.0 0.0 3.0 5.0
MA0033.2_shift8 (FOXL1)		0.731	0.426	5.450	0.858	0.859	146	162	67	169	151	139.000		; assembly_2 versus MA0033.2 (FOXL1); m=106/114; ncol2=7; w=0; offset=4; strand=D; shift=8; score= 139; --------rTAAACA- ; cor=0.731; Ncor=0.426; logoDP=5.450; NsEucl=0.858; NSW=0.859; rcor=146; rNcor=162; rlogoDP=67; rNsEucl=169; rNSW=151; rank_mean=139.000; match_rank= a 0 0 0 0 0 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 c 0 0 0 0 0 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 g 0 0 0 0 0 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 t 0 0 0 0 0 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0
MA0031.2_shift8 (FOXD1)		0.713	0.416	5.772	0.846	0.834	167	175	46	183	183	150.800		; assembly_2 versus MA0031.2 (FOXD1); m=107/114; ncol2=7; w=0; offset=4; strand=D; shift=8; score= 150.8; --------GTAAACA- ; cor=0.713; Ncor=0.416; logoDP=5.772; NsEucl=0.846; NSW=0.834; rcor=167; rNcor=175; rlogoDP=46; rNsEucl=183; rNSW=183; rank_mean=150.800; match_rank= a 0 0 0 0 0 0 0 0 1.0 0.0 19.0 20.0 18.0 1.0 20.0 0 c 0 0 0 0 0 0 0 0 1.0 0.0 1.0 0.0 1.0 18.0 0.0 0 g 0 0 0 0 0 0 0 0 17.0 0.0 0.0 0.0 1.0 0.0 0.0 0 t 0 0 0 0 0 0 0 0 1.0 20.0 0.0 0.0 0.0 1.0 0.0 0
MA0481.4_shift8 (FOXP1)		0.722	0.421	4.695	0.856	0.855	153	164	116	171	153	151.400		; assembly_2 versus MA0481.4 (FOXP1); m=108/114; ncol2=7; w=0; offset=4; strand=D; shift=8; score= 151.4; --------GTAAACA- ; cor=0.722; Ncor=0.421; logoDP=4.695; NsEucl=0.856; NSW=0.855; rcor=153; rNcor=164; rlogoDP=116; rNsEucl=171; rNSW=153; rank_mean=151.400; match_rank= a 0 0 0 0 0 0 0 0 10463.0 1209.0 69603.0 65236.0 70030.0 1336.0 68456.0 0 c 0 0 0 0 0 0 0 0 1573.0 727.0 2095.0 5067.0 1487.0 61094.0 1904.0 0 g 0 0 0 0 0 0 0 0 59571.0 920.0 1073.0 1830.0 1132.0 1493.0 749.0 0 t 0 0 0 0 0 0 0 0 3111.0 71862.0 1947.0 2585.0 2069.0 10795.0 3609.0 0
MA1103.3_shift8 (FOXK2)		0.722	0.421	4.748	0.855	0.854	154	166	112	173	160	153.000		; assembly_2 versus MA1103.3 (FOXK2); m=109/114; ncol2=7; w=0; offset=4; strand=D; shift=8; score= 153; --------GTAAACA- ; cor=0.722; Ncor=0.421; logoDP=4.748; NsEucl=0.855; NSW=0.854; rcor=154; rNcor=166; rlogoDP=112; rNsEucl=173; rNSW=160; rank_mean=153.000; match_rank= a 0 0 0 0 0 0 0 0 2697.0 360.0 15913.0 14387.0 15593.0 499.0 15709.0 0 c 0 0 0 0 0 0 0 0 551.0 210.0 277.0 1291.0 330.0 14282.0 295.0 0 g 0 0 0 0 0 0 0 0 12737.0 327.0 148.0 436.0 391.0 426.0 170.0 0 t 0 0 0 0 0 0 0 0 694.0 15782.0 341.0 565.0 365.0 1472.0 505.0 0
MA0852.3_shift8 (FOXK1)		0.714	0.416	5.356	0.850	0.842	166	174	73	179	178	154.000		; assembly_2 versus MA0852.3 (FOXK1); m=110/114; ncol2=7; w=0; offset=4; strand=D; shift=8; score= 154; --------GTAAACA- ; cor=0.714; Ncor=0.416; logoDP=5.356; NsEucl=0.850; NSW=0.842; rcor=166; rNcor=174; rlogoDP=73; rNsEucl=179; rNSW=178; rank_mean=154.000; match_rank= a 0 0 0 0 0 0 0 0 143.0 60.0 1003.0 999.0 1022.0 10.0 1015.0 0 c 0 0 0 0 0 0 0 0 28.0 5.0 37.0 37.0 13.0 958.0 16.0 0 g 0 0 0 0 0 0 0 0 868.0 44.0 10.0 11.0 10.0 12.0 12.0 0 t 0 0 0 0 0 0 0 0 17.0 947.0 6.0 9.0 11.0 76.0 13.0 0
MA0157.4_shift8 (Foxo3)		0.718	0.419	4.861	0.854	0.851	160	168	103	176	167	154.800		; assembly_2 versus MA0157.4 (Foxo3); m=111/114; ncol2=7; w=0; offset=4; strand=D; shift=8; score= 154.8; --------GTAAACA- ; cor=0.718; Ncor=0.419; logoDP=4.861; NsEucl=0.854; NSW=0.851; rcor=160; rNcor=168; rlogoDP=103; rNsEucl=176; rNSW=167; rank_mean=154.800; match_rank= a 0 0 0 0 0 0 0 0 3470.0 1546.0 22240.0 22288.0 22551.0 403.0 22141.0 0 c 0 0 0 0 0 0 0 0 590.0 435.0 968.0 803.0 483.0 21237.0 587.0 0 g 0 0 0 0 0 0 0 0 19202.0 1199.0 328.0 333.0 464.0 361.0 361.0 0 t 0 0 0 0 0 0 0 0 650.0 20732.0 376.0 488.0 414.0 1911.0 823.0 0
MA2117.1_shift8 (FOXP4)		0.719	0.419	4.500	0.856	0.854	157	167	123	172	157	155.200		; assembly_2 versus MA2117.1 (FOXP4); m=112/114; ncol2=7; w=0; offset=4; strand=D; shift=8; score= 155.2; --------GTAAACA- ; cor=0.719; Ncor=0.419; logoDP=4.500; NsEucl=0.856; NSW=0.854; rcor=157; rNcor=167; rlogoDP=123; rNsEucl=172; rNSW=157; rank_mean=155.200; match_rank= a 0 0 0 0 0 0 0 0 2224.0 543.0 19122.0 19613.0 20280.0 379.0 20230.0 0 c 0 0 0 0 0 0 0 0 834.0 793.0 1545.0 1330.0 419.0 18349.0 443.0 0 g 0 0 0 0 0 0 0 0 17315.0 539.0 534.0 368.0 550.0 493.0 218.0 0 t 0 0 0 0 0 0 0 0 1294.0 19792.0 466.0 356.0 418.0 2446.0 776.0 0
MA0042.2_shift8 (FOXI1)		0.700	0.409	5.749	0.843	0.829	185	180	50	184	184	156.600		; assembly_2 versus MA0042.2 (FOXI1); m=113/114; ncol2=7; w=0; offset=4; strand=D; shift=8; score= 156.6; --------GTAAACA- ; cor=0.700; Ncor=0.409; logoDP=5.749; NsEucl=0.843; NSW=0.829; rcor=185; rNcor=180; rlogoDP=50; rNsEucl=184; rNSW=184; rank_mean=156.600; match_rank= a 0 0 0 0 0 0 0 0 618.0 74.0 5175.0 5175.0 5175.0 157.0 5175.0 0 c 0 0 0 0 0 0 0 0 39.0 60.0 540.0 23.0 23.0 5175.0 12.0 0 g 0 0 0 0 0 0 0 0 5175.0 35.0 37.0 0.0 29.0 48.0 25.0 0 t 0 0 0 0 0 0 0 0 0.0 5175.0 0.0 0.0 66.0 810.0 0.0 0
MA1683.2_shift8 (FOXA3)		0.718	0.419	4.701	0.854	0.852	161	169	115	175	165	157.000		; assembly_2 versus MA1683.2 (FOXA3); m=114/114; ncol2=7; w=0; offset=4; strand=D; shift=8; score= 157; --------GTAAACA- ; cor=0.718; Ncor=0.419; logoDP=4.701; NsEucl=0.854; NSW=0.852; rcor=161; rNcor=169; rlogoDP=115; rNsEucl=175; rNSW=165; rank_mean=157.000; match_rank= a 0 0 0 0 0 0 0 0 4481.0 758.0 45178.0 43099.0 46046.0 951.0 45552.0 0 c 0 0 0 0 0 0 0 0 1464.0 903.0 1980.0 3883.0 973.0 39509.0 933.0 0 g 0 0 0 0 0 0 0 0 40396.0 690.0 636.0 977.0 934.0 1205.0 614.0 0 t 0 0 0 0 0 0 0 0 2596.0 46586.0 1143.0 978.0 984.0 7272.0 1838.0 0

One-to-n matrix alignment; reference matrix: assembly_5_shift2 ; 26 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
assembly_5_shift2 (assembly_5)														; assembly_5; m=0 (reference); ncol1=12; shift=2; ncol=14; --wrAGTCAAGAar ; Alignment reference a 0 0 7 7 17 2 1 1 16 16 1 17 10 6 c 0 0 1 3 0 0 0 14 1 1 1 0 0 2 g 0 0 2 6 0 15 1 0 0 0 14 0 4 5 t 0 0 7 1 0 0 15 2 0 0 1 0 3 4
MA0676.1_shift1 (Nr2e1)		0.930	0.572	5.991	0.933	0.964	30	20	35	15	26	25.200	3	; assembly_5 versus MA0676.1 (Nr2e1); m=1/25; ncol2=9; w=-1; offset=-1; strand=D; shift=1; score= 25.2; -aaAAGTCAA---- ; cor=0.930; Ncor=0.572; logoDP=5.991; NsEucl=0.933; NSW=0.964; rcor=30; rNcor=20; rlogoDP=35; rNsEucl=15; rNSW=26; rank_mean=25.200; match_rank=3 a 0 1118.0 1118.0 1118.0 1118.0 40.0 0.0 11.0 1118.0 1118.0 0 0 0 0 c 0 244.0 89.0 1.0 0.0 0.0 58.0 1118.0 0.0 131.0 0 0 0 0 g 0 191.0 448.0 101.0 74.0 1118.0 0.0 12.0 0.0 117.0 0 0 0 0 t 0 401.0 369.0 19.0 5.0 8.0 1118.0 112.0 0.0 247.0 0 0 0 0
MA1988.2_rc_shift2 (Atf3_rc)		0.880	0.514	4.394	0.902	0.933	57	58	128	72	77	78.400		; assembly_5 versus MA1988.2_rc (Atf3_rc); m=2/25; ncol2=7; w=0; offset=0; strand=R; shift=2; score= 78.4; --TGAGTCA----- ; cor=0.880; Ncor=0.514; logoDP=4.394; NsEucl=0.902; NSW=0.933; rcor=57; rNcor=58; rlogoDP=128; rNsEucl=72; rNSW=77; rank_mean=78.400; match_rank= a 0 0 887.0 2087.0 50485.0 2262.0 547.0 3914.0 53085.0 0 0 0 0 0 c 0 0 1086.0 574.0 1365.0 4498.0 471.0 48774.0 357.0 0 0 0 0 0 g 0 0 673.0 46610.0 504.0 45670.0 356.0 443.0 669.0 0 0 0 0 0 t 0 0 52046.0 5421.0 2338.0 2262.0 53318.0 1561.0 581.0 0 0 0 0 0
MA0835.3_rc_shift2 (BATF3_rc)		0.883	0.515	4.634	0.901	0.931	56	57	119	77	85	78.800		; assembly_5 versus MA0835.3_rc (BATF3_rc); m=3/25; ncol2=7; w=0; offset=0; strand=R; shift=2; score= 78.8; --TGAGTCA----- ; cor=0.883; Ncor=0.515; logoDP=4.634; NsEucl=0.901; NSW=0.931; rcor=56; rNcor=57; rlogoDP=119; rNsEucl=77; rNSW=85; rank_mean=78.800; match_rank= a 0 0 235.0 282.0 11502.0 408.0 116.0 1238.0 11737.0 0 0 0 0 0 c 0 0 117.0 88.0 117.0 560.0 87.0 10420.0 37.0 0 0 0 0 0 g 0 0 84.0 10347.0 79.0 10589.0 92.0 62.0 59.0 0 0 0 0 0 t 0 0 11529.0 1248.0 267.0 408.0 11670.0 245.0 132.0 0 0 0 0 0
MA0462.3_rc_shift2 (BATF::JUN_rc)		0.877	0.512	4.665	0.900	0.931	60	60	117	79	87	80.600		; assembly_5 versus MA0462.3_rc (BATF::JUN_rc); m=4/25; ncol2=7; w=0; offset=0; strand=R; shift=2; score= 80.6; --TGAGTCA----- ; cor=0.877; Ncor=0.512; logoDP=4.665; NsEucl=0.900; NSW=0.931; rcor=60; rNcor=60; rlogoDP=117; rNsEucl=79; rNSW=87; rank_mean=80.600; match_rank= a 0 0 558.0 907.0 36619.0 1399.0 320.0 3785.0 37330.0 0 0 0 0 0 c 0 0 424.0 522.0 539.0 4188.0 350.0 33135.0 182.0 0 0 0 0 0 g 0 0 318.0 32770.0 241.0 31168.0 204.0 400.0 275.0 0 0 0 0 0 t 0 0 36854.0 3955.0 755.0 1399.0 37280.0 834.0 367.0 0 0 0 0 0
MA1634.2_rc_shift2 (BATF_rc)		0.876	0.511	4.613	0.901	0.931	62	62	120	78	86	81.600		; assembly_5 versus MA1634.2_rc (BATF_rc); m=5/25; ncol2=7; w=0; offset=0; strand=R; shift=2; score= 81.6; --TGAGTCA----- ; cor=0.876; Ncor=0.511; logoDP=4.613; NsEucl=0.901; NSW=0.931; rcor=62; rNcor=62; rlogoDP=120; rNsEucl=78; rNSW=86; rank_mean=81.600; match_rank= a 0 0 754.0 1276.0 44736.0 2051.0 471.0 4682.0 45887.0 0 0 0 0 0 c 0 0 507.0 711.0 836.0 5573.0 341.0 40617.0 283.0 0 0 0 0 0 g 0 0 431.0 40279.0 306.0 37333.0 250.0 570.0 355.0 0 0 0 0 0 t 0 0 45316.0 4742.0 1130.0 2051.0 45946.0 1139.0 483.0 0 0 0 0 0
MA1928.2_shift2 (BNC2)		0.869	0.507	4.822	0.898	0.927	76	65	107	85	90	84.600		; assembly_5 versus MA1928.2 (BNC2); m=6/25; ncol2=7; w=0; offset=0; strand=D; shift=2; score= 84.6; --TGAGTCA----- ; cor=0.869; Ncor=0.507; logoDP=4.822; NsEucl=0.898; NSW=0.927; rcor=76; rNcor=65; rlogoDP=107; rNsEucl=85; rNSW=90; rank_mean=84.600; match_rank= a 0 0 147.0 134.0 5303.0 227.0 86.0 216.0 5483.0 0 0 0 0 0 c 0 0 66.0 72.0 117.0 838.0 106.0 5238.0 54.0 0 0 0 0 0 g 0 0 96.0 5184.0 61.0 4332.0 80.0 112.0 56.0 0 0 0 0 0 t 0 0 5363.0 282.0 191.0 275.0 5400.0 106.0 79.0 0 0 0 0 0
MA0846.2_shift2 (FOXC2)		0.704	0.645	5.495	0.893	0.874	182	4	65	101	134	97.200		; assembly_5 versus MA0846.2 (FOXC2); m=7/25; ncol2=11; w=0; offset=0; strand=D; shift=2; score= 97.2; --wAwrTAAAYAw- ; cor=0.704; Ncor=0.645; logoDP=5.495; NsEucl=0.893; NSW=0.874; rcor=182; rNcor=4; rlogoDP=65; rNsEucl=101; rNSW=134; rank_mean=97.200; match_rank= a 0 0 8939.0 20456.0 11301.0 6418.0 2005.0 20456.0 20456.0 20456.0 31.0 20456.0 13296.0 0 c 0 0 1279.0 1652.0 3476.0 440.0 3773.0 6759.0 344.0 105.0 14435.0 101.0 2087.0 0 g 0 0 454.0 5093.0 3129.0 14038.0 321.0 87.0 81.0 279.0 68.0 328.0 1710.0 0 t 0 0 11517.0 2080.0 9155.0 136.0 20456.0 122.0 107.0 242.0 6021.0 215.0 7160.0 0
MA0489.3_rc_shift1 (Jun_rc)		0.865	0.466	0.273	0.895	0.923	83	118	182	94	91	113.600		; assembly_5 versus MA0489.3_rc (Jun_rc); m=8/25; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score= 113.6; -aTGAGTCA----- ; cor=0.865; Ncor=0.466; logoDP=0.273; NsEucl=0.895; NSW=0.923; rcor=83; rNcor=118; rlogoDP=182; rNsEucl=94; rNSW=91; rank_mean=113.600; match_rank= a 0 61451.0 1633.0 969.0 89140.0 4185.0 1648.0 2739.0 91503.0 0 0 0 0 0 c 0 13040.0 1147.0 1228.0 1009.0 14953.0 1717.0 88928.0 718.0 0 0 0 0 0 g 0 14637.0 1827.0 88215.0 920.0 71105.0 1493.0 1468.0 716.0 0 0 0 0 0 t 0 4975.0 89496.0 3691.0 3034.0 3860.0 89245.0 968.0 1166.0 0 0 0 0 0
MA1141.2_shift1 (FOS::JUND)		0.725	0.446	5.622	0.864	0.852	151	134	59	159	166	133.800		; assembly_5 versus MA1141.2 (FOS::JUND); m=9/25; ncol2=9; w=-1; offset=-1; strand=D; shift=1; score= 133.8; -rTGAGTCAy---- ; cor=0.725; Ncor=0.446; logoDP=5.622; NsEucl=0.864; NSW=0.852; rcor=151; rNcor=134; rlogoDP=59; rNsEucl=159; rNSW=166; rank_mean=133.800; match_rank= a 0 593.0 0.0 0.0 894.0 75.0 0.0 29.0 999.0 21.0 0 0 0 0 c 0 104.0 1.0 0.0 91.0 40.0 0.0 970.0 0.0 290.0 0 0 0 0 g 0 266.0 0.0 871.0 0.0 867.0 0.0 0.0 0.0 77.0 0 0 0 0 t 0 38.0 999.0 129.0 15.0 19.0 999.0 0.0 0.0 612.0 0 0 0 0
MA0909.4_shift7 (Hoxd13)		0.749	0.437	5.834	0.855	0.853	138	155	43	174	161	134.200		; assembly_5 versus MA0909.4 (Hoxd13); m=10/25; ncol2=7; w=0; offset=5; strand=D; shift=7; score= 134.2; -------CAATAAA ; cor=0.749; Ncor=0.437; logoDP=5.834; NsEucl=0.855; NSW=0.853; rcor=138; rNcor=155; rlogoDP=43; rNsEucl=174; rNSW=161; rank_mean=134.200; match_rank= a 0 0 0 0 0 0 0 16.0 5775.0 5923.0 0.0 5955.0 5923.0 4227.0 c 0 0 0 0 0 0 0 5866.0 5.0 13.0 2.0 4.0 37.0 704.0 g 0 0 0 0 0 0 0 34.0 148.0 11.0 3.0 7.0 2.0 379.0 t 0 0 0 0 0 0 0 61.0 49.0 30.0 5972.0 11.0 15.0 667.0
MA0477.3_rc_shift1 (FOSL1_rc)		0.727	0.447	5.078	0.865	0.854	150	133	87	154	156	136.000		; assembly_5 versus MA0477.3_rc (FOSL1_rc); m=11/25; ncol2=9; w=-1; offset=-1; strand=R; shift=1; score= 136; -aTGAGTCAt---- ; cor=0.727; Ncor=0.447; logoDP=5.078; NsEucl=0.865; NSW=0.854; rcor=150; rNcor=133; rlogoDP=87; rNsEucl=154; rNSW=156; rank_mean=136.000; match_rank= a 0 38033.0 363.0 559.0 55860.0 2591.0 302.0 2246.0 56778.0 2795.0 0 0 0 0 c 0 6533.0 566.0 278.0 598.0 8615.0 286.0 54619.0 183.0 13127.0 0 0 0 0 g 0 10399.0 344.0 53711.0 163.0 43918.0 287.0 301.0 460.0 6703.0 0 0 0 0 t 0 2716.0 56408.0 3133.0 1060.0 2557.0 56806.0 515.0 260.0 35056.0 0 0 0 0
MA0476.2_rc_shift1 (FOS_rc)		0.814	0.438	0.236	0.876	0.892	105	147	183	137	116	137.600		; assembly_5 versus MA0476.2_rc (FOS_rc); m=12/25; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score= 137.6; -ATGAsTCA----- ; cor=0.814; Ncor=0.438; logoDP=0.236; NsEucl=0.876; NSW=0.892; rcor=105; rNcor=147; rlogoDP=183; rNsEucl=137; rNSW=116; rank_mean=137.600; match_rank= a 0 21777.0 0.0 0.0 29396.0 3113.0 0.0 2288.0 29396.0 0 0 0 0 0 c 0 1538.0 0.0 0.0 0.0 11206.0 0.0 27108.0 0.0 0 0 0 0 0 g 0 5823.0 0.0 29396.0 0.0 14079.0 0.0 0.0 0.0 0 0 0 0 0 t 0 258.0 29396.0 0.0 0.0 998.0 29396.0 0.0 0.0 0 0 0 0 0
MA1995.2_rc_shift5 (Npas4_rc)		0.784	0.457	0.233	0.870	0.881	116	122	184	146	126	138.800		; assembly_5 versus MA1995.2_rc (Npas4_rc); m=13/25; ncol2=7; w=0; offset=3; strand=R; shift=5; score= 138.8; -----GTCACGA-- ; cor=0.784; Ncor=0.457; logoDP=0.233; NsEucl=0.870; NSW=0.881; rcor=116; rNcor=122; rlogoDP=184; rNsEucl=146; rNSW=126; rank_mean=138.800; match_rank= a 0 0 0 0 0 617.0 511.0 118.0 8479.0 126.0 333.0 7226.0 0 0 c 0 0 0 0 0 647.0 367.0 8602.0 251.0 7969.0 580.0 702.0 0 0 g 0 0 0 0 0 7292.0 622.0 184.0 106.0 350.0 7713.0 492.0 0 0 t 0 0 0 0 0 404.0 7460.0 56.0 124.0 515.0 334.0 540.0 0 0
MA1128.2_rc_shift1 (FOSL1::JUN_rc)		0.719	0.442	4.576	0.865	0.855	158	140	121	152	152	144.600		; assembly_5 versus MA1128.2_rc (FOSL1::JUN_rc); m=14/25; ncol2=9; w=-1; offset=-1; strand=R; shift=1; score= 144.6; -aTGAGTCAy---- ; cor=0.719; Ncor=0.442; logoDP=4.576; NsEucl=0.865; NSW=0.855; rcor=158; rNcor=140; rlogoDP=121; rNsEucl=152; rNSW=152; rank_mean=144.600; match_rank= a 0 579.0 4.0 4.0 826.0 97.0 3.0 38.0 996.0 26.0 0 0 0 0 c 0 119.0 9.0 2.0 140.0 51.0 2.0 957.0 1.0 283.0 0 0 0 0 g 0 245.0 4.0 835.0 2.0 826.0 2.0 2.0 2.0 89.0 0 0 0 0 t 0 57.0 984.0 159.0 33.0 26.0 994.0 3.0 1.0 602.0 0 0 0 0
MA0491.3_rc_shift1 (JUND_rc)		0.716	0.441	5.006	0.863	0.850	163	143	92	163	171	146.400		; assembly_5 versus MA0491.3_rc (JUND_rc); m=15/25; ncol2=9; w=-1; offset=-1; strand=R; shift=1; score= 146.4; -ATGAGTCAt---- ; cor=0.716; Ncor=0.441; logoDP=5.006; NsEucl=0.863; NSW=0.850; rcor=163; rNcor=143; rlogoDP=92; rNsEucl=163; rNSW=171; rank_mean=146.400; match_rank= a 0 83216.0 809.0 1449.0 102249.0 4650.0 925.0 3920.0 104101.0 5020.0 0 0 0 0 c 0 7908.0 965.0 953.0 1147.0 20633.0 573.0 99787.0 443.0 20586.0 0 0 0 0 g 0 12025.0 751.0 98628.0 496.0 76028.0 650.0 873.0 757.0 10173.0 0 0 0 0 t 0 2796.0 103420.0 4915.0 2053.0 4634.0 103797.0 1365.0 644.0 70166.0 0 0 0 0
MA0490.3_rc_shift1 (JUNB_rc)		0.717	0.441	4.898	0.863	0.850	162	142	98	164	172	147.600		; assembly_5 versus MA0490.3_rc (JUNB_rc); m=16/25; ncol2=9; w=-1; offset=-1; strand=R; shift=1; score= 147.6; -ATGAGTCAT---- ; cor=0.717; Ncor=0.441; logoDP=4.898; NsEucl=0.863; NSW=0.850; rcor=162; rNcor=142; rlogoDP=98; rNsEucl=164; rNSW=172; rank_mean=147.600; match_rank= a 0 59750.0 693.0 797.0 76655.0 4798.0 682.0 3779.0 78342.0 3866.0 0 0 0 0 c 0 7508.0 900.0 617.0 913.0 10519.0 550.0 74757.0 322.0 11566.0 0 0 0 0 g 0 8876.0 588.0 73199.0 289.0 59784.0 523.0 550.0 654.0 7817.0 0 0 0 0 t 0 3722.0 77675.0 5243.0 1999.0 4755.0 78101.0 770.0 538.0 56607.0 0 0 0 0
MA0848.1_shift5 (FOXO4)		0.713	0.416	6.014	0.847	0.836	170	176	34	182	182	148.800		; assembly_5 versus MA0848.1 (FOXO4); m=17/25; ncol2=7; w=0; offset=3; strand=D; shift=5; score= 148.8; -----GTAAACA-- ; cor=0.713; Ncor=0.416; logoDP=6.014; NsEucl=0.847; NSW=0.836; rcor=170; rNcor=176; rlogoDP=34; rNsEucl=182; rNSW=182; rank_mean=148.800; match_rank= a 0 0 0 0 0 1669.0 345.0 5378.0 5378.0 5378.0 58.0 5378.0 0 0 c 0 0 0 0 0 13.0 69.0 1259.0 146.0 0.0 5378.0 10.0 0 0 g 0 0 0 0 0 5378.0 123.0 32.0 19.0 90.0 33.0 10.0 0 0 t 0 0 0 0 0 0.0 5378.0 20.0 20.0 10.0 958.0 40.0 0 0
MA1633.2_rc_shift1 (BACH1_rc)		0.716	0.440	5.058	0.857	0.836	164	144	88	170	181	149.400		; assembly_5 versus MA1633.2_rc (BACH1_rc); m=18/25; ncol2=9; w=-1; offset=-1; strand=R; shift=1; score= 149.4; -aTGAGTCAT---- ; cor=0.716; Ncor=0.440; logoDP=5.058; NsEucl=0.857; NSW=0.836; rcor=164; rNcor=144; rlogoDP=88; rNsEucl=170; rNSW=181; rank_mean=149.400; match_rank= a 0 32322.0 17.0 18.0 32322.0 517.0 14.0 811.0 32322.0 1048.0 0 0 0 0 c 0 2962.0 50.0 52.0 3303.0 0.0 24.0 32322.0 25.0 6187.0 0 0 0 0 g 0 8737.0 39.0 32322.0 31.0 32322.0 38.0 13.0 25.0 1482.0 0 0 0 0 t 0 4970.0 32322.0 2834.0 534.0 551.0 32322.0 0.0 7.0 32322.0 0 0 0 0
MA1130.2_shift1 (FOSL2::JUN)		0.706	0.435	4.985	0.863	0.850	178	158	93	162	170	152.200		; assembly_5 versus MA1130.2 (FOSL2::JUN); m=19/25; ncol2=9; w=-1; offset=-1; strand=D; shift=1; score= 152.2; -rTGAGTCAy---- ; cor=0.706; Ncor=0.435; logoDP=4.985; NsEucl=0.863; NSW=0.850; rcor=178; rNcor=158; rlogoDP=93; rNsEucl=162; rNSW=170; rank_mean=152.200; match_rank= a 0 542.0 1.0 1.0 847.0 103.0 1.0 20.0 998.0 19.0 0 0 0 0 c 0 121.0 1.0 1.0 123.0 141.0 1.0 979.0 0.0 299.0 0 0 0 0 g 0 282.0 1.0 840.0 1.0 698.0 1.0 1.0 1.0 93.0 0 0 0 0 t 0 55.0 998.0 158.0 29.0 58.0 998.0 1.0 1.0 589.0 0 0 0 0
MA1137.2_rc_shift1 (FOSL1::JUNB_rc)		0.710	0.437	3.259	0.873	0.870	173	154	159	144	138	153.600		; assembly_5 versus MA1137.2_rc (FOSL1::JUNB_rc); m=20/25; ncol2=9; w=-1; offset=-1; strand=R; shift=1; score= 153.6; -aTKAgTCAy---- ; cor=0.710; Ncor=0.437; logoDP=3.259; NsEucl=0.873; NSW=0.870; rcor=173; rNcor=154; rlogoDP=159; rNsEucl=144; rNSW=138; rank_mean=153.600; match_rank= a 0 552.0 37.0 37.0 803.0 113.0 42.0 63.0 945.0 47.0 0 0 0 0 c 0 170.0 38.0 9.0 115.0 198.0 21.0 880.0 16.0 287.0 0 0 0 0 g 0 225.0 21.0 683.0 23.0 626.0 20.0 21.0 16.0 100.0 0 0 0 0 t 0 53.0 904.0 271.0 59.0 63.0 917.0 36.0 23.0 566.0 0 0 0 0
MA0484.3_shift1 (HNF4G)		0.711	0.438	4.317	0.864	0.853	171	148	132	156	162	153.800		; assembly_5 versus MA0484.3 (HNF4G); m=21/25; ncol2=9; w=-1; offset=-1; strand=D; shift=1; score= 153.8; -CAAAGTCCA---- ; cor=0.711; Ncor=0.438; logoDP=4.317; NsEucl=0.864; NSW=0.853; rcor=171; rNcor=148; rlogoDP=132; rNsEucl=156; rNSW=162; rank_mean=153.800; match_rank= a 0 434.0 17011.0 15704.0 16963.0 208.0 277.0 1118.0 564.0 14053.0 0 0 0 0 c 0 16488.0 449.0 507.0 172.0 329.0 227.0 14917.0 16495.0 1190.0 0 0 0 0 g 0 419.0 456.0 1576.0 769.0 17215.0 841.0 697.0 226.0 1299.0 0 0 0 0 t 0 881.0 306.0 435.0 318.0 470.0 16877.0 1490.0 937.0 1680.0 0 0 0 0
MA1135.2_rc_shift1 (FOSB::JUNB_rc)		0.700	0.431	5.176	0.861	0.845	184	161	80	168	177	154.000		; assembly_5 versus MA1135.2_rc (FOSB::JUNB_rc); m=22/25; ncol2=9; w=-1; offset=-1; strand=R; shift=1; score= 154; -rTGAsTCAy---- ; cor=0.700; Ncor=0.431; logoDP=5.176; NsEucl=0.861; NSW=0.845; rcor=184; rNcor=161; rlogoDP=80; rNsEucl=168; rNSW=177; rank_mean=154.000; match_rank= a 0 578.0 1.0 1.0 958.0 61.0 1.0 19.0 998.0 20.0 0 0 0 0 c 0 126.0 1.0 1.0 39.0 309.0 1.0 980.0 1.0 321.0 0 0 0 0 g 0 259.0 0.0 808.0 1.0 596.0 1.0 0.0 0.0 61.0 0 0 0 0 t 0 37.0 998.0 191.0 2.0 34.0 997.0 1.0 1.0 598.0 0 0 0 0
MA0099.4_shift1 (FOS::JUN)		0.704	0.433	4.706	0.864	0.852	179	160	114	158	164	155.000		; assembly_5 versus MA0099.4 (FOS::JUN); m=23/25; ncol2=9; w=-1; offset=-1; strand=D; shift=1; score= 155; -rTGAGTCAy---- ; cor=0.704; Ncor=0.433; logoDP=4.706; NsEucl=0.864; NSW=0.852; rcor=179; rNcor=160; rlogoDP=114; rNsEucl=158; rNSW=164; rank_mean=155.000; match_rank= a 0 592.0 3.0 7.0 820.0 78.0 5.0 30.0 992.0 24.0 0 0 0 0 c 0 111.0 5.0 1.0 131.0 180.0 2.0 963.0 2.0 313.0 0 0 0 0 g 0 257.0 2.0 824.0 4.0 688.0 2.0 3.0 2.0 95.0 0 0 0 0 t 0 40.0 990.0 168.0 45.0 54.0 991.0 4.0 4.0 568.0 0 0 0 0
MA0114.5_shift1 (HNF4A)		0.711	0.437	4.277	0.864	0.853	172	149	134	157	163	155.000		; assembly_5 versus MA0114.5 (HNF4A); m=24/25; ncol2=9; w=-1; offset=-1; strand=D; shift=1; score= 155; -CAAAGTCCA---- ; cor=0.711; Ncor=0.437; logoDP=4.277; NsEucl=0.864; NSW=0.853; rcor=172; rNcor=149; rlogoDP=134; rNsEucl=157; rNSW=163; rank_mean=155.000; match_rank= a 0 1468.0 43321.0 40217.0 43264.0 716.0 927.0 2770.0 1363.0 36654.0 0 0 0 0 c 0 41443.0 1257.0 1370.0 544.0 916.0 695.0 37804.0 42341.0 2782.0 0 0 0 0 g 0 1237.0 1061.0 3615.0 1897.0 43528.0 2184.0 1826.0 643.0 2936.0 0 0 0 0 t 0 2356.0 865.0 1302.0 799.0 1344.0 42698.0 4104.0 2157.0 4132.0 0 0 0 0
MA0496.4_rc_shift0 (MAFK_rc)		0.729	0.417	0.365	0.872	0.869	148	172	178	145	140	156.600		; assembly_5 versus MA0496.4_rc (MAFK_rc); m=25/25; ncol2=10; w=-2; offset=-2; strand=R; shift=0; score= 156.6; GCTGAGTCAk---- ; cor=0.729; Ncor=0.417; logoDP=0.365; NsEucl=0.872; NSW=0.869; rcor=148; rNcor=172; rlogoDP=178; rNsEucl=145; rNSW=140; rank_mean=156.600; match_rank= a 2285.0 4361.0 1910.0 1087.0 46798.0 2544.0 1274.0 2565.0 47492.0 3939.0 0 0 0 0 c 3327.0 44013.0 1267.0 957.0 1081.0 7573.0 1306.0 46695.0 1058.0 6706.0 0 0 0 0 g 43458.0 1921.0 882.0 47872.0 1133.0 39125.0 1670.0 1366.0 1568.0 27000.0 0 0 0 0 t 2664.0 1439.0 47675.0 1818.0 2722.0 2492.0 47484.0 1108.0 1616.0 14089.0 0 0 0 0

One-to-n matrix alignment; reference matrix: assembly_4_shift1 ; 29 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
assembly_4_shift1 (assembly_4)														; assembly_4; m=0 (reference); ncol1=12; shift=1; ncol=13; -wvAGTGAGTCaa ; Alignment reference a 0 5 4 15 1 0 0 15 0 1 1 8 10 c 0 2 5 0 0 0 1 0 0 1 12 3 0 g 0 3 4 0 14 1 14 0 15 2 1 1 2 t 0 5 2 0 0 14 0 0 0 11 1 3 3
MA0835.3_rc_shift5 (BATF3_rc)		0.952	0.555	4.935	0.935	0.970	9	31	96	8	14	31.600	6	; assembly_4 versus MA0835.3_rc (BATF3_rc); m=1/28; ncol2=7; w=0; offset=4; strand=R; shift=5; score= 31.6; -----TGAGTCA- ; cor=0.952; Ncor=0.555; logoDP=4.935; NsEucl=0.935; NSW=0.970; rcor=9; rNcor=31; rlogoDP=96; rNsEucl=8; rNSW=14; rank_mean=31.600; match_rank=6 a 0 0 0 0 0 235.0 282.0 11502.0 408.0 116.0 1238.0 11737.0 0 c 0 0 0 0 0 117.0 88.0 117.0 560.0 87.0 10420.0 37.0 0 g 0 0 0 0 0 84.0 10347.0 79.0 10589.0 92.0 62.0 59.0 0 t 0 0 0 0 0 11529.0 1248.0 267.0 408.0 11670.0 245.0 132.0 0
MA1928.2_shift5 (BNC2)		0.945	0.551	5.252	0.932	0.968	19	38	77	17	22	34.600	9	; assembly_4 versus MA1928.2 (BNC2); m=2/28; ncol2=7; w=0; offset=4; strand=D; shift=5; score= 34.6; -----TGAGTCA- ; cor=0.945; Ncor=0.551; logoDP=5.252; NsEucl=0.932; NSW=0.968; rcor=19; rNcor=38; rlogoDP=77; rNsEucl=17; rNSW=22; rank_mean=34.600; match_rank=9 a 0 0 0 0 0 147.0 134.0 5303.0 227.0 86.0 216.0 5483.0 0 c 0 0 0 0 0 66.0 72.0 117.0 838.0 106.0 5238.0 54.0 0 g 0 0 0 0 0 96.0 5184.0 61.0 4332.0 80.0 112.0 56.0 0 t 0 0 0 0 0 5363.0 282.0 191.0 275.0 5400.0 106.0 79.0 0
MA0462.3_rc_shift5 (BATF::JUN_rc)		0.946	0.552	4.945	0.933	0.968	18	36	95	16	21	37.200	16	; assembly_4 versus MA0462.3_rc (BATF::JUN_rc); m=3/28; ncol2=7; w=0; offset=4; strand=R; shift=5; score= 37.2; -----TGAGTCA- ; cor=0.946; Ncor=0.552; logoDP=4.945; NsEucl=0.933; NSW=0.968; rcor=18; rNcor=36; rlogoDP=95; rNsEucl=16; rNSW=21; rank_mean=37.200; match_rank=16 a 0 0 0 0 0 558.0 907.0 36619.0 1399.0 320.0 3785.0 37330.0 0 c 0 0 0 0 0 424.0 522.0 539.0 4188.0 350.0 33135.0 182.0 0 g 0 0 0 0 0 318.0 32770.0 241.0 31168.0 204.0 400.0 275.0 0 t 0 0 0 0 0 36854.0 3955.0 755.0 1399.0 37280.0 834.0 367.0 0
MA1988.2_rc_shift5 (Atf3_rc)		0.947	0.552	4.839	0.934	0.969	17	35	106	13	19	38.000	18	; assembly_4 versus MA1988.2_rc (Atf3_rc); m=4/28; ncol2=7; w=0; offset=4; strand=R; shift=5; score= 38; -----TGAGTCA- ; cor=0.947; Ncor=0.552; logoDP=4.839; NsEucl=0.934; NSW=0.969; rcor=17; rNcor=35; rlogoDP=106; rNsEucl=13; rNSW=19; rank_mean=38.000; match_rank=18 a 0 0 0 0 0 887.0 2087.0 50485.0 2262.0 547.0 3914.0 53085.0 0 c 0 0 0 0 0 1086.0 574.0 1365.0 4498.0 471.0 48774.0 357.0 0 g 0 0 0 0 0 673.0 46610.0 504.0 45670.0 356.0 443.0 669.0 0 t 0 0 0 0 0 52046.0 5421.0 2338.0 2262.0 53318.0 1561.0 581.0 0
MA1634.2_rc_shift5 (BATF_rc)		0.944	0.551	4.891	0.932	0.968	20	39	99	18	23	39.800	19	; assembly_4 versus MA1634.2_rc (BATF_rc); m=5/28; ncol2=7; w=0; offset=4; strand=R; shift=5; score= 39.8; -----TGAGTCA- ; cor=0.944; Ncor=0.551; logoDP=4.891; NsEucl=0.932; NSW=0.968; rcor=20; rNcor=39; rlogoDP=99; rNsEucl=18; rNSW=23; rank_mean=39.800; match_rank=19 a 0 0 0 0 0 754.0 1276.0 44736.0 2051.0 471.0 4682.0 45887.0 0 c 0 0 0 0 0 507.0 711.0 836.0 5573.0 341.0 40617.0 283.0 0 g 0 0 0 0 0 431.0 40279.0 306.0 37333.0 250.0 570.0 355.0 0 t 0 0 0 0 0 45316.0 4742.0 1130.0 2051.0 45946.0 1139.0 483.0 0
MA1141.2_shift4 (FOS::JUND)		0.796	0.597	6.190	0.891	0.893	111	9	27	104	115	73.200		; assembly_4 versus MA1141.2 (FOS::JUND); m=6/28; ncol2=9; w=0; offset=3; strand=D; shift=4; score= 73.2; ----rTGAGTCAy ; cor=0.796; Ncor=0.597; logoDP=6.190; NsEucl=0.891; NSW=0.893; rcor=111; rNcor=9; rlogoDP=27; rNsEucl=104; rNSW=115; rank_mean=73.200; match_rank= a 0 0 0 0 593.0 0.0 0.0 894.0 75.0 0.0 29.0 999.0 21.0 c 0 0 0 0 104.0 1.0 0.0 91.0 40.0 0.0 970.0 0.0 290.0 g 0 0 0 0 266.0 0.0 871.0 0.0 867.0 0.0 0.0 0.0 77.0 t 0 0 0 0 38.0 999.0 129.0 15.0 19.0 999.0 0.0 0.0 612.0
MA0477.3_rc_shift4 (FOSL1_rc)		0.783	0.587	5.685	0.888	0.887	117	13	54	111	120	83.000		; assembly_4 versus MA0477.3_rc (FOSL1_rc); m=7/28; ncol2=9; w=0; offset=3; strand=R; shift=4; score= 83; ----aTGAGTCAt ; cor=0.783; Ncor=0.587; logoDP=5.685; NsEucl=0.888; NSW=0.887; rcor=117; rNcor=13; rlogoDP=54; rNsEucl=111; rNSW=120; rank_mean=83.000; match_rank= a 0 0 0 0 38033.0 363.0 559.0 55860.0 2591.0 302.0 2246.0 56778.0 2795.0 c 0 0 0 0 6533.0 566.0 278.0 598.0 8615.0 286.0 54619.0 183.0 13127.0 g 0 0 0 0 10399.0 344.0 53711.0 163.0 43918.0 287.0 301.0 460.0 6703.0 t 0 0 0 0 2716.0 56408.0 3133.0 1060.0 2557.0 56806.0 515.0 260.0 35056.0
MA1144.2_rc_shift4 (FOSL2::JUND_rc)		0.764	0.573	6.204	0.884	0.879	127	19	25	118	127	83.200		; assembly_4 versus MA1144.2_rc (FOSL2::JUND_rc); m=8/28; ncol2=9; w=0; offset=3; strand=R; shift=4; score= 83.2; ----rTGAsTCAy ; cor=0.764; Ncor=0.573; logoDP=6.204; NsEucl=0.884; NSW=0.879; rcor=127; rNcor=19; rlogoDP=25; rNsEucl=118; rNSW=127; rank_mean=83.200; match_rank= a 0 0 0 0 583.0 0.0 0.0 934.0 58.0 0.0 10.0 999.0 14.0 c 0 0 0 0 113.0 0.0 0.0 60.0 292.0 0.0 990.0 0.0 291.0 g 0 0 0 0 266.0 0.0 860.0 0.0 604.0 1.0 0.0 0.0 60.0 t 0 0 0 0 38.0 999.0 140.0 6.0 46.0 998.0 0.0 0.0 634.0
MA1128.2_rc_shift4 (FOSL1::JUN_rc)		0.782	0.587	5.556	0.890	0.890	118	14	60	106	118	83.200		; assembly_4 versus MA1128.2_rc (FOSL1::JUN_rc); m=9/28; ncol2=9; w=0; offset=3; strand=R; shift=4; score= 83.2; ----aTGAGTCAy ; cor=0.782; Ncor=0.587; logoDP=5.556; NsEucl=0.890; NSW=0.890; rcor=118; rNcor=14; rlogoDP=60; rNsEucl=106; rNSW=118; rank_mean=83.200; match_rank= a 0 0 0 0 579.0 4.0 4.0 826.0 97.0 3.0 38.0 996.0 26.0 c 0 0 0 0 119.0 9.0 2.0 140.0 51.0 2.0 957.0 1.0 283.0 g 0 0 0 0 245.0 4.0 835.0 2.0 826.0 2.0 2.0 2.0 89.0 t 0 0 0 0 57.0 984.0 159.0 33.0 26.0 994.0 3.0 1.0 602.0
MA1633.2_rc_shift4 (BACH1_rc)		0.780	0.585	5.920	0.883	0.878	120	15	38	121	131	85.000		; assembly_4 versus MA1633.2_rc (BACH1_rc); m=10/28; ncol2=9; w=0; offset=3; strand=R; shift=4; score= 85; ----aTGAGTCAT ; cor=0.780; Ncor=0.585; logoDP=5.920; NsEucl=0.883; NSW=0.878; rcor=120; rNcor=15; rlogoDP=38; rNsEucl=121; rNSW=131; rank_mean=85.000; match_rank= a 0 0 0 0 32322.0 17.0 18.0 32322.0 517.0 14.0 811.0 32322.0 1048.0 c 0 0 0 0 2962.0 50.0 52.0 3303.0 0.0 24.0 32322.0 25.0 6187.0 g 0 0 0 0 8737.0 39.0 32322.0 31.0 32322.0 38.0 13.0 25.0 1482.0 t 0 0 0 0 4970.0 32322.0 2834.0 534.0 551.0 32322.0 0.0 7.0 32322.0
MA1135.2_rc_shift4 (FOSB::JUNB_rc)		0.760	0.570	6.075	0.884	0.878	130	21	29	120	129	85.800		; assembly_4 versus MA1135.2_rc (FOSB::JUNB_rc); m=11/28; ncol2=9; w=0; offset=3; strand=R; shift=4; score= 85.8; ----rTGAsTCAy ; cor=0.760; Ncor=0.570; logoDP=6.075; NsEucl=0.884; NSW=0.878; rcor=130; rNcor=21; rlogoDP=29; rNsEucl=120; rNSW=129; rank_mean=85.800; match_rank= a 0 0 0 0 578.0 1.0 1.0 958.0 61.0 1.0 19.0 998.0 20.0 c 0 0 0 0 126.0 1.0 1.0 39.0 309.0 1.0 980.0 1.0 321.0 g 0 0 0 0 259.0 0.0 808.0 1.0 596.0 1.0 0.0 0.0 61.0 t 0 0 0 0 37.0 998.0 191.0 2.0 34.0 997.0 1.0 1.0 598.0
MA1134.2_shift4 (FOS::JUNB)		0.766	0.574	5.899	0.884	0.879	126	18	41	119	128	86.400		; assembly_4 versus MA1134.2 (FOS::JUNB); m=12/28; ncol2=9; w=0; offset=3; strand=D; shift=4; score= 86.4; ----rTGAsTCAy ; cor=0.766; Ncor=0.574; logoDP=5.899; NsEucl=0.884; NSW=0.879; rcor=126; rNcor=18; rlogoDP=41; rNsEucl=119; rNSW=128; rank_mean=86.400; match_rank= a 0 0 0 0 593.0 1.0 1.0 965.0 48.0 1.0 27.0 998.0 7.0 c 0 0 0 0 105.0 1.0 1.0 30.0 309.0 1.0 971.0 1.0 284.0 g 0 0 0 0 267.0 1.0 868.0 1.0 618.0 3.0 1.0 1.0 51.0 t 0 0 0 0 36.0 998.0 131.0 4.0 25.0 996.0 1.0 1.0 658.0
MA1138.2_rc_shift4 (FOSL2::JUNB_rc)		0.755	0.566	6.207	0.882	0.875	133	24	24	124	133	87.600		; assembly_4 versus MA1138.2_rc (FOSL2::JUNB_rc); m=13/28; ncol2=9; w=0; offset=3; strand=R; shift=4; score= 87.6; ----rTGAsTCAy ; cor=0.755; Ncor=0.566; logoDP=6.207; NsEucl=0.882; NSW=0.875; rcor=133; rNcor=24; rlogoDP=24; rNsEucl=124; rNSW=133; rank_mean=87.600; match_rank= a 0 0 0 0 602.0 0.0 0.0 973.0 85.0 0.0 14.0 999.0 13.0 c 0 0 0 0 112.0 0.0 0.0 26.0 292.0 0.0 985.0 0.0 314.0 g 0 0 0 0 251.0 0.0 831.0 0.0 568.0 0.0 0.0 0.0 53.0 t 0 0 0 0 35.0 999.0 168.0 1.0 54.0 999.0 0.0 0.0 621.0
MA1130.2_shift4 (FOSL2::JUN)		0.780	0.585	5.245	0.889	0.890	121	16	78	108	119	88.400		; assembly_4 versus MA1130.2 (FOSL2::JUN); m=14/28; ncol2=9; w=0; offset=3; strand=D; shift=4; score= 88.4; ----rTGAGTCAy ; cor=0.780; Ncor=0.585; logoDP=5.245; NsEucl=0.889; NSW=0.890; rcor=121; rNcor=16; rlogoDP=78; rNsEucl=108; rNSW=119; rank_mean=88.400; match_rank= a 0 0 0 0 542.0 1.0 1.0 847.0 103.0 1.0 20.0 998.0 19.0 c 0 0 0 0 121.0 1.0 1.0 123.0 141.0 1.0 979.0 0.0 299.0 g 0 0 0 0 282.0 1.0 840.0 1.0 698.0 1.0 1.0 1.0 93.0 t 0 0 0 0 55.0 998.0 158.0 29.0 58.0 998.0 1.0 1.0 589.0
MA0099.4_shift4 (FOS::JUN)		0.768	0.576	4.949	0.887	0.886	125	17	94	113	121	94.000		; assembly_4 versus MA0099.4 (FOS::JUN); m=15/28; ncol2=9; w=0; offset=3; strand=D; shift=4; score= 94; ----rTGAGTCAy ; cor=0.768; Ncor=0.576; logoDP=4.949; NsEucl=0.887; NSW=0.886; rcor=125; rNcor=17; rlogoDP=94; rNsEucl=113; rNSW=121; rank_mean=94.000; match_rank= a 0 0 0 0 592.0 3.0 7.0 820.0 78.0 5.0 30.0 992.0 24.0 c 0 0 0 0 111.0 5.0 1.0 131.0 180.0 2.0 963.0 2.0 313.0 g 0 0 0 0 257.0 2.0 824.0 4.0 688.0 2.0 3.0 2.0 95.0 t 0 0 0 0 40.0 990.0 168.0 45.0 54.0 991.0 4.0 4.0 568.0
MA0490.3_rc_shift4 (JUNB_rc)		0.756	0.567	5.497	0.881	0.872	132	23	64	127	135	96.200		; assembly_4 versus MA0490.3_rc (JUNB_rc); m=16/28; ncol2=9; w=0; offset=3; strand=R; shift=4; score= 96.2; ----ATGAGTCAT ; cor=0.756; Ncor=0.567; logoDP=5.497; NsEucl=0.881; NSW=0.872; rcor=132; rNcor=23; rlogoDP=64; rNsEucl=127; rNSW=135; rank_mean=96.200; match_rank= a 0 0 0 0 59750.0 693.0 797.0 76655.0 4798.0 682.0 3779.0 78342.0 3866.0 c 0 0 0 0 7508.0 900.0 617.0 913.0 10519.0 550.0 74757.0 322.0 11566.0 g 0 0 0 0 8876.0 588.0 73199.0 289.0 59784.0 523.0 550.0 654.0 7817.0 t 0 0 0 0 3722.0 77675.0 5243.0 1999.0 4755.0 78101.0 770.0 538.0 56607.0
MA0655.1_rc_shift4 (JDP2_rc)		0.748	0.561	6.377	0.873	0.855	139	27	20	142	155	96.600		; assembly_4 versus MA0655.1_rc (JDP2_rc); m=17/28; ncol2=9; w=0; offset=3; strand=R; shift=4; score= 96.6; ----ATGASTCAT ; cor=0.748; Ncor=0.561; logoDP=6.377; NsEucl=0.873; NSW=0.855; rcor=139; rNcor=27; rlogoDP=20; rNsEucl=142; rNSW=155; rank_mean=96.600; match_rank= a 0 0 0 0 1634.0 7.0 9.0 1634.0 13.0 25.0 22.0 1634.0 8.0 c 0 0 0 0 5.0 0.0 3.0 6.0 434.0 2.0 1634.0 1.0 140.0 g 0 0 0 0 404.0 0.0 1634.0 0.0 1200.0 1.0 3.0 6.0 19.0 t 0 0 0 0 22.0 1634.0 22.0 6.0 14.0 1634.0 0.0 5.0 1634.0
MA0491.3_rc_shift4 (JUND_rc)		0.752	0.564	5.636	0.879	0.869	134	26	57	131	139	97.400		; assembly_4 versus MA0491.3_rc (JUND_rc); m=18/28; ncol2=9; w=0; offset=3; strand=R; shift=4; score= 97.4; ----ATGAGTCAt ; cor=0.752; Ncor=0.564; logoDP=5.636; NsEucl=0.879; NSW=0.869; rcor=134; rNcor=26; rlogoDP=57; rNsEucl=131; rNSW=139; rank_mean=97.400; match_rank= a 0 0 0 0 83216.0 809.0 1449.0 102249.0 4650.0 925.0 3920.0 104101.0 5020.0 c 0 0 0 0 7908.0 965.0 953.0 1147.0 20633.0 573.0 99787.0 443.0 20586.0 g 0 0 0 0 12025.0 751.0 98628.0 496.0 76028.0 650.0 873.0 757.0 10173.0 t 0 0 0 0 2796.0 103420.0 4915.0 2053.0 4634.0 103797.0 1365.0 644.0 70166.0
MA0489.3_rc_shift4 (Jun_rc)		0.836	0.557	0.323	0.894	0.910	94	29	180	97	100	100.000		; assembly_4 versus MA0489.3_rc (Jun_rc); m=19/28; ncol2=8; w=0; offset=3; strand=R; shift=4; score= 100; ----aTGAGTCA- ; cor=0.836; Ncor=0.557; logoDP=0.323; NsEucl=0.894; NSW=0.910; rcor=94; rNcor=29; rlogoDP=180; rNsEucl=97; rNSW=100; rank_mean=100.000; match_rank= a 0 0 0 0 61451.0 1633.0 969.0 89140.0 4185.0 1648.0 2739.0 91503.0 0 c 0 0 0 0 13040.0 1147.0 1228.0 1009.0 14953.0 1717.0 88928.0 718.0 0 g 0 0 0 0 14637.0 1827.0 88215.0 920.0 71105.0 1493.0 1468.0 716.0 0 t 0 0 0 0 4975.0 89496.0 3691.0 3034.0 3860.0 89245.0 968.0 1166.0 0
MA1132.2_rc_shift5 (JUN::JUNB_rc)		0.816	0.544	0.569	0.896	0.914	102	41	173	91	96	100.600		; assembly_4 versus MA1132.2_rc (JUN::JUNB_rc); m=20/28; ncol2=8; w=0; offset=4; strand=R; shift=5; score= 100.6; -----TGmGTCAt ; cor=0.816; Ncor=0.544; logoDP=0.569; NsEucl=0.896; NSW=0.914; rcor=102; rNcor=41; rlogoDP=173; rNsEucl=91; rNSW=96; rank_mean=100.600; match_rank= a 0 0 0 0 0 27.0 122.0 565.0 33.0 18.0 47.0 946.0 50.0 c 0 0 0 0 0 18.0 10.0 353.0 115.0 28.0 921.0 34.0 189.0 g 0 0 0 0 0 24.0 707.0 24.0 826.0 10.0 21.0 10.0 134.0 t 0 0 0 0 0 931.0 161.0 58.0 27.0 944.0 10.0 11.0 627.0
MA1142.2_rc_shift5 (FOSL1::JUND_rc)		0.798	0.532	0.591	0.895	0.912	110	47	172	93	98	104.000		; assembly_4 versus MA1142.2_rc (FOSL1::JUND_rc); m=21/28; ncol2=8; w=0; offset=4; strand=R; shift=5; score= 104; -----TkagTCAy ; cor=0.798; Ncor=0.532; logoDP=0.591; NsEucl=0.895; NSW=0.912; rcor=110; rNcor=47; rlogoDP=172; rNsEucl=93; rNSW=98; rank_mean=104.000; match_rank= a 0 0 0 0 0 31.0 64.0 669.0 180.0 41.0 140.0 913.0 40.0 c 0 0 0 0 0 17.0 25.0 187.0 191.0 82.0 777.0 34.0 282.0 g 0 0 0 0 0 40.0 641.0 45.0 581.0 12.0 61.0 23.0 127.0 t 0 0 0 0 0 912.0 270.0 98.0 49.0 864.0 22.0 30.0 551.0
MA1137.2_rc_shift4 (FOSL1::JUNB_rc)		0.747	0.560	4.059	0.887	0.885	141	28	141	114	122	109.200		; assembly_4 versus MA1137.2_rc (FOSL1::JUNB_rc); m=22/28; ncol2=9; w=0; offset=3; strand=R; shift=4; score= 109.2; ----aTKAgTCAy ; cor=0.747; Ncor=0.560; logoDP=4.059; NsEucl=0.887; NSW=0.885; rcor=141; rNcor=28; rlogoDP=141; rNsEucl=114; rNSW=122; rank_mean=109.200; match_rank= a 0 0 0 0 552.0 37.0 37.0 803.0 113.0 42.0 63.0 945.0 47.0 c 0 0 0 0 170.0 38.0 9.0 115.0 198.0 21.0 880.0 16.0 287.0 g 0 0 0 0 225.0 21.0 683.0 23.0 626.0 20.0 21.0 16.0 100.0 t 0 0 0 0 53.0 904.0 271.0 59.0 63.0 917.0 36.0 23.0 566.0
MA0478.2_rc_shift4 (FOSL2_rc)		0.774	0.536	0.853	0.885	0.882	122	46	170	116	125	115.800		; assembly_4 versus MA0478.2_rc (FOSL2_rc); m=23/28; ncol2=10; w=0; offset=3; strand=R; shift=4; score= 115.8; ----vTGAsTCAy ; cor=0.774; Ncor=0.536; logoDP=0.853; NsEucl=0.885; NSW=0.882; rcor=122; rNcor=46; rlogoDP=170; rNsEucl=116; rNSW=125; rank_mean=115.800; match_rank= a 0 0 0 0 1986.0 0.0 0.0 5318.0 194.0 0.0 0.0 5318.0 74.0 c 0 0 0 0 1933.0 0.0 0.0 0.0 1838.0 192.0 5318.0 0.0 2328.0 g 0 0 0 0 1399.0 0.0 5113.0 0.0 3286.0 51.0 0.0 0.0 55.0 t 0 0 0 0 0.0 5318.0 205.0 0.0 0.0 5075.0 0.0 0.0 2861.0
MA0476.2_rc_shift4 (FOS_rc)		0.795	0.530	0.324	0.879	0.883	112	48	179	133	124	119.200		; assembly_4 versus MA0476.2_rc (FOS_rc); m=24/28; ncol2=8; w=0; offset=3; strand=R; shift=4; score= 119.2; ----ATGAsTCA- ; cor=0.795; Ncor=0.530; logoDP=0.324; NsEucl=0.879; NSW=0.883; rcor=112; rNcor=48; rlogoDP=179; rNsEucl=133; rNSW=124; rank_mean=119.200; match_rank= a 0 0 0 0 21777.0 0.0 0.0 29396.0 3113.0 0.0 2288.0 29396.0 0 c 0 0 0 0 1538.0 0.0 0.0 0.0 11206.0 0.0 27108.0 0.0 0 g 0 0 0 0 5823.0 0.0 29396.0 0.0 14079.0 0.0 0.0 0.0 0 t 0 0 0 0 258.0 29396.0 0.0 0.0 998.0 29396.0 0.0 0.0 0
MA1523.2_rc_shift4 (MSANTD3_rc)		0.815	0.476	0.368	0.881	0.900	103	99	177	128	110	123.400		; assembly_4 versus MA1523.2_rc (MSANTD3_rc); m=25/28; ncol2=7; w=0; offset=3; strand=R; shift=4; score= 123.4; ----kTGAGTG-- ; cor=0.815; Ncor=0.476; logoDP=0.368; NsEucl=0.881; NSW=0.900; rcor=103; rNcor=99; rlogoDP=177; rNsEucl=128; rNSW=110; rank_mean=123.400; match_rank= a 0 0 0 0 96.0 59.0 60.0 954.0 45.0 16.0 180.0 0 0 c 0 0 0 0 63.0 24.0 29.0 0.0 27.0 2.0 31.0 0 0 g 0 0 0 0 568.0 140.0 862.0 7.0 896.0 0.0 723.0 0 0 t 0 0 0 0 271.0 775.0 47.0 37.0 31.0 980.0 64.0 0 0
MA0063.3_rc_shift0 (NKX2-5_rc)		0.871	0.402	0.166	0.892	0.930	74	185	185	102	89	127.000		; assembly_4 versus MA0063.3_rc (NKX2-5_rc); m=26/28; ncol2=7; w=-1; offset=-1; strand=R; shift=0; score= 127; TTGAGTG------ ; cor=0.871; Ncor=0.402; logoDP=0.166; NsEucl=0.892; NSW=0.930; rcor=74; rNcor=185; rlogoDP=185; rNsEucl=102; rNSW=89; rank_mean=127.000; match_rank= a 250.0 288.0 841.0 5166.0 153.0 74.0 322.0 0 0 0 0 0 0 c 98.0 217.0 62.0 61.0 49.0 76.0 24.0 0 0 0 0 0 0 g 165.0 120.0 4319.0 82.0 5098.0 48.0 5002.0 0 0 0 0 0 0 t 4931.0 4819.0 222.0 135.0 144.0 5246.0 96.0 0 0 0 0 0 0
MA1652.2_shift0 (ZKSCAN5)		0.731	0.450	5.720	0.865	0.855	147	131	53	153	154	127.600		; assembly_4 versus MA1652.2 (ZKSCAN5); m=27/28; ncol2=9; w=-1; offset=-1; strand=D; shift=0; score= 127.6; GGArGTGAg---- ; cor=0.731; Ncor=0.450; logoDP=5.720; NsEucl=0.865; NSW=0.855; rcor=147; rNcor=131; rlogoDP=53; rNsEucl=153; rNSW=154; rank_mean=127.600; match_rank= a 136.0 38.0 3199.0 1446.0 92.0 73.0 43.0 3199.0 375.0 0 0 0 0 c 30.0 27.0 62.0 27.0 37.0 86.0 24.0 41.0 370.0 0 0 0 0 g 3111.0 3236.0 47.0 1827.0 3149.0 76.0 3251.0 62.0 2034.0 0 0 0 0 t 50.0 26.0 19.0 27.0 49.0 3092.0 9.0 25.0 548.0 0 0 0 0
MA0914.2_rc_shift1 (ISL2_rc)		0.810	0.405	1.076	0.881	0.915	107	183	169	125	94	135.600		; assembly_4 versus MA0914.2_rc (ISL2_rc); m=28/28; ncol2=6; w=0; offset=0; strand=R; shift=1; score= 135.6; -TAAkTG------ ; cor=0.810; Ncor=0.405; logoDP=1.076; NsEucl=0.881; NSW=0.915; rcor=107; rNcor=183; rlogoDP=169; rNsEucl=125; rNSW=94; rank_mean=135.600; match_rank= a 0 1354.0 5631.0 5631.0 398.0 248.0 1019.0 0 0 0 0 0 0 c 0 59.0 13.0 169.0 171.0 134.0 126.0 0 0 0 0 0 0 g 0 206.0 718.0 130.0 5631.0 162.0 5631.0 0 0 0 0 0 0 t 0 5631.0 278.0 218.0 3161.0 5631.0 160.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: assembly_3_shift1 ; 10 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
assembly_3_shift1 (assembly_3)														; assembly_3; m=0 (reference); ncol1=11; shift=1; ncol=12; -wcCCCAGCChy ; Alignment reference a 0 12 8 2 1 0 41 5 1 2 16 8 c 0 10 18 32 38 40 0 0 39 33 14 12 g 0 9 8 4 0 1 1 36 2 1 1 7 t 0 11 8 4 3 1 0 1 0 6 11 15
MA2341.1_shift3 (FEZF2)		0.916	0.666	5.165	0.927	0.957	37	2	81	27	36	36.600	12	; assembly_3 versus MA2341.1 (FEZF2); m=1/9; ncol2=8; w=0; offset=2; strand=D; shift=3; score= 36.6; ---CCCAGCCT- ; cor=0.916; Ncor=0.666; logoDP=5.165; NsEucl=0.927; NSW=0.957; rcor=37; rNcor=2; rlogoDP=81; rNsEucl=27; rNSW=36; rank_mean=36.600; match_rank=12 a 0 0 0 17.0 5.0 4.0 231.0 6.0 8.0 7.0 14.0 0 c 0 0 0 202.0 206.0 258.0 15.0 8.0 224.0 247.0 10.0 0 g 0 0 0 10.0 9.0 0.0 14.0 251.0 28.0 2.0 8.0 0 t 0 0 0 36.0 45.0 3.0 5.0 0.0 5.0 9.0 233.0 0
MA2125.1_shift1 (Zfp809)		0.874	0.715	5.494	0.917	0.938	65	1	66	36	59	45.400	24	; assembly_3 versus MA2125.1 (Zfp809); m=2/9; ncol2=9; w=0; offset=0; strand=D; shift=1; score= 45.4; -wTCCCAGCc-- ; cor=0.874; Ncor=0.715; logoDP=5.494; NsEucl=0.917; NSW=0.938; rcor=65; rNcor=1; rlogoDP=66; rNsEucl=36; rNSW=59; rank_mean=45.400; match_rank=24 a 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 217.0 0 0 c 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 1091.0 0 0 g 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 115.0 0 0 t 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0 242.0 0 0
MA1656.2_shift0 (ZNF449)		0.736	0.552	5.389	0.878	0.866	143	34	71	134	143	105.000		; assembly_3 versus MA1656.2 (ZNF449); m=3/9; ncol2=10; w=-1; offset=-1; strand=D; shift=0; score= 105; aAGCCCAACc-- ; cor=0.736; Ncor=0.552; logoDP=5.389; NsEucl=0.878; NSW=0.866; rcor=143; rNcor=34; rlogoDP=71; rNsEucl=134; rNSW=143; rank_mean=105.000; match_rank= a 4135.0 6239.0 108.0 139.0 64.0 68.0 6851.0 6620.0 184.0 1143.0 0 0 c 1759.0 582.0 92.0 7088.0 7540.0 7479.0 300.0 96.0 7244.0 5029.0 0 0 g 1463.0 224.0 7368.0 322.0 28.0 54.0 182.0 829.0 167.0 473.0 0 0 t 303.0 615.0 92.0 111.0 28.0 59.0 327.0 115.0 65.0 1015.0 0 0
MA0039.5_shift2 (KLF4)		0.762	0.555	4.346	0.876	0.878	128	33	130	136	130	111.400		; assembly_3 versus MA0039.5 (KLF4); m=4/9; ncol2=8; w=0; offset=1; strand=D; shift=2; score= 111.4; --CCCCACCC-- ; cor=0.762; Ncor=0.555; logoDP=4.346; NsEucl=0.876; NSW=0.878; rcor=128; rNcor=33; rlogoDP=130; rNsEucl=136; rNSW=130; rank_mean=111.400; match_rank= a 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 c 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 g 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 t 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0
MA2121.1_shift2 (ZNF213)		0.708	0.545	4.427	0.889	0.876	176	40	126	109	132	116.600		; assembly_3 versus MA2121.1 (ZNF213); m=5/9; ncol2=12; w=0; offset=1; strand=D; shift=2; score= 116.6; --gCCCAGGCwG ; cor=0.708; Ncor=0.545; logoDP=4.427; NsEucl=0.889; NSW=0.876; rcor=176; rNcor=40; rlogoDP=126; rNsEucl=109; rNSW=132; rank_mean=116.600; match_rank= a 0 0 119.0 26.0 18.0 15.0 577.0 10.0 12.0 16.0 229.0 42.0 c 0 0 89.0 581.0 603.0 630.0 34.0 13.0 25.0 642.0 97.0 76.0 g 0 0 403.0 52.0 34.0 34.0 54.0 661.0 639.0 22.0 124.0 519.0 t 0 0 76.0 28.0 32.0 8.0 22.0 3.0 11.0 7.0 237.0 50.0
MA1513.2_shift3 (KLF15)		0.704	0.512	5.731	0.853	0.828	180	59	51	177	185	130.400		; assembly_3 versus MA1513.2 (KLF15); m=6/9; ncol2=8; w=0; offset=2; strand=D; shift=3; score= 130.4; ---cCCCGCCC- ; cor=0.704; Ncor=0.512; logoDP=5.731; NsEucl=0.853; NSW=0.828; rcor=180; rNcor=59; rlogoDP=51; rNsEucl=177; rNSW=185; rank_mean=130.400; match_rank= a 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 c 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 g 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 t 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0
MA1964.2_shift4 (SMAD2)		0.747	0.408	5.108	0.836	0.839	140	181	82	185	179	153.400		; assembly_3 versus MA1964.2 (SMAD2); m=7/9; ncol2=6; w=0; offset=3; strand=D; shift=4; score= 153.4; ----CCAGAC-- ; cor=0.747; Ncor=0.408; logoDP=5.108; NsEucl=0.836; NSW=0.839; rcor=140; rNcor=181; rlogoDP=82; rNsEucl=185; rNSW=179; rank_mean=153.400; match_rank= a 0 0 0 0 42.0 6.0 3447.0 7.0 3747.0 1.0 0 0 c 0 0 0 0 3610.0 3484.0 149.0 30.0 0.0 3757.0 0 0 g 0 0 0 0 86.0 171.0 154.0 3703.0 0.0 0.0 0 0 t 0 0 0 0 20.0 97.0 8.0 18.0 11.0 0.0 0 0
MA1116.2_rc_shift1 (RBPJ_rc)		0.781	0.426	1.741	0.848	0.861	119	163	167	180	147	155.200		; assembly_3 versus MA1116.2_rc (RBPJ_rc); m=8/9; ncol2=6; w=0; offset=0; strand=R; shift=1; score= 155.2; -TTCCCA----- ; cor=0.781; Ncor=0.426; logoDP=1.741; NsEucl=0.848; NSW=0.861; rcor=119; rNcor=163; rlogoDP=167; rNsEucl=180; rNSW=147; rank_mean=155.200; match_rank= a 0 4.0 29.0 78.0 60.0 1.0 2386.0 0 0 0 0 0 c 0 1.0 4.0 2309.0 2313.0 2341.0 2.0 0 0 0 0 0 g 0 15.0 0.0 8.0 20.0 25.0 12.0 0 0 0 0 0 t 0 2382.0 2369.0 7.0 9.0 35.0 2.0 0 0 0 0 0
MA1986.2_shift0 (ZNF692)		0.704	0.410	4.765	0.848	0.837	181	178	110	181	180	166.000		; assembly_3 versus MA1986.2 (ZNF692); m=9/9; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score= 166; gGGCCCAs---- ; cor=0.704; Ncor=0.410; logoDP=4.765; NsEucl=0.848; NSW=0.837; rcor=181; rNcor=178; rlogoDP=110; rNsEucl=181; rNSW=180; rank_mean=166.000; match_rank= a 1403.0 0.0 31.0 27.0 41.0 3.0 10535.0 852.0 0 0 0 0 c 1314.0 90.0 4.0 10689.0 10446.0 10545.0 0.0 4998.0 0 0 0 0 g 6833.0 10642.0 10684.0 7.0 241.0 176.0 210.0 3703.0 0 0 0 0 t 1195.0 13.0 26.0 22.0 17.0 21.0 0.0 1192.0 0 0 0 0

One-to-n matrix alignment; reference matrix: assembly_1_shift3 ; 10 matrices ; sort_field=rank_mean

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
assembly_1_shift3 (assembly_1)														; assembly_1; m=0 (reference); ncol1=12; shift=3; ncol=15; ---kyCCTGGGCCmd ; Alignment reference a 0 0 0 1 0 0 0 0 0 1 0 1 0 4 4 c 0 0 0 3 5 14 13 0 0 0 0 13 13 8 2 g 0 0 0 4 3 1 0 0 15 13 15 1 0 0 4 t 0 0 0 7 7 0 2 15 0 1 0 0 2 3 5
MA1986.2_rc_shift6 (ZNF692_rc)		0.930	0.620	2.948	0.929	0.960	31	5	162	21	31	50.000	30	; assembly_1 versus MA1986.2_rc (ZNF692_rc); m=1/9; ncol2=8; w=0; offset=3; strand=R; shift=6; score= 50; ------sTGGGCCc- ; cor=0.930; Ncor=0.620; logoDP=2.948; NsEucl=0.929; NSW=0.960; rcor=31; rNcor=5; rlogoDP=162; rNsEucl=21; rNSW=31; rank_mean=50.000; match_rank=30 a 0 0 0 0 0 0 1192.0 0.0 21.0 17.0 22.0 26.0 13.0 1195.0 0 c 0 0 0 0 0 0 3703.0 210.0 176.0 241.0 7.0 10684.0 10642.0 6833.0 0 g 0 0 0 0 0 0 4998.0 0.0 10545.0 10446.0 10689.0 4.0 90.0 1314.0 0 t 0 0 0 0 0 0 852.0 10535.0 3.0 41.0 27.0 31.0 0.0 1403.0 0
MA2121.1_rc_shift0 (ZNF213_rc)		0.869	0.521	0.737	0.915	0.936	75	55	171	40	71	82.400		; assembly_1 versus MA2121.1_rc (ZNF213_rc); m=2/9; ncol2=12; w=-3; offset=-3; strand=R; shift=0; score= 82.4; ysCwGCCTGGGc--- ; cor=0.869; Ncor=0.521; logoDP=0.737; NsEucl=0.915; NSW=0.936; rcor=75; rNcor=55; rlogoDP=171; rNsEucl=40; rNSW=71; rank_mean=82.400; match_rank= a 55.0 47.0 50.0 237.0 7.0 11.0 3.0 22.0 8.0 32.0 28.0 76.0 0 0 0 c 330.0 260.0 519.0 124.0 22.0 639.0 661.0 54.0 34.0 34.0 52.0 403.0 0 0 0 g 86.0 319.0 76.0 97.0 642.0 25.0 13.0 34.0 630.0 603.0 581.0 89.0 0 0 0 t 216.0 61.0 42.0 229.0 16.0 12.0 10.0 577.0 15.0 18.0 26.0 119.0 0 0 0
MA2330.1_rc_shift1 (ZBTB24_rc)		0.872	0.498	0.428	0.912	0.938	71	79	175	44	60	85.800		; assembly_1 versus MA2330.1_rc (ZBTB24_rc); m=3/9; ncol2=10; w=-2; offset=-2; strand=R; shift=1; score= 85.8; -gGGTCCTGGg---- ; cor=0.872; Ncor=0.498; logoDP=0.428; NsEucl=0.912; NSW=0.938; rcor=71; rNcor=79; rlogoDP=175; rNsEucl=44; rNSW=60; rank_mean=85.800; match_rank= a 0 134.0 55.0 33.0 72.0 35.0 30.0 46.0 26.0 61.0 102.0 0 0 0 0 c 0 74.0 48.0 49.0 57.0 677.0 738.0 62.0 24.0 47.0 127.0 0 0 0 0 g 0 557.0 641.0 705.0 70.0 67.0 35.0 53.0 750.0 662.0 534.0 0 0 0 0 t 0 63.0 84.0 41.0 629.0 49.0 25.0 667.0 28.0 58.0 65.0 0 0 0 0
MA1979.2_shift3 (ZNF416)		0.713	0.594	7.993	0.879	0.854	168	11	1	132	158	94.000		; assembly_1 versus MA1979.2 (ZNF416); m=4/9; ncol2=10; w=0; offset=0; strand=D; shift=3; score= 94; ---TaTCTGGGCa-- ; cor=0.713; Ncor=0.594; logoDP=7.993; NsEucl=0.879; NSW=0.854; rcor=168; rNcor=11; rlogoDP=1; rNsEucl=132; rNSW=158; rank_mean=94.000; match_rank= a 0 0 0 47.0 197.0 48.0 1.0 2.0 1.0 2.0 0.0 4.0 212.0 0 0 c 0 0 0 32.0 25.0 28.0 334.0 6.0 7.0 5.0 1.0 320.0 38.0 0 0 g 0 0 0 26.0 77.0 15.0 7.0 1.0 335.0 335.0 341.0 3.0 29.0 0 0 t 0 0 0 240.0 46.0 254.0 3.0 336.0 2.0 3.0 3.0 18.0 66.0 0 0
MA1548.2_shift8 (PLAGL2)		0.826	0.445	5.079	0.883	0.904	99	137	86	122	107	110.200		; assembly_1 versus MA1548.2 (PLAGL2); m=5/9; ncol2=8; w=0; offset=5; strand=D; shift=8; score= 110.2; --------GGGCCCC ; cor=0.826; Ncor=0.445; logoDP=5.079; NsEucl=0.883; NSW=0.904; rcor=99; rNcor=137; rlogoDP=86; rNsEucl=122; rNSW=107; rank_mean=110.200; match_rank= a 0 0 0 0 0 0 0 0 39.0 0.0 0.0 0.0 0.0 0.0 0.0 c 0 0 0 0 0 0 0 0 39.0 0.0 151.0 799.0 999.0 999.0 925.0 g 0 0 0 0 0 0 0 0 813.0 999.0 848.0 200.0 0.0 0.0 0.0 t 0 0 0 0 0 0 0 0 107.0 0.0 0.0 0.0 0.0 0.0 74.0
MA1615.2_shift7 (Plagl1)		0.713	0.475	5.097	0.863	0.849	169	101	84	165	173	138.400		; assembly_1 versus MA1615.2 (Plagl1); m=6/9; ncol2=8; w=0; offset=4; strand=D; shift=7; score= 138.4; -------tGGGGCCA ; cor=0.713; Ncor=0.475; logoDP=5.097; NsEucl=0.863; NSW=0.849; rcor=169; rNcor=101; rlogoDP=84; rNsEucl=165; rNSW=173; rank_mean=138.400; match_rank= a 0 0 0 0 0 0 0 1919.0 197.0 1213.0 187.0 180.0 782.0 181.0 12064.0 c 0 0 0 0 0 0 0 1471.0 243.0 356.0 266.0 336.0 12737.0 13152.0 686.0 g 0 0 0 0 0 0 0 1338.0 13595.0 12261.0 13517.0 13495.0 313.0 422.0 1032.0 t 0 0 0 0 0 0 0 9425.0 118.0 323.0 183.0 142.0 321.0 398.0 371.0
MA1604.2_rc_shift2 (Ebf2_rc)		0.728	0.448	2.470	0.865	0.854	149	132	164	155	159	151.800		; assembly_1 versus MA1604.2_rc (Ebf2_rc); m=7/9; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score= 151.8; --TCCCTTGGG---- ; cor=0.728; Ncor=0.448; logoDP=2.470; NsEucl=0.865; NSW=0.854; rcor=149; rNcor=132; rlogoDP=164; rNsEucl=155; rNSW=159; rank_mean=151.800; match_rank= a 0 0 1321.0 586.0 379.0 182.0 2124.0 1855.0 447.0 1237.0 192.0 0 0 0 0 c 0 0 1701.0 24124.0 24386.0 25103.0 3635.0 1427.0 242.0 259.0 376.0 0 0 0 0 g 0 0 1437.0 580.0 220.0 239.0 1347.0 3744.0 25137.0 24252.0 25497.0 0 0 0 0 t 0 0 21802.0 971.0 1276.0 737.0 19155.0 19235.0 435.0 513.0 196.0 0 0 0 0
MA1637.2_rc_shift2 (EBF3_rc)		0.721	0.444	2.518	0.863	0.851	155	138	163	161	169	157.200		; assembly_1 versus MA1637.2_rc (EBF3_rc); m=8/9; ncol2=9; w=-1; offset=-1; strand=R; shift=2; score= 157.2; --TCCCTTGGG---- ; cor=0.721; Ncor=0.444; logoDP=2.518; NsEucl=0.863; NSW=0.851; rcor=155; rNcor=138; rlogoDP=163; rNsEucl=161; rNSW=169; rank_mean=157.200; match_rank= a 0 0 1596.0 463.0 362.0 99.0 1612.0 1903.0 385.0 738.0 185.0 0 0 0 0 c 0 0 1985.0 20515.0 20589.0 21188.0 3374.0 1436.0 324.0 261.0 361.0 0 0 0 0 g 0 0 1819.0 515.0 230.0 260.0 1150.0 3634.0 21017.0 20681.0 21297.0 0 0 0 0 t 0 0 16662.0 569.0 881.0 515.0 15926.0 15089.0 336.0 382.0 219.0 0 0 0 0
MA2002.2_rc_shift3 (Zfp335_rc)		0.714	0.417	0.423	0.852	0.847	165	173	176	178	175	173.400		; assembly_1 versus MA2002.2_rc (Zfp335_rc); m=9/9; ncol2=7; w=0; offset=0; strand=R; shift=3; score= 173.4; ---TGCCTGa----- ; cor=0.714; Ncor=0.417; logoDP=0.423; NsEucl=0.852; NSW=0.847; rcor=165; rNcor=173; rlogoDP=176; rNsEucl=178; rNSW=175; rank_mean=173.400; match_rank= a 0 0 0 1.0 0.0 2.0 1.0 3.0 0.0 52.0 0 0 0 0 0 c 0 0 0 10.0 1.0 82.0 81.0 0.0 0.0 15.0 0 0 0 0 0 g 0 0 0 1.0 81.0 0.0 2.0 3.0 82.0 5.0 0 0 0 0 0 t 0 0 0 72.0 2.0 0.0 0.0 78.0 2.0 12.0 0 0 0 0 0