One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2026/03/29/compare-matrices_2026-03-29.214418_xIDv3W/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2026/03/29/compare-matrices_2026-03-29.214418_xIDv3W/compare-matrices.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m4_shift2 ; 27 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
oligos_6nt_mkv4_m4_shift2 (oligos_6nt_mkv4_m4)
; oligos_6nt_mkv4_m4; m=0 (reference); ncol1=10; shift=2; ncol=12; --wtAGGGCAtw ; Alignment reference a 0 0 409 257 931 1 138 34 0 825 252 431 c 0 0 218 119 55 51 49 1 1069 88 204 198 g 0 0 181 232 17 1056 833 1036 0 36 205 204 t 0 0 304 504 109 4 92 41 43 163 451 279

TRFL5_M1316_1.02_CISBP_shift2 (TRFL5:M1316_1.02:CISBP) 0.931 0.745 6.293 0.926 0.957 2 1 2 3 4 2.400 1
; oligos_6nt_mkv4_m4 versus TRFL5_M1316_1.02_CISBP (TRFL5:M1316_1.02:CISBP); m=1/26; ncol2=8; w=0; offset=0; strand=D; shift=2; score= 2.4; --yTAGGGCa-- ; cor=0.931; Ncor=0.745; logoDP=6.293; NsEucl=0.926; NSW=0.957; rcor=2; rNcor=1; rlogoDP=2; rNsEucl=3; rNSW=4; rank_mean=2.400; match_rank=1 a 0 0 13 0 100 0 0 0 0 61 0 0 c 0 0 40 0 0 0 0 0 100 0 0 0 g 0 0 14 0 0 100 100 100 0 15 0 0 t 0 0 33 100 0 0 0 0 0 24 0 0

TRFL5_UN0839.1_JASPAR_rc_shift3 (TRFL5:UN0839.1:JASPAR_rc) 0.943 0.660 0.800 0.922 0.958 1 3 9 6 1 4.000 2
; oligos_6nt_mkv4_m4 versus TRFL5_UN0839.1_JASPAR_rc (TRFL5:UN0839.1:JASPAR_rc); m=2/26; ncol2=7; w=0; offset=1; strand=R; shift=3; score= 4; ---TAGGGCa-- ; cor=0.943; Ncor=0.660; logoDP=0.800; NsEucl=0.922; NSW=0.958; rcor=1; rNcor=3; rlogoDP=9; rNsEucl=6; rNSW=1; rank_mean=4.000; match_rank=2 a 0 0 0 0 998 0 0 0 0 614 0 0 c 0 0 0 0 0 0 0 0 998 0 0 0 g 0 0 0 0 0 998 998 998 0 154 0 0 t 0 0 0 998 0 0 0 0 0 230 0 0

PK06103.1_M1304_1.02_CISBP_shift2 (PK06103.1:M1304_1.02:CISBP) 0.902 0.722 6.487 0.908 0.932 3 2 1 7 7 4.000 3
; oligos_6nt_mkv4_m4 versus PK06103.1_M1304_1.02_CISBP (PK06103.1:M1304_1.02:CISBP); m=3/26; ncol2=8; w=0; offset=0; strand=D; shift=2; score= 4; --CTAGGGCA-- ; cor=0.902; Ncor=0.722; logoDP=6.487; NsEucl=0.908; NSW=0.932; rcor=3; rNcor=2; rlogoDP=1; rNsEucl=7; rNSW=7; rank_mean=4.000; match_rank=3 a 0 0 0 0 100 0 0 0 0 80 0 0 c 0 0 80 0 0 0 0 0 100 0 0 0 g 0 0 0 0 0 100 100 100 0 0 0 0 t 0 0 20 100 0 0 0 0 0 20 0 0

ASR3_MA1733.1_JASPAR_rc_shift1 (ASR3:MA1733.1:JASPAR_rc) 0.870 0.622 1.403 0.934 0.957 5 9 7 1 2 4.800 4
; oligos_6nt_mkv4_m4 versus ASR3_MA1733.1_JASPAR_rc (ASR3:MA1733.1:JASPAR_rc); m=4/26; ncol2=14; w=-1; offset=-1; strand=R; shift=1; score= 4.8; -ttwAGGGyAhw ; cor=0.870; Ncor=0.622; logoDP=1.403; NsEucl=0.934; NSW=0.957; rcor=5; rNcor=9; rlogoDP=7; rNsEucl=1; rNSW=2; rank_mean=4.800; match_rank=4 a 0 219 154 497 871 105 0 130 0 715 250 285 c 0 78.464 31.72 0 10.017 0 0 0 579 102 285 159 g 0 78.464 165 28.381 104 895 1000 810 0 0 120.2 83.472 t 0 624 649 474 15.025 0 0 60.1 421 184 344 472

AT2G33550.ampDAP_M0774_AthalianaCistrome_rc_shift1 (AT2G33550.ampDAP:M0774:AthalianaCistrome_rc) 0.870 0.622 1.403 0.934 0.957 6 10 8 2 3 5.800 5
; oligos_6nt_mkv4_m4 versus AT2G33550.ampDAP_M0774_AthalianaCistrome_rc (AT2G33550.ampDAP:M0774:AthalianaCistrome_rc); m=5/26; ncol2=14; w=-1; offset=-1; strand=R; shift=1; score= 5.8; -ttwAGGGyAhw ; cor=0.870; Ncor=0.622; logoDP=1.403; NsEucl=0.934; NSW=0.957; rcor=6; rNcor=10; rlogoDP=8; rNsEucl=2; rNSW=3; rank_mean=5.800; match_rank=5 a 0 131 92 298 522 63 0 78 0 428 150 171 c 0 47 19 0 6 0 0 0 347 61 171 95 g 0 47 99 17 62 536 599 485 0 0 72 50 t 0 374 389 284 9 0 0 36 252 110 206 283

ASR3_MA1733.2_JASPAR_rc_shift1 (ASR3:MA1733.2:JASPAR_rc) 0.880 0.640 0.382 0.922 0.952 4 7 15 5 5 7.200 6
; oligos_6nt_mkv4_m4 versus ASR3_MA1733.2_JASPAR_rc (ASR3:MA1733.2:JASPAR_rc); m=6/26; ncol2=9; w=-1; offset=-1; strand=R; shift=1; score= 7.2; -ttwAGGGyA-- ; cor=0.880; Ncor=0.640; logoDP=0.382; NsEucl=0.922; NSW=0.952; rcor=4; rNcor=7; rlogoDP=15; rNsEucl=5; rNSW=5; rank_mean=7.200; match_rank=6 a 0 219 154 497 871 105 0 130 0 715 0 0 c 0 78 32 0 10 0 0 0 579 102 0 0 g 0 78 165 28 104 895 1000 810 0 0 0 0 t 0 624 649 474 15 0 0 60 421 184 0 0

TRB2_MA1073.1_JASPAR_rc_shift2 (TRB2:MA1073.1:JASPAR_rc) 0.820 0.656 0.439 0.901 0.922 8 4 14 8 8 8.400 7
; oligos_6nt_mkv4_m4 versus TRB2_MA1073.1_JASPAR_rc (TRB2:MA1073.1:JASPAR_rc); m=7/26; ncol2=8; w=0; offset=0; strand=R; shift=2; score= 8.4; --yTAGGkyw-- ; cor=0.820; Ncor=0.656; logoDP=0.439; NsEucl=0.901; NSW=0.922; rcor=8; rNcor=4; rlogoDP=14; rNsEucl=8; rNSW=8; rank_mean=8.400; match_rank=7 a 0 0 74 13 994 0 0 0 40 437 0 0 c 0 0 398 7 0 0 0 0 611 69 0 0 g 0 0 74 0 6 1000 1000 628 0 126 0 0 t 0 0 454 980 0 0 0 372 349 368 0 0

ATTRB2_M1346_1.02_CISBP_rc_shift2 (ATTRB2:M1346_1.02:CISBP_rc) 0.819 0.655 0.441 0.901 0.921 9 5 13 9 9 9.000 8
; oligos_6nt_mkv4_m4 versus ATTRB2_M1346_1.02_CISBP_rc (ATTRB2:M1346_1.02:CISBP_rc); m=8/26; ncol2=8; w=0; offset=0; strand=R; shift=2; score= 9; --yTAGGkyw-- ; cor=0.819; Ncor=0.655; logoDP=0.441; NsEucl=0.901; NSW=0.921; rcor=9; rNcor=5; rlogoDP=13; rNsEucl=9; rNSW=9; rank_mean=9.000; match_rank=8 a 0 0 7 1 99 0 0 0 4 43 0 0 c 0 0 40 1 0 0 0 0 61 7 0 0 g 0 0 7 0 1 100 100 63 0 13 0 0 t 0 0 46 98 0 0 0 37 35 37 0 0

AT2G33550.DAP_M0787_AthalianaCistrome_rc_shift1 (AT2G33550.DAP:M0787:AthalianaCistrome_rc) 0.829 0.460 0.103 0.923 0.941 7 21 26 4 6 12.800 9
; oligos_6nt_mkv4_m4 versus AT2G33550.DAP_M0787_AthalianaCistrome_rc (AT2G33550.DAP:M0787:AthalianaCistrome_rc); m=9/26; ncol2=18; w=-1; offset=-1; strand=R; shift=1; score= 12.8; -tTwAGGGywww ; cor=0.829; Ncor=0.460; logoDP=0.103; NsEucl=0.923; NSW=0.941; rcor=7; rNcor=21; rlogoDP=26; rNsEucl=4; rNSW=6; rank_mean=12.800; match_rank=9 a 0 78 18 160 321 15 0 39 23 192 88 141 c 0 25 26 0 2 0 0 0 147 54 76 34 g 0 25 26 7 10 323 338 285 4 7 47 44 t 0 210 268 171 5 0 0 14 164 85 127 119

estExt_fgenesh1_pg.C_Chr_13.00010057_M1396_1.02_CISBP_rc_shift1 (estExt_fgenesh1_pg.C_Chr_13.00010057:M1396_1.02:CISBP_rc) 0.765 0.556 0.272 0.895 0.912 12 14 18 14 10 13.600 10
; oligos_6nt_mkv4_m4 versus estExt_fgenesh1_pg.C_Chr_13.00010057_M1396_1.02_CISBP_rc (estExt_fgenesh1_pg.C_Chr_13.00010057:M1396_1.02:CISBP_rc); m=10/26; ncol2=9; w=-1; offset=-1; strand=R; shift=1; score= 13.6; -dyTAGGkyw-- ; cor=0.765; Ncor=0.556; logoDP=0.272; NsEucl=0.895; NSW=0.912; rcor=12; rNcor=14; rlogoDP=18; rNsEucl=14; rNSW=10; rank_mean=13.600; match_rank=10 a 0 28 16 13 94 0 1 2 11 31 0 0 c 0 21 31 6 0 1 0 1 39 14 0 0 g 0 25 17 7 6 98 98 52 2 20 0 0 t 0 26 36 74 0 1 1 45 48 35 0 0

0100010593_M1389_1.02_CISBP_rc_shift1 (0100010593:M1389_1.02:CISBP_rc) 0.728 0.596 0.354 0.900 0.911 20 11 16 11 11 13.800 11
; oligos_6nt_mkv4_m4 versus 0100010593_M1389_1.02_CISBP_rc (0100010593:M1389_1.02:CISBP_rc); m=11/26; ncol2=10; w=-1; offset=-1; strand=R; shift=1; score= 13.8; -wytAGGKTww- ; cor=0.728; Ncor=0.596; logoDP=0.354; NsEucl=0.900; NSW=0.911; rcor=20; rNcor=11; rlogoDP=16; rNsEucl=11; rNSW=11; rank_mean=13.800; match_rank=11 a 0 29 21 14 92 3 5 3 7 48 31 0 c 0 19 27 16 1 4 3 1 15 5 20 0 g 0 24 18 11 5 85 87 69 0 6 10 0 t 0 28 34 59 2 8 5 27 78 41 39 0

TBP3_MA1355.1_JASPAR_rc_shift0 (TBP3:MA1355.1:JASPAR_rc) 0.751 0.500 2.056 0.896 0.892 15 20 4 13 18 14.000 12
; oligos_6nt_mkv4_m4 versus TBP3_MA1355.1_JASPAR_rc (TBP3:MA1355.1:JASPAR_rc); m=12/26; ncol2=15; w=-2; offset=-2; strand=R; shift=0; score= 14; awTTAGGGywwa ; cor=0.751; Ncor=0.500; logoDP=2.056; NsEucl=0.896; NSW=0.892; rcor=15; rNcor=20; rlogoDP=4; rNsEucl=13; rNSW=18; rank_mean=14.000; match_rank=12 a 357 298 2 0 598 0 0 0 0 195 180 300 c 28 11 91 0 0 0 0 0 245 1 90 93 g 121 92 0 0 0 598 598 553 0 3 8 85 t 92 197 505 598 0 0 0 45 353 399 320 120

estExt_fgenesh1_pg.C_Chr_03.00010061_M1394_1.02_CISBP_rc_shift2 (estExt_fgenesh1_pg.C_Chr_03.00010061:M1394_1.02:CISBP_rc) 0.701 0.631 0.508 0.899 0.907 26 8 12 12 12 14.000 13
; oligos_6nt_mkv4_m4 versus estExt_fgenesh1_pg.C_Chr_03.00010061_M1394_1.02_CISBP_rc (estExt_fgenesh1_pg.C_Chr_03.00010061:M1394_1.02:CISBP_rc); m=13/26; ncol2=9; w=0; offset=0; strand=R; shift=2; score= 14; --ytRGGkyww- ; cor=0.701; Ncor=0.631; logoDP=0.508; NsEucl=0.899; NSW=0.907; rcor=26; rNcor=8; rlogoDP=12; rNsEucl=12; rNSW=12; rank_mean=14.000; match_rank=13 a 0 0 19 17 68 0 0 2 16 37 31 0 c 0 0 33 14 3 4 0 0 25 12 17 0 g 0 0 21 18 29 88 97 51 3 7 22 0 t 0 0 27 51 0 8 3 47 56 44 30 0

OsTRBF3_MA2404.1_JASPAR_rc_shift3 (OsTRBF3:MA2404.1:JASPAR_rc) 0.776 0.543 0.583 0.881 0.902 10 15 10 20 16 14.200 14
; oligos_6nt_mkv4_m4 versus OsTRBF3_MA2404.1_JASPAR_rc (OsTRBF3:MA2404.1:JASPAR_rc); m=14/26; ncol2=7; w=0; offset=1; strand=R; shift=3; score= 14.2; ---TAGGkyw-- ; cor=0.776; Ncor=0.543; logoDP=0.583; NsEucl=0.881; NSW=0.902; rcor=10; rNcor=15; rlogoDP=10; rNsEucl=20; rNSW=16; rank_mean=14.200; match_rank=14 a 0 0 0 53 988 3 11 14 71 411 0 0 c 0 0 0 82 0 26 1 6 369 59 0 0 g 0 0 0 31 0 928 962 562 24 113 0 0 t 0 0 0 831 10 41 25 416 534 415 0 0

MYBR101_SMH1_B73_1_m1_EEAD0453_EEADannot_rc_shift2 (MYBR101_SMH1_B73_1_m1:EEAD0453:EEADannot_rc) 0.711 0.647 1.977 0.892 0.884 24 6 5 15 21 14.200 15
; oligos_6nt_mkv4_m4 versus MYBR101_SMH1_B73_1_m1_EEAD0453_EEADannot_rc (MYBR101_SMH1_B73_1_m1:EEAD0453:EEADannot_rc); m=15/26; ncol2=11; w=0; offset=0; strand=R; shift=2; score= 14.2; --yTAGGGyWwr ; cor=0.711; Ncor=0.647; logoDP=1.977; NsEucl=0.892; NSW=0.884; rcor=24; rNcor=6; rlogoDP=5; rNsEucl=15; rNSW=21; rank_mean=14.200; match_rank=15 a 0 0 1 1 100 0 0 0 0 27 55 28 c 0 0 34 4 0 0 0 0 35 1 13 10 g 0 0 4 2 0 100 100 90 0 2 6 54 t 0 0 61 93 0 0 0 10 65 70 26 8

P0510F09.23_MA1030.2_JASPAR_rc_shift3 (P0510F09.23:MA1030.2:JASPAR_rc) 0.776 0.543 0.581 0.881 0.902 11 16 11 19 15 14.400 16
; oligos_6nt_mkv4_m4 versus P0510F09.23_MA1030.2_JASPAR_rc (P0510F09.23:MA1030.2:JASPAR_rc); m=16/26; ncol2=7; w=0; offset=1; strand=R; shift=3; score= 14.4; ---TAGGkyw-- ; cor=0.776; Ncor=0.543; logoDP=0.581; NsEucl=0.881; NSW=0.902; rcor=11; rNcor=16; rlogoDP=11; rNsEucl=19; rNSW=15; rank_mean=14.400; match_rank=16 a 0 0 0 54 989 4 11 15 72 411 0 0 c 0 0 0 83 0 27 1 7 369 60 0 0 g 0 0 0 32 1 928 962 562 24 113 0 0 t 0 0 0 832 10 41 26 416 535 416 0 0

MYBR101_SMH1_Mo17_1_EEAD0454_EEADannot_rc_shift2 (MYBR101_SMH1_Mo17_1:EEAD0454:EEADannot_rc) 0.749 0.576 0.246 0.901 0.901 16 12 19 10 17 14.800 17
; oligos_6nt_mkv4_m4 versus MYBR101_SMH1_Mo17_1_EEAD0454_EEADannot_rc (MYBR101_SMH1_Mo17_1:EEAD0454:EEADannot_rc); m=17/26; ncol2=13; w=0; offset=0; strand=R; shift=2; score= 14.8; --yTAGGGywar ; cor=0.749; Ncor=0.576; logoDP=0.246; NsEucl=0.901; NSW=0.901; rcor=16; rNcor=12; rlogoDP=19; rNsEucl=10; rNSW=17; rank_mean=14.800; match_rank=17 a 0 0 1 3 98 0 0 0 0 28 51 30 c 0 0 40 6 0 0 0 1 46 1 19 4 g 0 0 6 2 2 100 100 92 0 4 6 58 t 0 0 53 89 0 0 0 7 54 67 24 8

MYB1-like_MA1030.1_JASPAR_rc_shift0 (MYB1-like:MA1030.1:JASPAR_rc) 0.760 0.507 0.234 0.892 0.907 13 17 21 16 13 16.000 18
; oligos_6nt_mkv4_m4 versus MYB1-like_MA1030.1_JASPAR_rc (MYB1-like:MA1030.1:JASPAR_rc); m=18/26; ncol2=10; w=-2; offset=-2; strand=R; shift=0; score= 16; rdyTAGGkyw-- ; cor=0.760; Ncor=0.507; logoDP=0.234; NsEucl=0.892; NSW=0.907; rcor=13; rNcor=17; rlogoDP=21; rNsEucl=16; rNSW=13; rank_mean=16.000; match_rank=18 a 283 250 106 54 989 4 11 15 72 411 0 0 c 220 226 389 83 0 27 1 7 369 60 0 0 g 256 258 132 32 1 928 962 562 24 113 0 0 t 241 266 373 832 10 41 26 416 535 416 0 0

LOC_Os01g51154_M1361_1.02_CISBP_rc_shift0 (LOC_Os01g51154:M1361_1.02:CISBP_rc) 0.759 0.506 0.235 0.891 0.906 14 18 20 17 14 16.600 19
; oligos_6nt_mkv4_m4 versus LOC_Os01g51154_M1361_1.02_CISBP_rc (LOC_Os01g51154:M1361_1.02:CISBP_rc); m=19/26; ncol2=10; w=-2; offset=-2; strand=R; shift=0; score= 16.6; rdyTAGGkyw-- ; cor=0.759; Ncor=0.506; logoDP=0.235; NsEucl=0.891; NSW=0.906; rcor=14; rNcor=18; rlogoDP=20; rNsEucl=17; rNSW=14; rank_mean=16.600; match_rank=19 a 28 25 11 5 99 0 1 1 7 41 0 0 c 22 23 39 8 0 3 0 1 37 6 0 0 g 26 25 13 3 0 93 96 56 2 11 0 0 t 24 27 37 84 1 4 3 42 54 42 0 0

TRB2_MA1355.2_JASPAR_rc_shift0 (TRB2:MA1355.2:JASPAR_rc) 0.748 0.561 0.331 0.885 0.881 17 13 17 18 22 17.400 20
; oligos_6nt_mkv4_m4 versus TRB2_MA1355.2_JASPAR_rc (TRB2:MA1355.2:JASPAR_rc); m=20/26; ncol2=11; w=-2; offset=-2; strand=R; shift=0; score= 17.4; awTTAGGGyww- ; cor=0.748; Ncor=0.561; logoDP=0.331; NsEucl=0.885; NSW=0.881; rcor=17; rNcor=13; rlogoDP=17; rNsEucl=18; rNSW=22; rank_mean=17.400; match_rank=20 a 357 298 2 0 598 0 0 0 0 195 180 0 c 28 11 91 0 0 0 0 0 245 1 90 0 g 121 92 0 0 0 598 598 553 0 3 8 0 t 92 197 505 598 0 0 0 45 353 399 320 0

B3_6j9c_D_3D-footprint_shift6 (B3:6j9c_D:3D-footprint) 0.747 0.448 3.668 0.858 0.879 19 23 3 23 23 18.200 21
; oligos_6nt_mkv4_m4 versus B3_6j9c_D_3D-footprint (B3:6j9c_D:3D-footprint); m=21/26; ncol2=6; w=0; offset=4; strand=D; shift=6; score= 18.2; ------tGCATG ; cor=0.747; Ncor=0.448; logoDP=3.668; NsEucl=0.858; NSW=0.879; rcor=19; rNcor=23; rlogoDP=3; rNsEucl=23; rNSW=23; rank_mean=18.200; match_rank=21 a 0 0 0 0 0 0 16 0 0 96 16 16 c 0 0 0 0 0 0 16 0 96 0 0 0 g 0 0 0 0 0 0 16 96 0 0 0 80 t 0 0 0 0 0 0 48 0 0 0 80 0

ONAC127_UN0428.2_JASPAR_rc_shift5 (ONAC127:UN0428.2:JASPAR_rc) 0.719 0.503 1.710 0.849 0.840 21 19 6 26 26 19.600 22
; oligos_6nt_mkv4_m4 versus ONAC127_UN0428.2_JASPAR_rc (ONAC127:UN0428.2:JASPAR_rc); m=22/26; ncol2=7; w=0; offset=3; strand=R; shift=5; score= 19.6; -----gGGCAGC ; cor=0.719; Ncor=0.503; logoDP=1.710; NsEucl=0.849; NSW=0.840; rcor=21; rNcor=19; rlogoDP=6; rNsEucl=26; rNSW=26; rank_mean=19.600; match_rank=22 a 0 0 0 0 0 2 0 0 0 20 0 0 c 0 0 0 0 0 4 0 0 20 0 0 20 g 0 0 0 0 0 11 20 20 0 0 20 0 t 0 0 0 0 0 3 0 0 0 0 0 0

B3_6j9a_A_3D-footprint_rc_shift6 (B3:6j9a_A:3D-footprint_rc) 0.718 0.431 0.205 0.861 0.884 22 24 22 22 20 22.000 23
; oligos_6nt_mkv4_m4 versus B3_6j9a_A_3D-footprint_rc (B3:6j9a_A:3D-footprint_rc); m=23/26; ncol2=6; w=0; offset=4; strand=R; shift=6; score= 22; ------tGCATG ; cor=0.718; Ncor=0.431; logoDP=0.205; NsEucl=0.861; NSW=0.884; rcor=22; rNcor=24; rlogoDP=22; rNsEucl=22; rNSW=20; rank_mean=22.000; match_rank=23 a 0 0 0 0 0 0 18 4 0 74 5 4 c 0 0 0 0 0 0 18 2 96 7 3 4 g 0 0 0 0 0 0 18 88 0 7 3 81 t 0 0 0 0 0 0 42 2 0 8 85 7

B3_5yzy_C_3D-footprint_rc_shift6 (B3:5yzy_C:3D-footprint_rc) 0.747 0.448 0.181 0.857 0.877 18 22 25 24 24 22.600 24
; oligos_6nt_mkv4_m4 versus B3_5yzy_C_3D-footprint_rc (B3:5yzy_C:3D-footprint_rc); m=24/26; ncol2=6; w=0; offset=4; strand=R; shift=6; score= 22.6; ------tGCATg ; cor=0.747; Ncor=0.448; logoDP=0.181; NsEucl=0.857; NSW=0.877; rcor=18; rNcor=22; rlogoDP=25; rNsEucl=24; rNSW=24; rank_mean=22.600; match_rank=24 a 0 0 0 0 0 0 13 0 0 96 0 13 c 0 0 0 0 0 0 13 0 96 0 0 13 g 0 0 0 0 0 0 13 96 0 0 0 57 t 0 0 0 0 0 0 57 0 0 0 96 13

B3_5yzz_C_3D-footprint_rc_shift6 (B3:5yzz_C:3D-footprint_rc) 0.704 0.423 0.205 0.864 0.888 25 26 23 21 19 22.800 25
; oligos_6nt_mkv4_m4 versus B3_5yzz_C_3D-footprint_rc (B3:5yzz_C:3D-footprint_rc); m=25/26; ncol2=6; w=0; offset=4; strand=R; shift=6; score= 22.8; ------tGCATG ; cor=0.704; Ncor=0.423; logoDP=0.205; NsEucl=0.864; NSW=0.888; rcor=25; rNcor=26; rlogoDP=23; rNsEucl=21; rNSW=19; rank_mean=22.800; match_rank=25 a 0 0 0 0 0 0 14 7 0 75 3 11 c 0 0 0 0 0 0 16 7 96 7 3 9 g 0 0 0 0 0 0 14 75 0 7 3 67 t 0 0 0 0 0 0 52 7 0 7 87 9

B3_6j9b_A_3D-footprint_rc_shift6 (B3:6j9b_A:3D-footprint_rc) 0.714 0.428 0.181 0.852 0.869 23 25 24 25 25 24.400 26
; oligos_6nt_mkv4_m4 versus B3_6j9b_A_3D-footprint_rc (B3:6j9b_A:3D-footprint_rc); m=26/26; ncol2=6; w=0; offset=4; strand=R; shift=6; score= 24.4; ------tGCATg ; cor=0.714; Ncor=0.428; logoDP=0.181; NsEucl=0.852; NSW=0.869; rcor=23; rNcor=25; rlogoDP=24; rNsEucl=25; rNSW=25; rank_mean=24.400; match_rank=26 a 0 0 0 0 0 0 12 0 0 96 0 12 c 0 0 0 0 0 0 12 0 84 0 0 12 g 0 0 0 0 0 0 12 96 12 0 0 60 t 0 0 0 0 0 0 60 0 0 0 96 12

Matrix name	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
oligos_6nt_mkv4_m4_shift2 (oligos_6nt_mkv4_m4)													; oligos_6nt_mkv4_m4; m=0 (reference); ncol1=10; shift=2; ncol=12; --wtAGGGCAtw ; Alignment reference a 0 0 409 257 931 1 138 34 0 825 252 431 c 0 0 218 119 55 51 49 1 1069 88 204 198 g 0 0 181 232 17 1056 833 1036 0 36 205 204 t 0 0 304 504 109 4 92 41 43 163 451 279
TRFL5_M1316_1.02_CISBP_shift2 (TRFL5:M1316_1.02:CISBP)	0.931	0.745	6.293	0.926	0.957	2	1	2	3	4	2.400	1	; oligos_6nt_mkv4_m4 versus TRFL5_M1316_1.02_CISBP (TRFL5:M1316_1.02:CISBP); m=1/26; ncol2=8; w=0; offset=0; strand=D; shift=2; score= 2.4; --yTAGGGCa-- ; cor=0.931; Ncor=0.745; logoDP=6.293; NsEucl=0.926; NSW=0.957; rcor=2; rNcor=1; rlogoDP=2; rNsEucl=3; rNSW=4; rank_mean=2.400; match_rank=1 a 0 0 13 0 100 0 0 0 0 61 0 0 c 0 0 40 0 0 0 0 0 100 0 0 0 g 0 0 14 0 0 100 100 100 0 15 0 0 t 0 0 33 100 0 0 0 0 0 24 0 0
TRFL5_UN0839.1_JASPAR_rc_shift3 (TRFL5:UN0839.1:JASPAR_rc)	0.943	0.660	0.800	0.922	0.958	1	3	9	6	1	4.000	2	; oligos_6nt_mkv4_m4 versus TRFL5_UN0839.1_JASPAR_rc (TRFL5:UN0839.1:JASPAR_rc); m=2/26; ncol2=7; w=0; offset=1; strand=R; shift=3; score= 4; ---TAGGGCa-- ; cor=0.943; Ncor=0.660; logoDP=0.800; NsEucl=0.922; NSW=0.958; rcor=1; rNcor=3; rlogoDP=9; rNsEucl=6; rNSW=1; rank_mean=4.000; match_rank=2 a 0 0 0 0 998 0 0 0 0 614 0 0 c 0 0 0 0 0 0 0 0 998 0 0 0 g 0 0 0 0 0 998 998 998 0 154 0 0 t 0 0 0 998 0 0 0 0 0 230 0 0
PK06103.1_M1304_1.02_CISBP_shift2 (PK06103.1:M1304_1.02:CISBP)	0.902	0.722	6.487	0.908	0.932	3	2	1	7	7	4.000	3	; oligos_6nt_mkv4_m4 versus PK06103.1_M1304_1.02_CISBP (PK06103.1:M1304_1.02:CISBP); m=3/26; ncol2=8; w=0; offset=0; strand=D; shift=2; score= 4; --CTAGGGCA-- ; cor=0.902; Ncor=0.722; logoDP=6.487; NsEucl=0.908; NSW=0.932; rcor=3; rNcor=2; rlogoDP=1; rNsEucl=7; rNSW=7; rank_mean=4.000; match_rank=3 a 0 0 0 0 100 0 0 0 0 80 0 0 c 0 0 80 0 0 0 0 0 100 0 0 0 g 0 0 0 0 0 100 100 100 0 0 0 0 t 0 0 20 100 0 0 0 0 0 20 0 0
ASR3_MA1733.1_JASPAR_rc_shift1 (ASR3:MA1733.1:JASPAR_rc)	0.870	0.622	1.403	0.934	0.957	5	9	7	1	2	4.800	4	; oligos_6nt_mkv4_m4 versus ASR3_MA1733.1_JASPAR_rc (ASR3:MA1733.1:JASPAR_rc); m=4/26; ncol2=14; w=-1; offset=-1; strand=R; shift=1; score= 4.8; -ttwAGGGyAhw ; cor=0.870; Ncor=0.622; logoDP=1.403; NsEucl=0.934; NSW=0.957; rcor=5; rNcor=9; rlogoDP=7; rNsEucl=1; rNSW=2; rank_mean=4.800; match_rank=4 a 0 219 154 497 871 105 0 130 0 715 250 285 c 0 78.464 31.72 0 10.017 0 0 0 579 102 285 159 g 0 78.464 165 28.381 104 895 1000 810 0 0 120.2 83.472 t 0 624 649 474 15.025 0 0 60.1 421 184 344 472
AT2G33550.ampDAP_M0774_AthalianaCistrome_rc_shift1 (AT2G33550.ampDAP:M0774:AthalianaCistrome_rc)	0.870	0.622	1.403	0.934	0.957	6	10	8	2	3	5.800	5	; oligos_6nt_mkv4_m4 versus AT2G33550.ampDAP_M0774_AthalianaCistrome_rc (AT2G33550.ampDAP:M0774:AthalianaCistrome_rc); m=5/26; ncol2=14; w=-1; offset=-1; strand=R; shift=1; score= 5.8; -ttwAGGGyAhw ; cor=0.870; Ncor=0.622; logoDP=1.403; NsEucl=0.934; NSW=0.957; rcor=6; rNcor=10; rlogoDP=8; rNsEucl=2; rNSW=3; rank_mean=5.800; match_rank=5 a 0 131 92 298 522 63 0 78 0 428 150 171 c 0 47 19 0 6 0 0 0 347 61 171 95 g 0 47 99 17 62 536 599 485 0 0 72 50 t 0 374 389 284 9 0 0 36 252 110 206 283
ASR3_MA1733.2_JASPAR_rc_shift1 (ASR3:MA1733.2:JASPAR_rc)	0.880	0.640	0.382	0.922	0.952	4	7	15	5	5	7.200	6	; oligos_6nt_mkv4_m4 versus ASR3_MA1733.2_JASPAR_rc (ASR3:MA1733.2:JASPAR_rc); m=6/26; ncol2=9; w=-1; offset=-1; strand=R; shift=1; score= 7.2; -ttwAGGGyA-- ; cor=0.880; Ncor=0.640; logoDP=0.382; NsEucl=0.922; NSW=0.952; rcor=4; rNcor=7; rlogoDP=15; rNsEucl=5; rNSW=5; rank_mean=7.200; match_rank=6 a 0 219 154 497 871 105 0 130 0 715 0 0 c 0 78 32 0 10 0 0 0 579 102 0 0 g 0 78 165 28 104 895 1000 810 0 0 0 0 t 0 624 649 474 15 0 0 60 421 184 0 0
TRB2_MA1073.1_JASPAR_rc_shift2 (TRB2:MA1073.1:JASPAR_rc)	0.820	0.656	0.439	0.901	0.922	8	4	14	8	8	8.400	7	; oligos_6nt_mkv4_m4 versus TRB2_MA1073.1_JASPAR_rc (TRB2:MA1073.1:JASPAR_rc); m=7/26; ncol2=8; w=0; offset=0; strand=R; shift=2; score= 8.4; --yTAGGkyw-- ; cor=0.820; Ncor=0.656; logoDP=0.439; NsEucl=0.901; NSW=0.922; rcor=8; rNcor=4; rlogoDP=14; rNsEucl=8; rNSW=8; rank_mean=8.400; match_rank=7 a 0 0 74 13 994 0 0 0 40 437 0 0 c 0 0 398 7 0 0 0 0 611 69 0 0 g 0 0 74 0 6 1000 1000 628 0 126 0 0 t 0 0 454 980 0 0 0 372 349 368 0 0
ATTRB2_M1346_1.02_CISBP_rc_shift2 (ATTRB2:M1346_1.02:CISBP_rc)	0.819	0.655	0.441	0.901	0.921	9	5	13	9	9	9.000	8	; oligos_6nt_mkv4_m4 versus ATTRB2_M1346_1.02_CISBP_rc (ATTRB2:M1346_1.02:CISBP_rc); m=8/26; ncol2=8; w=0; offset=0; strand=R; shift=2; score= 9; --yTAGGkyw-- ; cor=0.819; Ncor=0.655; logoDP=0.441; NsEucl=0.901; NSW=0.921; rcor=9; rNcor=5; rlogoDP=13; rNsEucl=9; rNSW=9; rank_mean=9.000; match_rank=8 a 0 0 7 1 99 0 0 0 4 43 0 0 c 0 0 40 1 0 0 0 0 61 7 0 0 g 0 0 7 0 1 100 100 63 0 13 0 0 t 0 0 46 98 0 0 0 37 35 37 0 0
AT2G33550.DAP_M0787_AthalianaCistrome_rc_shift1 (AT2G33550.DAP:M0787:AthalianaCistrome_rc)	0.829	0.460	0.103	0.923	0.941	7	21	26	4	6	12.800	9	; oligos_6nt_mkv4_m4 versus AT2G33550.DAP_M0787_AthalianaCistrome_rc (AT2G33550.DAP:M0787:AthalianaCistrome_rc); m=9/26; ncol2=18; w=-1; offset=-1; strand=R; shift=1; score= 12.8; -tTwAGGGywww ; cor=0.829; Ncor=0.460; logoDP=0.103; NsEucl=0.923; NSW=0.941; rcor=7; rNcor=21; rlogoDP=26; rNsEucl=4; rNSW=6; rank_mean=12.800; match_rank=9 a 0 78 18 160 321 15 0 39 23 192 88 141 c 0 25 26 0 2 0 0 0 147 54 76 34 g 0 25 26 7 10 323 338 285 4 7 47 44 t 0 210 268 171 5 0 0 14 164 85 127 119
estExt_fgenesh1_pg.C_Chr_13.00010057_M1396_1.02_CISBP_rc_shift1 (estExt_fgenesh1_pg.C_Chr_13.00010057:M1396_1.02:CISBP_rc)	0.765	0.556	0.272	0.895	0.912	12	14	18	14	10	13.600	10	; oligos_6nt_mkv4_m4 versus estExt_fgenesh1_pg.C_Chr_13.00010057_M1396_1.02_CISBP_rc (estExt_fgenesh1_pg.C_Chr_13.00010057:M1396_1.02:CISBP_rc); m=10/26; ncol2=9; w=-1; offset=-1; strand=R; shift=1; score= 13.6; -dyTAGGkyw-- ; cor=0.765; Ncor=0.556; logoDP=0.272; NsEucl=0.895; NSW=0.912; rcor=12; rNcor=14; rlogoDP=18; rNsEucl=14; rNSW=10; rank_mean=13.600; match_rank=10 a 0 28 16 13 94 0 1 2 11 31 0 0 c 0 21 31 6 0 1 0 1 39 14 0 0 g 0 25 17 7 6 98 98 52 2 20 0 0 t 0 26 36 74 0 1 1 45 48 35 0 0
0100010593_M1389_1.02_CISBP_rc_shift1 (0100010593:M1389_1.02:CISBP_rc)	0.728	0.596	0.354	0.900	0.911	20	11	16	11	11	13.800	11	; oligos_6nt_mkv4_m4 versus 0100010593_M1389_1.02_CISBP_rc (0100010593:M1389_1.02:CISBP_rc); m=11/26; ncol2=10; w=-1; offset=-1; strand=R; shift=1; score= 13.8; -wytAGGKTww- ; cor=0.728; Ncor=0.596; logoDP=0.354; NsEucl=0.900; NSW=0.911; rcor=20; rNcor=11; rlogoDP=16; rNsEucl=11; rNSW=11; rank_mean=13.800; match_rank=11 a 0 29 21 14 92 3 5 3 7 48 31 0 c 0 19 27 16 1 4 3 1 15 5 20 0 g 0 24 18 11 5 85 87 69 0 6 10 0 t 0 28 34 59 2 8 5 27 78 41 39 0
TBP3_MA1355.1_JASPAR_rc_shift0 (TBP3:MA1355.1:JASPAR_rc)	0.751	0.500	2.056	0.896	0.892	15	20	4	13	18	14.000	12	; oligos_6nt_mkv4_m4 versus TBP3_MA1355.1_JASPAR_rc (TBP3:MA1355.1:JASPAR_rc); m=12/26; ncol2=15; w=-2; offset=-2; strand=R; shift=0; score= 14; awTTAGGGywwa ; cor=0.751; Ncor=0.500; logoDP=2.056; NsEucl=0.896; NSW=0.892; rcor=15; rNcor=20; rlogoDP=4; rNsEucl=13; rNSW=18; rank_mean=14.000; match_rank=12 a 357 298 2 0 598 0 0 0 0 195 180 300 c 28 11 91 0 0 0 0 0 245 1 90 93 g 121 92 0 0 0 598 598 553 0 3 8 85 t 92 197 505 598 0 0 0 45 353 399 320 120
estExt_fgenesh1_pg.C_Chr_03.00010061_M1394_1.02_CISBP_rc_shift2 (estExt_fgenesh1_pg.C_Chr_03.00010061:M1394_1.02:CISBP_rc)	0.701	0.631	0.508	0.899	0.907	26	8	12	12	12	14.000	13	; oligos_6nt_mkv4_m4 versus estExt_fgenesh1_pg.C_Chr_03.00010061_M1394_1.02_CISBP_rc (estExt_fgenesh1_pg.C_Chr_03.00010061:M1394_1.02:CISBP_rc); m=13/26; ncol2=9; w=0; offset=0; strand=R; shift=2; score= 14; --ytRGGkyww- ; cor=0.701; Ncor=0.631; logoDP=0.508; NsEucl=0.899; NSW=0.907; rcor=26; rNcor=8; rlogoDP=12; rNsEucl=12; rNSW=12; rank_mean=14.000; match_rank=13 a 0 0 19 17 68 0 0 2 16 37 31 0 c 0 0 33 14 3 4 0 0 25 12 17 0 g 0 0 21 18 29 88 97 51 3 7 22 0 t 0 0 27 51 0 8 3 47 56 44 30 0
OsTRBF3_MA2404.1_JASPAR_rc_shift3 (OsTRBF3:MA2404.1:JASPAR_rc)	0.776	0.543	0.583	0.881	0.902	10	15	10	20	16	14.200	14	; oligos_6nt_mkv4_m4 versus OsTRBF3_MA2404.1_JASPAR_rc (OsTRBF3:MA2404.1:JASPAR_rc); m=14/26; ncol2=7; w=0; offset=1; strand=R; shift=3; score= 14.2; ---TAGGkyw-- ; cor=0.776; Ncor=0.543; logoDP=0.583; NsEucl=0.881; NSW=0.902; rcor=10; rNcor=15; rlogoDP=10; rNsEucl=20; rNSW=16; rank_mean=14.200; match_rank=14 a 0 0 0 53 988 3 11 14 71 411 0 0 c 0 0 0 82 0 26 1 6 369 59 0 0 g 0 0 0 31 0 928 962 562 24 113 0 0 t 0 0 0 831 10 41 25 416 534 415 0 0
MYBR101_SMH1_B73_1_m1_EEAD0453_EEADannot_rc_shift2 (MYBR101_SMH1_B73_1_m1:EEAD0453:EEADannot_rc)	0.711	0.647	1.977	0.892	0.884	24	6	5	15	21	14.200	15	; oligos_6nt_mkv4_m4 versus MYBR101_SMH1_B73_1_m1_EEAD0453_EEADannot_rc (MYBR101_SMH1_B73_1_m1:EEAD0453:EEADannot_rc); m=15/26; ncol2=11; w=0; offset=0; strand=R; shift=2; score= 14.2; --yTAGGGyWwr ; cor=0.711; Ncor=0.647; logoDP=1.977; NsEucl=0.892; NSW=0.884; rcor=24; rNcor=6; rlogoDP=5; rNsEucl=15; rNSW=21; rank_mean=14.200; match_rank=15 a 0 0 1 1 100 0 0 0 0 27 55 28 c 0 0 34 4 0 0 0 0 35 1 13 10 g 0 0 4 2 0 100 100 90 0 2 6 54 t 0 0 61 93 0 0 0 10 65 70 26 8
P0510F09.23_MA1030.2_JASPAR_rc_shift3 (P0510F09.23:MA1030.2:JASPAR_rc)	0.776	0.543	0.581	0.881	0.902	11	16	11	19	15	14.400	16	; oligos_6nt_mkv4_m4 versus P0510F09.23_MA1030.2_JASPAR_rc (P0510F09.23:MA1030.2:JASPAR_rc); m=16/26; ncol2=7; w=0; offset=1; strand=R; shift=3; score= 14.4; ---TAGGkyw-- ; cor=0.776; Ncor=0.543; logoDP=0.581; NsEucl=0.881; NSW=0.902; rcor=11; rNcor=16; rlogoDP=11; rNsEucl=19; rNSW=15; rank_mean=14.400; match_rank=16 a 0 0 0 54 989 4 11 15 72 411 0 0 c 0 0 0 83 0 27 1 7 369 60 0 0 g 0 0 0 32 1 928 962 562 24 113 0 0 t 0 0 0 832 10 41 26 416 535 416 0 0
MYBR101_SMH1_Mo17_1_EEAD0454_EEADannot_rc_shift2 (MYBR101_SMH1_Mo17_1:EEAD0454:EEADannot_rc)	0.749	0.576	0.246	0.901	0.901	16	12	19	10	17	14.800	17	; oligos_6nt_mkv4_m4 versus MYBR101_SMH1_Mo17_1_EEAD0454_EEADannot_rc (MYBR101_SMH1_Mo17_1:EEAD0454:EEADannot_rc); m=17/26; ncol2=13; w=0; offset=0; strand=R; shift=2; score= 14.8; --yTAGGGywar ; cor=0.749; Ncor=0.576; logoDP=0.246; NsEucl=0.901; NSW=0.901; rcor=16; rNcor=12; rlogoDP=19; rNsEucl=10; rNSW=17; rank_mean=14.800; match_rank=17 a 0 0 1 3 98 0 0 0 0 28 51 30 c 0 0 40 6 0 0 0 1 46 1 19 4 g 0 0 6 2 2 100 100 92 0 4 6 58 t 0 0 53 89 0 0 0 7 54 67 24 8
MYB1-like_MA1030.1_JASPAR_rc_shift0 (MYB1-like:MA1030.1:JASPAR_rc)	0.760	0.507	0.234	0.892	0.907	13	17	21	16	13	16.000	18	; oligos_6nt_mkv4_m4 versus MYB1-like_MA1030.1_JASPAR_rc (MYB1-like:MA1030.1:JASPAR_rc); m=18/26; ncol2=10; w=-2; offset=-2; strand=R; shift=0; score= 16; rdyTAGGkyw-- ; cor=0.760; Ncor=0.507; logoDP=0.234; NsEucl=0.892; NSW=0.907; rcor=13; rNcor=17; rlogoDP=21; rNsEucl=16; rNSW=13; rank_mean=16.000; match_rank=18 a 283 250 106 54 989 4 11 15 72 411 0 0 c 220 226 389 83 0 27 1 7 369 60 0 0 g 256 258 132 32 1 928 962 562 24 113 0 0 t 241 266 373 832 10 41 26 416 535 416 0 0
LOC_Os01g51154_M1361_1.02_CISBP_rc_shift0 (LOC_Os01g51154:M1361_1.02:CISBP_rc)	0.759	0.506	0.235	0.891	0.906	14	18	20	17	14	16.600	19	; oligos_6nt_mkv4_m4 versus LOC_Os01g51154_M1361_1.02_CISBP_rc (LOC_Os01g51154:M1361_1.02:CISBP_rc); m=19/26; ncol2=10; w=-2; offset=-2; strand=R; shift=0; score= 16.6; rdyTAGGkyw-- ; cor=0.759; Ncor=0.506; logoDP=0.235; NsEucl=0.891; NSW=0.906; rcor=14; rNcor=18; rlogoDP=20; rNsEucl=17; rNSW=14; rank_mean=16.600; match_rank=19 a 28 25 11 5 99 0 1 1 7 41 0 0 c 22 23 39 8 0 3 0 1 37 6 0 0 g 26 25 13 3 0 93 96 56 2 11 0 0 t 24 27 37 84 1 4 3 42 54 42 0 0
TRB2_MA1355.2_JASPAR_rc_shift0 (TRB2:MA1355.2:JASPAR_rc)	0.748	0.561	0.331	0.885	0.881	17	13	17	18	22	17.400	20	; oligos_6nt_mkv4_m4 versus TRB2_MA1355.2_JASPAR_rc (TRB2:MA1355.2:JASPAR_rc); m=20/26; ncol2=11; w=-2; offset=-2; strand=R; shift=0; score= 17.4; awTTAGGGyww- ; cor=0.748; Ncor=0.561; logoDP=0.331; NsEucl=0.885; NSW=0.881; rcor=17; rNcor=13; rlogoDP=17; rNsEucl=18; rNSW=22; rank_mean=17.400; match_rank=20 a 357 298 2 0 598 0 0 0 0 195 180 0 c 28 11 91 0 0 0 0 0 245 1 90 0 g 121 92 0 0 0 598 598 553 0 3 8 0 t 92 197 505 598 0 0 0 45 353 399 320 0
B3_6j9c_D_3D-footprint_shift6 (B3:6j9c_D:3D-footprint)	0.747	0.448	3.668	0.858	0.879	19	23	3	23	23	18.200	21	; oligos_6nt_mkv4_m4 versus B3_6j9c_D_3D-footprint (B3:6j9c_D:3D-footprint); m=21/26; ncol2=6; w=0; offset=4; strand=D; shift=6; score= 18.2; ------tGCATG ; cor=0.747; Ncor=0.448; logoDP=3.668; NsEucl=0.858; NSW=0.879; rcor=19; rNcor=23; rlogoDP=3; rNsEucl=23; rNSW=23; rank_mean=18.200; match_rank=21 a 0 0 0 0 0 0 16 0 0 96 16 16 c 0 0 0 0 0 0 16 0 96 0 0 0 g 0 0 0 0 0 0 16 96 0 0 0 80 t 0 0 0 0 0 0 48 0 0 0 80 0
ONAC127_UN0428.2_JASPAR_rc_shift5 (ONAC127:UN0428.2:JASPAR_rc)	0.719	0.503	1.710	0.849	0.840	21	19	6	26	26	19.600	22	; oligos_6nt_mkv4_m4 versus ONAC127_UN0428.2_JASPAR_rc (ONAC127:UN0428.2:JASPAR_rc); m=22/26; ncol2=7; w=0; offset=3; strand=R; shift=5; score= 19.6; -----gGGCAGC ; cor=0.719; Ncor=0.503; logoDP=1.710; NsEucl=0.849; NSW=0.840; rcor=21; rNcor=19; rlogoDP=6; rNsEucl=26; rNSW=26; rank_mean=19.600; match_rank=22 a 0 0 0 0 0 2 0 0 0 20 0 0 c 0 0 0 0 0 4 0 0 20 0 0 20 g 0 0 0 0 0 11 20 20 0 0 20 0 t 0 0 0 0 0 3 0 0 0 0 0 0
B3_6j9a_A_3D-footprint_rc_shift6 (B3:6j9a_A:3D-footprint_rc)	0.718	0.431	0.205	0.861	0.884	22	24	22	22	20	22.000	23	; oligos_6nt_mkv4_m4 versus B3_6j9a_A_3D-footprint_rc (B3:6j9a_A:3D-footprint_rc); m=23/26; ncol2=6; w=0; offset=4; strand=R; shift=6; score= 22; ------tGCATG ; cor=0.718; Ncor=0.431; logoDP=0.205; NsEucl=0.861; NSW=0.884; rcor=22; rNcor=24; rlogoDP=22; rNsEucl=22; rNSW=20; rank_mean=22.000; match_rank=23 a 0 0 0 0 0 0 18 4 0 74 5 4 c 0 0 0 0 0 0 18 2 96 7 3 4 g 0 0 0 0 0 0 18 88 0 7 3 81 t 0 0 0 0 0 0 42 2 0 8 85 7
B3_5yzy_C_3D-footprint_rc_shift6 (B3:5yzy_C:3D-footprint_rc)	0.747	0.448	0.181	0.857	0.877	18	22	25	24	24	22.600	24	; oligos_6nt_mkv4_m4 versus B3_5yzy_C_3D-footprint_rc (B3:5yzy_C:3D-footprint_rc); m=24/26; ncol2=6; w=0; offset=4; strand=R; shift=6; score= 22.6; ------tGCATg ; cor=0.747; Ncor=0.448; logoDP=0.181; NsEucl=0.857; NSW=0.877; rcor=18; rNcor=22; rlogoDP=25; rNsEucl=24; rNSW=24; rank_mean=22.600; match_rank=24 a 0 0 0 0 0 0 13 0 0 96 0 13 c 0 0 0 0 0 0 13 0 96 0 0 13 g 0 0 0 0 0 0 13 96 0 0 0 57 t 0 0 0 0 0 0 57 0 0 0 96 13
B3_5yzz_C_3D-footprint_rc_shift6 (B3:5yzz_C:3D-footprint_rc)	0.704	0.423	0.205	0.864	0.888	25	26	23	21	19	22.800	25	; oligos_6nt_mkv4_m4 versus B3_5yzz_C_3D-footprint_rc (B3:5yzz_C:3D-footprint_rc); m=25/26; ncol2=6; w=0; offset=4; strand=R; shift=6; score= 22.8; ------tGCATG ; cor=0.704; Ncor=0.423; logoDP=0.205; NsEucl=0.864; NSW=0.888; rcor=25; rNcor=26; rlogoDP=23; rNsEucl=21; rNSW=19; rank_mean=22.800; match_rank=25 a 0 0 0 0 0 0 14 7 0 75 3 11 c 0 0 0 0 0 0 16 7 96 7 3 9 g 0 0 0 0 0 0 14 75 0 7 3 67 t 0 0 0 0 0 0 52 7 0 7 87 9
B3_6j9b_A_3D-footprint_rc_shift6 (B3:6j9b_A:3D-footprint_rc)	0.714	0.428	0.181	0.852	0.869	23	25	24	25	25	24.400	26	; oligos_6nt_mkv4_m4 versus B3_6j9b_A_3D-footprint_rc (B3:6j9b_A:3D-footprint_rc); m=26/26; ncol2=6; w=0; offset=4; strand=R; shift=6; score= 24.4; ------tGCATg ; cor=0.714; Ncor=0.428; logoDP=0.181; NsEucl=0.852; NSW=0.869; rcor=23; rNcor=25; rlogoDP=24; rNsEucl=25; rNSW=25; rank_mean=24.400; match_rank=26 a 0 0 0 0 0 0 12 0 0 96 0 12 c 0 0 0 0 0 0 12 0 84 0 0 12 g 0 0 0 0 0 0 12 96 12 0 0 60 t 0 0 0 0 0 0 60 0 0 0 96 12