; matrix-scan -v 1 -quick -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2026/03/29/matrix-scan_2026-03-29.163156_l7G7C8.matrix -pseudo 1 -decimals 1 -2str -origin end -bginput -markov 1 -bg_pseudo 0.01 -return limits -return pval -uth pval 0.0001 -i $RSAT/public_html/tmp/www-data/2026/03/29/tmp_sequence_2026-03-29.163156_egzQwh.fasta -seq_format fasta -n score ; Quick counting mode ; Input files ; input $RSAT/public_html/tmp/www-data/2026/03/29/tmp_sequence_2026-03-29.163156_egzQwh.fasta ; Matrix files ; matrix 1 $RSAT/public_html/tmp/www-data/2026/03/29/matrix-scan_2026-03-29.163156_l7G7C8.matrix ; Sequence format fasta ; Pseudo counts 1 ; Background model ; Method input ; Markov order 1 ; Strand undef ; Background pseudo-frequency 0.01 ; Residue probabilities ; a 0.29009 ; c 0.20410 ; g 0.19988 ; t 0.30593 ; Thresholds lower upper ; pval NA 0.0001 ; Output columns ; 1 seq_id ; 2 ft_type ; 3 ft_name ; 4 strand ; 5 start ; 6 end ; 7 sequence ; 8 weight #seq_id ft_type ft_name strand start end sequence weight Pval ln_Pval sig randfragment_1_Homo_sapiens_GRCh38_chromosome:GRCh38:18:1:80373285:1:21491054:21493053:D limit START_END D -2000 -1 . 0 0 0 0 randfragment_2_Homo_sapiens_GRCh38_chromosome:GRCh38:11:1:135086622:1:22275843:22277842:R limit START_END D -2000 -1 . 0 0 0 0 randfragment_3_Homo_sapiens_GRCh38_chromosome:GRCh38:4:1:190214555:1:136083218:136085217:R limit START_END D -2000 -1 . 0 0 0 0 randfragment_4_Homo_sapiens_GRCh38_chromosome:GRCh38:5:1:181538259:1:155696846:155698845:D limit START_END D -2000 -1 . 0 0 0 0 randfragment_5_Homo_sapiens_GRCh38_chromosome:GRCh38:6:1:170805979:1:126418100:126420099:R limit START_END D -2000 -1 . 0 0 0 0 randfragment_6_Homo_sapiens_GRCh38_chromosome:GRCh38:5:1:181538259:1:46801266:46803265:R limit START_END D -2000 -1 . 0 0 0 0 randfragment_1_Homo_sapiens_GRCh38_chromosome:GRCh38:20:1:64444167:1:15270745:15272744:D limit START_END D -2000 -1 . 0 0 0 0 randfragment_2_Homo_sapiens_GRCh38_chromosome:GRCh38:10:1:133797422:1:125821982:125823981:R limit START_END D -2000 -1 . 0 0 0 0 randfragment_3_Homo_sapiens_GRCh38_chromosome:GRCh38:13:1:114364328:1:30610578:30612577:R limit START_END D -2000 -1 . 0 0 0 0 randfragment_4_Homo_sapiens_GRCh38_chromosome:GRCh38:2:1:242193529:1:49743141:49745140:D limit START_END D -2000 -1 . 0 0 0 0 randfragment_5_Homo_sapiens_GRCh38_chromosome:GRCh38:21:1:46709983:1:11669972:11671971:R limit START_END D -2000 -1 . 0 0 0 0 randfragment_6_Homo_sapiens_GRCh38_chromosome:GRCh38:3:1:198295559:1:27764120:27766119:D limit START_END D -2000 -1 . 0 0 0 0 randfragment_1_Homo_sapiens_GRCh38_chromosome:GRCh38:3:1:198295559:1:50356644:50358643:D limit START_END D -2000 -1 . 0 0 0 0 randfragment_2_Homo_sapiens_GRCh38_chromosome:GRCh38:8:1:145138636:1:84391786:84393785:R limit START_END D -2000 -1 . 0 0 0 0 randfragment_3_Homo_sapiens_GRCh38_chromosome:GRCh38:14:1:107043718:1:38245275:38247274:D limit START_END D -2000 -1 . 0 0 0 0 randfragment_4_Homo_sapiens_GRCh38_chromosome:GRCh38:5:1:181538259:1:59984507:59986506:D limit START_END D -2000 -1 . 0 0 0 0 randfragment_5_Homo_sapiens_GRCh38_chromosome:GRCh38:2:1:242193529:1:20773932:20775931:D limit START_END D -2000 -1 . 0 0 0 0 randfragment_6_Homo_sapiens_GRCh38_chromosome:GRCh38:2:1:242193529:1:3322990:3324989:D limit START_END D -2000 -1 . 0 0 0 0 randfragment_1_Homo_sapiens_GRCh38_chromosome:GRCh38:21:1:46709983:1:31816923:31818922:D limit START_END D -2000 -1 . 0 0 0 0 randfragment_2_Homo_sapiens_GRCh38_chromosome:GRCh38:X:1:156040895:1:151810116:151812115:D limit START_END D -2000 -1 . 0 0 0 0 randfragment_3_Homo_sapiens_GRCh38_chromosome:GRCh38:6:1:170805979:1:92410846:92412845:R limit START_END D -2000 -1 . 0 0 0 0 randfragment_4_Homo_sapiens_GRCh38_chromosome:GRCh38:11:1:135086622:1:79495433:79497432:R limit START_END D -2000 -1 . 0 0 0 0 randfragment_5_Homo_sapiens_GRCh38_chromosome:GRCh38:3:1:198295559:1:162201012:162203011:R limit START_END D -2000 -1 . 0 0 0 0 randfragment_6_Homo_sapiens_GRCh38_chromosome:GRCh38:14:1:107043718:1:56330987:56332986:R limit START_END D -2000 -1 . 0 0 0 0 randfragment_1_Homo_sapiens_GRCh38_chromosome:GRCh38:14:1:107043718:1:101469037:101471036:R limit START_END D -2000 -1 . 0 0 0 0 randfragment_2_Homo_sapiens_GRCh38_chromosome:GRCh38:9:1:138394717:1:81195979:81197978:R limit START_END D -2000 -1 . 0 0 0 0 randfragment_3_Homo_sapiens_GRCh38_chromosome:GRCh38:10:1:133797422:1:110858301:110860300:D limit START_END D -2000 -1 . 0 0 0 0 randfragment_4_Homo_sapiens_GRCh38_chromosome:GRCh38:11:1:135086622:1:22090291:22092290:D limit START_END D -2000 -1 . 0 0 0 0 randfragment_5_Homo_sapiens_GRCh38_chromosome:GRCh38:2:1:242193529:1:202000071:202002070:D limit START_END D -2000 -1 . 0 0 0 0 randfragment_6_Homo_sapiens_GRCh38_chromosome:GRCh38:4:1:190214555:1:138135032:138137031:R limit START_END D -2000 -1 . 0 0 0 0 randfragment_3_Homo_sapiens_GRCh38_chromosome:GRCh38:4:1:190214555:1:136083218:136085217:R site assembly_2 D -1888 -1877 ATAATTAAAATT 7.9 6.4e-05 -9.657 4.194 randfragment_4_Homo_sapiens_GRCh38_chromosome:GRCh38:5:1:181538259:1:155696846:155698845:D site assembly_2 R -1702 -1691 TAAATTAAAATA 7.5 9.5e-05 -9.262 4.022 randfragment_3_Homo_sapiens_GRCh38_chromosome:GRCh38:13:1:114364328:1:30610578:30612577:R site assembly_2 R -1001 -990 ATAATTAAAATT 7.9 6.4e-05 -9.657 4.194 randfragment_6_Homo_sapiens_GRCh38_chromosome:GRCh38:3:1:198295559:1:27764120:27766119:D site assembly_2 R -74 -63 TAAATTAAATCC 7.9 6.4e-05 -9.657 4.194 randfragment_4_Homo_sapiens_GRCh38_chromosome:GRCh38:5:1:181538259:1:59984507:59986506:D site assembly_2 D -883 -872 GAAATGAAACCC 8.0 5.1e-05 -9.884 4.292 randfragment_3_Homo_sapiens_GRCh38_chromosome:GRCh38:6:1:170805979:1:92410846:92412845:R site assembly_2 R -1708 -1697 ATAATTAAATTT 7.8 6.4e-05 -9.657 4.194 randfragment_3_Homo_sapiens_GRCh38_chromosome:GRCh38:6:1:170805979:1:92410846:92412845:R site assembly_2 D -1208 -1197 AAAATTAAAGTC 7.9 6.4e-05 -9.657 4.194 randfragment_2_Homo_sapiens_GRCh38_chromosome:GRCh38:9:1:138394717:1:81195979:81197978:R site assembly_2 D -100 -89 ACAATTAAACCC 9.5 7.8e-06 -11.761 5.108 randfragment_3_Homo_sapiens_GRCh38_chromosome:GRCh38:10:1:133797422:1:110858301:110860300:D site assembly_2 D -1704 -1693 TGAATTAAACCA 7.8 6.4e-05 -9.657 4.194 randfragment_5_Homo_sapiens_GRCh38_chromosome:GRCh38:2:1:242193529:1:202000071:202002070:D site assembly_2 R -516 -505 AAAATTAAATTT 7.6 8.3e-05 -9.397 4.081 randfragment_6_Homo_sapiens_GRCh38_chromosome:GRCh38:4:1:190214555:1:138135032:138137031:R site assembly_2 D -429 -418 ACAATTAAAATC 8.0 5.1e-05 -9.884 4.292 ; ; Matrices ; matrix name ncol nrow pseudo Wmin Wmax Wrange ; 1 assembly_2 12 4 0 -22.700 10.600 33.300 a:0.290 c:0.204 g:0.200 t:0.306 ; Number of sequences scanned 30 ; Sum of sequence lengths 60000 ; N residues 0 ; Matches per matrix ; matrix name matches scored ; 1 assembly_2 11 0 ; TOTAL 11 0 ; Host name rsat ; Job started 2026-03-29.163156 ; Job done 2026-03-29.163157 ; Seconds 0.58 ; user 0.58 ; system 0.04 ; cuser 0.5 ; csystem 0.03