; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/03/29/oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/03/29/oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/03/29/oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/03/29/oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/03/29/oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	1	0	1	0	0	1	0	0	0	0	0	0
c	0	0	0	0	0	0	0	0	0	1	1	1
g	0	0	0	1	1	0	1	1	1	0	0	0
t	0	1	0	0	0	0	0	0	0	0	0	0
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/29//oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/29//oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices_logo_m1_rc.png
;
a	0	0	3	0	0	1	0	0	0	3	1	1
c	0	1	0	0	0	2	0	0	0	0	1	0
g	0	2	0	3	3	0	1	3	3	0	1	1
t	3	0	0	0	0	0	2	0	0	0	0	1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/29//oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/29//oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices_logo_m2_rc.png
;
a	2	2	4	0	0	1	0	1	0	0	0	1
c	0	2	0	0	0	3	0	3	4	0	0	1
g	1	0	0	4	3	0	3	0	0	0	2	0
t	1	0	0	0	1	0	1	0	0	4	2	2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/29//oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/29//oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices_logo_m3_rc.png
;
a	7	5	0	0	0	0	0	6	9
c	2	6	24	24	0	24	24	9	6
g	6	6	0	0	0	0	0	1	1
t	9	7	0	0	24	0	0	8	8
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/29//oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/29//oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices_logo_m4_rc.png
;
a	2	1	0	0	0	0	0	3	1
c	2	2	0	8	8	8	8	2	2
g	1	2	8	0	0	0	0	1	5
t	3	3	0	0	0	0	0	2	0
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/29//oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/29//oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices_logo_m5_rc.png
;
a	0	0	3	0	0	1	0	0	0	3	1	1	0	0
c	0	1	0	0	0	2	0	0	0	0	1	0	1	0
g	0	2	0	3	3	0	1	3	3	0	1	1	2	1
t	3	0	0	0	0	0	2	0	0	0	0	1	0	2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/29//oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/29//oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices_logo_m6_rc.png
;
a	13	8	39	0	0	0	39	12	14
c	8	11	0	0	0	0	0	6	6
g	6	10	0	0	39	39	0	11	5
t	12	10	0	39	0	0	0	10	14
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/29//oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/29//oligo-analysis_2026-03-29.133235_nH77bN_pssm_count_matrices_logo_m7_rc.png
;
; Host name	rsat
; Job started	2026-03-29.133239
; Job done	2026-03-29.133241
; Seconds	0.13
;	user	0.13
;	system	0.07
;	cuser	1.71
;	csystem	0.29