peak-motifs CYP82C4_Angler

peak-motifs  -v 1 -title CYP82C4_Angler_Up2 -i $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.142436_2026-03-30.142436_iERbuB/peak-motifspeak_seq -ctrl $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.142436_2026-03-30.142436_iERbuB/peak-motifscontrol_seq -markov auto -disco oligos,dyads -nmotifs 10 -minol 6 -maxol 8 -merge_lengths -2str -origin end -offset -200 -motif_db footprintDB tf $RSAT/public_html/motif_databases/footprintDB/footprintDB.motif.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.142436_2026-03-30.142436_iERbuB

Sequence composition (test sequences)

Nb of peaks: 14
Total seq. size: 9 kb
Min length: 238 bp
Mean length: 654.786 bp
Max length: 701 bp [ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Sequence composition (ctrl sequences)

Nb of peaks: 34262
Total seq. size: 19694 kb
Min length: 201 bp
Mean length: 574.793 bp
Max length: 701 bp [ seq: converted purged ]
[ lengths: list distrib graph ]

Nucleotide composition profiles

Transition frequencies
Position profiles

[ 1nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

Dinucleotide composition profiles

Transition frequencies
Position profiles

[ 2nt: freq transitions ]
[ bg model: Inclusive format ]
[ profile: table html(individual) ]

motif discovery

oligos_6-8nt

oligos_6-8nt_m1	assembly: agtgttag (sig=1.15; e-value=0.071)	RC: ctaacact
oligos_6-8nt_m2	assembly: aacctact (sig=1.03; e-value=0.093)	RC: agtaggtt
oligos_6-8nt_m3	assembly: aagcat (sig=0.23; e-value=0.59)	RC: atgctt
oligos_6-8nt_m4	: (sig=; e-value=1)	RC:
oligos_6-8nt_m5	: (sig=; e-value=1)	RC:
oligos_6-8nt_m6	: (sig=; e-value=1)	RC:
oligos_6-8nt_m7	: (sig=; e-value=1)	RC:
oligos_6-8nt_m8	: (sig=; e-value=1)	RC:
oligos_6-8nt_m9	: (sig=; e-value=1)	RC:
oligos_6-8nt_m10	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

dyads_test_vs_ctrl

dyads_test_vs_ctrl_m1	assembly: gcannnncca (sig=0.42; e-value=0.38)	RC: tggnnnntgc
dyads_test_vs_ctrl_m2	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m3	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m4	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m5	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m6	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m7	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m8	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m9	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m10	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

Motif discovery

Motif 1 oligos_6-8nt_m1

k-mer sig=1.15; evalue=0.071

twAGTGTTaGtb

VACTAACACTWA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor twAGTGTTaGtb

ZAT6:ZAT6:ArabidopsisPBM ZAT6/ZAT6/ArabidopsisPBM R 10 0.8333 0.881 0.734 NA NA

CG10267:CG10267_SANGER_5_FBgn0037446:FlyZincFinger CG10267/CG10267_SANGER_5_FBgn0037446/FlyZincFinger R 10 0.8333 0.858 0.715 NA NA

Zif:UN0793.1:JASPAR Zif/UN0793.1/JASPAR R 10 0.8333 0.858 0.715 NA NA

Total matches= 117 (114 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4 (28.57%)
Max nb of predicted sites per peak: 3
(AT5G38820)
Mean nb of predicted sites per peak: 2.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6-8nt_m2

k-mer sig=1.03; evalue=0.093

wymACCTACttc

GAAGTAGGTKRW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wymACCTACttc

MYB80:MA1778.2:JASPAR MYB80/MA1778.2/JASPAR D 12 1.0000 0.831 0.831 NA NA

MYB39:MA1769.2:JASPAR MYB39/MA1769.2/JASPAR D 12 1.0000 0.827 0.827 NA NA

MYB43:MA1772.2:JASPAR MYB43/MA1772.2/JASPAR D 12 1.0000 0.814 0.814 NA NA

Total matches= 205 (202 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 8 (57.14%)
Max nb of predicted sites per peak: 2
(BHLH101)
Mean nb of predicted sites per peak: 1.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6-8nt_m3

k-mer sig=0.23; evalue=0.59

rhAAGCATaw

WTATGCTTDY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rhAAGCATaw

HAT1:MA1024.1:JASPAR HAT1/MA1024.1/JASPAR D 10 1.0000 0.727 0.727 NA NA

HAT1:M0851_1.02:CISBP HAT1/M0851_1.02/CISBP D 10 1.0000 0.726 0.726 NA NA

Mafg:M0308_1.02:CISBP Mafg/M0308_1.02/CISBP D 10 1.0000 0.702 0.702 NA NA

Total matches= 127 (124 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 4 (28.57%)
Max nb of predicted sites per peak: 3
(ORG3)
Mean nb of predicted sites per peak: 2.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 dyads_test_vs_ctrl_m1

k-mer sig=0.42; evalue=0.38

amGCakstwCCamg

CKTGGWASMTGCKT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor amGCakstwCCamg

E(spl)m7-HLH:UN0762.1:JASPAR E(spl)m7-HLH/UN0762.1/JASPAR D 11 0.7857 0.707 0.556 NA NA

HLHm7:M5022_1.02:CISBP HLHm7/M5022_1.02/CISBP R 11 0.7857 0.707 0.555 NA NA

ZNF211:MA1974.2:JASPAR ZNF211/MA1974.2/JASPAR D 10 0.7143 0.760 0.543 NA NA

Total matches= 34 (31 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (42.86%)
Max nb of predicted sites per peak: 3
(ORG3)
Mean nb of predicted sites per peak: 1.50

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: CYP82C4_Angler_Up2 (30/03/2026 14:38)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results