RSAT - peak-motifs result

Analysis: _CYP82C4_Atted_Up1 (30/03/2026 15:50)

peak-motifs  -v 1 -title _CYP82C4_Atted_Up1 -i $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.151029_2026-03-30.151029_POJCX6/peak-motifspeak_seq -ctrl $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.151029_2026-03-30.151029_POJCX6/peak-motifscontrol_seq -markov auto -disco oligos,dyads -nmotifs 10 -minol 6 -maxol 8 -merge_lengths -2str -origin end -offset -200 -motif_db footprintDB tf $RSAT/public_html/motif_databases/footprintDB/footprintDB.motif.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.151029_2026-03-30.151029_POJCX6

motif discovery
oligos_6-8nt	oligos_6-8nt_m1 assembly: ttcatgccg (sig=3.49; e-value=0.00032) RC: cggcatgaa oligos_6-8nt_m2 assembly: atgtatattata (sig=2.42; e-value=0.0038) RC: tataatatacat oligos_6-8nt_m3 assembly: gtcaac (sig=1.92; e-value=0.012) RC: gttgac oligos_6-8nt_m4 assembly: aagtcaac (sig=1.92; e-value=0.012) RC: gttgactt oligos_6-8nt_m5 assembly: cgtgga (sig=0.72; e-value=0.19) RC: tccacg oligos_6-8nt_m6 assembly: ataaata (sig=0.71; e-value=0.19) RC: tatttat oligos_6-8nt_m7 assembly: acgtat (sig=0.47; e-value=0.34) RC: atacgt oligos_6-8nt_m8 assembly: tataatg (sig=0.29; e-value=0.51) RC: cattata oligos_6-8nt_m9 assembly: atgtatattaa (sig=2.42; e-value=0.0038) RC: ttaatatacat oligos_6-8nt_m10 assembly: tataatatacatga (sig=2.42; e-value=0.0038) RC: tcatgtatattata	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
dyads_test_vs_ctrl	dyads_test_vs_ctrl_m1 assembly: tcatgcc (sig=2.77; e-value=0.0017) RC: ggcatga dyads_test_vs_ctrl_m2 assembly: catgnnnnnnnnttat (sig=2.77; e-value=0.0017) RC: ataannnnnnnncatg dyads_test_vs_ctrl_m3 assembly: atannnnnnnnnnnnaatta (sig=2.77; e-value=0.0017) RC: taattnnnnnnnnnnnntat dyads_test_vs_ctrl_m4 assembly: aaannnnnnnnnnnnacg (sig=2.77; e-value=0.0017) RC: cgtnnnnnnnnnnnnttt dyads_test_vs_ctrl_m5 assembly: ctannnnnnnnnnnnnata (sig=2.77; e-value=0.0017) RC: tatnnnnnnnnnnnnntag dyads_test_vs_ctrl_m6 assembly: attnnnnnnnnnnnnnata (sig=2.77; e-value=0.0017) RC: tatnnnnnnnnnnnnnaat dyads_test_vs_ctrl_m7 assembly: gtcnnnnnnnnnnnnnnnnnnnata (sig=2.77; e-value=0.0017) RC: tatnnnnnnnnnnnnnnnnnnngac dyads_test_vs_ctrl_m8 assembly: atannnnnnnnnnnnnnnnnnata (sig=2.77; e-value=0.0017) RC: tatnnnnnnnnnnnnnnnnnntat dyads_test_vs_ctrl_m9 assembly: taannnnnnnnnnnnnnntaa (sig=2.77; e-value=0.0017) RC: ttannnnnnnnnnnnnnntta dyads_test_vs_ctrl_m10 assembly: aatnnnnnnnnnnnnnnntta (sig=2.77; e-value=0.0017) RC: taannnnnnnnnnnnnnnatt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6-8nt_m1	k-mer sig=3.49; evalue=0.00032 ssttCATGCCgtw WACGGCATGAASS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ssttCATGCCgtw hbx7:M0876_1.02:CISBP hbx7/M0876_1.02/CISBP D 13 1.0000 0.701 0.701 NA NA M03D4.4:M0460_1.02:CISBP M03D4.4/M0460_1.02/CISBP R 11 0.8462 0.809 0.685 NA NA Sox8:UP00051A_2:UniPROBE Sox8/UP00051A_2/UniPROBE D 13 0.9286 0.722 0.670 NA NA Total matches= 47 (44 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 23 (45.10%) Max nb of predicted sites per peak: 3  (STOP2) Mean nb of predicted sites per peak: 1.30	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6-8nt_m2	k-mer sig=2.42; evalue=0.0038 rwatGtATattatark MYTATAATATACATWY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rwatGtATattatark Sall-b:UN0468.1:JASPAR Sall-b/UN0468.1/JASPAR D 16 0.8000 0.860 0.688 NA NA ATHB22:M0844_1.02:CISBP ATHB22/M0844_1.02/CISBP R 13 0.8125 0.839 0.682 NA NA AT1G04880.ampDAP:M0144:AthalianaCistrome AT1G04880.ampDAP/M0144/AthalianaCistrome D 14 0.8235 0.744 0.613 NA NA Total matches= 50 (47 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 14 (27.45%) Max nb of predicted sites per peak: 3  (IRT1) Mean nb of predicted sites per peak: 1.29	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6-8nt_m3	k-mer sig=1.92; evalue=0.012 kvGTCaaCgm KCGTTGACBM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor kvGTCaaCgm WRKY11:M1693_1.02:CISBP WRKY11/M1693_1.02/CISBP D 10 1.0000 0.931 0.931 NA NA WRKY14:M1678_1.02:CISBP WRKY14/M1678_1.02/CISBP D 10 1.0000 0.925 0.925 NA NA WRKY45:WRKY45:ArabidopsisPBM WRKY45/WRKY45/ArabidopsisPBM R 10 1.0000 0.915 0.915 NA NA Total matches= 536 (533 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 30 (58.82%) Max nb of predicted sites per peak: 4  (IRT1) Mean nb of predicted sites per peak: 1.70	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6-8nt_m4	k-mer sig=1.92; evalue=0.012 vvAAGtCAACdm KHGTTGACTTBB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor vvAAGtCAACdm WRKY15.ampDAP:M0813:AthalianaCistrome WRKY15.ampDAP/M0813/AthalianaCistrome R 12 1.0000 0.936 0.936 NA NA WRKY65.ampDAP:M0802:AthalianaCistrome WRKY65.ampDAP/M0802/AthalianaCistrome R 12 1.0000 0.928 0.928 NA NA WRKY29.ampDAP:M0796:AthalianaCistrome WRKY29.ampDAP/M0796/AthalianaCistrome D 12 0.9231 0.957 0.883 NA NA Total matches= 365 (362 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (41.18%) Max nb of predicted sites per peak: 3  (AT3G06890) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6-8nt_m5	k-mer sig=0.72; evalue=0.19 srCGtGGasb VSTCCACGYS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor srCGtGGasb PK23964.1:UN0061.1:JASPAR PK23964.1/UN0061.1/JASPAR R 10 1.0000 0.842 0.842 NA NA HAC1:M0353_1.02:CISBP HAC1/M0353_1.02/CISBP R 10 1.0000 0.794 0.794 NA NA MYC3:M0165_1.02:CISBP MYC3/M0165_1.02/CISBP D 10 1.0000 0.758 0.758 NA NA Total matches= 626 (623 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 21 (41.18%) Max nb of predicted sites per peak: 3  (UGT75B2) Mean nb of predicted sites per peak: 1.52	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_6-8nt_m6	k-mer sig=0.71; evalue=0.19 rmATAAATvrh DYBATTTATKY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rmATAAATvrh DMRT2:M0633_1.02:CISBP DMRT2/M0633_1.02/CISBP R 10 0.9091 0.879 0.799 NA NA HOXA10:HXA10_HUMAN.H10MO.C|M01234:HOCOMOCO HOXA10/HXA10_HUMAN.H10MO.C|M01234/HOCOMOCO R 11 0.9167 0.850 0.779 NA NA HOXB8:HXB8_HUMAN.H10MO.C|M01248:HOCOMOCO HOXB8/HXB8_HUMAN.H10MO.C|M01248/HOCOMOCO R 11 1.0000 0.738 0.738 NA NA Total matches= 426 (423 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 0 (0.00%) Max nb of predicted sites per peak: Mean nb of predicted sites per peak: 0.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_6-8nt_m7	k-mer sig=0.47; evalue=0.34 yrACGTATsk MSATACGTYR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yrACGTATsk ZBTB20:UN0143.2:JASPAR ZBTB20/UN0143.2/JASPAR D 9 0.9000 0.858 0.772 NA NA bzpF:M0285_1.02:CISBP bzpF/M0285_1.02/CISBP R 10 0.9091 0.844 0.767 NA NA GLYMA-13G317000:UN0421.1:JASPAR GLYMA-13G317000/UN0421.1/JASPAR R 10 1.0000 0.745 0.745 NA NA Total matches= 218 (215 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (39.22%) Max nb of predicted sites per peak: 4  (NAS1) Mean nb of predicted sites per peak: 1.95	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_6-8nt_m8	k-mer sig=0.29; evalue=0.51 trkATAATGbm KVCATTATMYA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor trkATAATGbm HB22_B73_1_m1:EEAD0403:EEADannot HB22_B73_1_m1/EEAD0403/EEADannot D 11 1.0000 0.763 0.763 NA NA Solyc05g007180.3.1_HOMEOBOX_1_AT1G69780:EEAD0650:EEADannot Solyc05g007180.3.1_HOMEOBOX_1_AT1G69780/EEAD0650/EEADannot R 11 1.0000 0.746 0.746 NA NA ATHB13:MA1212.1:JASPAR ATHB13/MA1212.1/JASPAR D 11 1.0000 0.735 0.735 NA NA Total matches= 424 (421 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 27 (52.94%) Max nb of predicted sites per peak: 4  (SLAH1) Mean nb of predicted sites per peak: 1.48	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_6-8nt_m9	k-mer sig=2.42; evalue=0.0038 khatGtAtATtaatr YATTAATATACATDM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor khatGtAtATtaatr TBP:UP00029A_1:UniPROBE TBP/UP00029A_1/UniPROBE D 15 0.9375 0.721 0.676 NA NA Tbp:PB0080.1:JASPAR Tbp/PB0080.1/JASPAR D 15 0.9375 0.721 0.676 NA NA ATHB22:M0844_1.02:CISBP ATHB22/M0844_1.02/CISBP R 13 0.8667 0.769 0.667 NA NA Total matches= 87 (84 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (29.41%) Max nb of predicted sites per peak: 3  (PP2A8) Mean nb of predicted sites per peak: 1.27	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_6-8nt_m10	k-mer sig=2.42; evalue=0.0038 rctataaTATaCatgacv BGTCATGTATATTATAGY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rctataaTATaCatgacv Sall-b:UN0468.1:JASPAR Sall-b/UN0468.1/JASPAR R 17 0.8095 0.849 0.687 NA NA NHP6B:MA0346.1:JASPAR NHP6B/MA0346.1/JASPAR R 18 0.9000 0.742 0.668 NA NA Nhp6b:UP00325A_1:UniPROBE Nhp6b/UP00325A_1/UniPROBE R 18 0.9000 0.742 0.668 NA NA Total matches= 28 (25 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 16 (31.37%) Max nb of predicted sites per peak: 3  (AT4G00910) Mean nb of predicted sites per peak: 1.50	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   dyads_test_vs_ctrl_m1	k-mer sig=2.77; evalue=0.0017 kktCATGCCky RMGGCATGAMM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor kktCATGCCky M03D4.4:M0460_1.02:CISBP M03D4.4/M0460_1.02/CISBP R 11 1.0000 0.840 0.840 NA NA AtLEC2:AtLEC2:Athamap AtLEC2/AtLEC2/Athamap D 10 0.9091 0.739 0.672 NA NA LEC2:MA0581.1:JASPAR LEC2/MA0581.1/JASPAR D 10 0.8333 0.759 0.632 NA NA Total matches= 77 (74 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 16 (31.37%) Max nb of predicted sites per peak: 3  (IRT1) Mean nb of predicted sites per peak: 1.19	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   dyads_test_vs_ctrl_m2	k-mer sig=2.77; evalue=0.0017 ytCatGsmkksykSttatcs SGATAASMRSMMKSCATGAR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ytCatGsmkksykSttatcs GATA2:MA0036.2:JASPAR GATA2/MA0036.2/JASPAR D 12 0.5455 0.777 0.424 NA NA At1g49010:MA1186.1:JASPAR At1g49010/MA1186.1/JASPAR D 13 0.5909 0.711 0.420 NA NA LEC2:MA0581.1:JASPAR LEC2/MA0581.1/JASPAR D 11 0.5500 0.764 0.420 NA NA Total matches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 20 (39.22%) Max nb of predicted sites per peak: 2  (STOP2) Mean nb of predicted sites per peak: 1.25	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   dyads_test_vs_ctrl_m3	k-mer sig=2.77; evalue=0.0017 wkatasryrysadsSwtaattaka TMTAATTAWSSHTSRYRYSTATMW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wkatasryrysadsSwtaattaka ATHB23:MA1327.1:JASPAR ATHB23/MA1327.1/JASPAR R 19 0.7037 0.762 0.536 NA NA ATHB34:MA1328.1:JASPAR ATHB34/MA1328.1/JASPAR D 15 0.6250 0.790 0.494 NA NA Dlx-c:MA1851.1:JASPAR Dlx-c/MA1851.1/JASPAR D 17 0.5862 0.839 0.492 NA NA Total matches= 207 (204 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 18 (35.29%) Max nb of predicted sites per peak: 4  (NAS1) Mean nb of predicted sites per peak: 1.39	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   dyads_test_vs_ctrl_m4	k-mer sig=2.77; evalue=0.0017 skaaasryGySakvhtkaCGka TMCGTMADBMTSRCRYSTTTMS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor skaaasryGySakvhtkaCGka Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 13 (25.49%) Max nb of predicted sites per peak: 2  (CYP82C4) Mean nb of predicted sites per peak: 1.31	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   dyads_test_vs_ctrl_m5	k-mer sig=2.77; evalue=0.0017 vaCtasgyrysmrsCwtwatatg CATATWAWGSYKSRYRCSTAGTB	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor vaCtasgyrysmrsCwtwatatg Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 13 (25.49%) Max nb of predicted sites per peak: 1  (UGT72E1) Mean nb of predicted sites per peak: 1.00	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 16   dyads_test_vs_ctrl_m6	k-mer sig=2.77; evalue=0.0017 hwattsrygystayrCwtatayb VRTATAWGYRTASRCRYSAATWD	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor hwattsrygystayrCwtatayb Zfp128:PB0198.1:JASPAR Zfp128/PB0198.1/JASPAR D 14 0.6087 0.821 0.500 NA NA Zfp128:UP00094A_2:UniPROBE Zfp128/UP00094A_2/UniPROBE D 14 0.6087 0.818 0.498 NA NA FOXR2:UN0123.2:JASPAR FOXR2/UN0123.2/JASPAR R 16 0.6957 0.704 0.490 NA NA Total matches= 13 (10 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 23 (45.10%) Max nb of predicted sites per peak: 3  (scpl31) Mean nb of predicted sites per peak: 1.35	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 17   dyads_test_vs_ctrl_m7	k-mer sig=2.77; evalue=0.0017 taGtCrksvygwwykyywwtwykkataya TRTATMMRWAWWRRMRWWCRBSMYGACTA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor taGtCrksvygwwykyywwtwykkataya Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 15 (29.41%) Max nb of predicted sites per peak: 3  (FRO2) Mean nb of predicted sites per peak: 1.33	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 18   dyads_test_vs_ctrl_m8	k-mer sig=2.77; evalue=0.0017 ttatasryrysadsSwtaakcdtataka TMTATAHGMTTAWSSHTSRYRYSTATAA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ttatasryrysadsSwtaakcdtataka Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 13 (25.49%) Max nb of predicted sites per peak: 2  (NAS1) Mean nb of predicted sites per peak: 1.15	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 19   dyads_test_vs_ctrl_m9	k-mer sig=2.77; evalue=0.0017 wmtaasryrysaksatkaGktawwa TWWTAMCTMATSMTSRYRYSTTAKW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wmtaasryrysaksatkaGktawwa Hox3:MA1884.1:JASPAR Hox3/MA1884.1/JASPAR R 20 0.8000 0.712 0.569 NA NA Pou1f1:UP00158A_1:UniPROBE Pou1f1/UP00158A_1/UniPROBE R 17 0.6800 0.706 0.480 NA NA Pou1f1:PH0142.1:JASPAR Pou1f1/PH0142.1/JASPAR R 17 0.6800 0.705 0.480 NA NA Total matches= 17 (14 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 14 (27.45%) Max nb of predicted sites per peak: 3  (GULLO2) Mean nb of predicted sites per peak: 1.29	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 20   dyads_test_vs_ctrl_m10	k-mer sig=2.77; evalue=0.0017 wraatsryRyskrytyatwattarw WYTAATWATRARYMSRYRYSATTYW	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor wraatsryRyskrytyatwattarw Sox21:PB0069.1:JASPAR Sox21/PB0069.1/JASPAR D 16 0.6400 0.740 0.474 NA NA Sox21:UP00071A_1:UniPROBE Sox21/UP00071A_1/UniPROBE D 16 0.6400 0.738 0.472 NA NA Sox14:UP00004A_1:UniPROBE Sox14/UP00004A_1/UniPROBE R 16 0.6400 0.734 0.470 NA NA Total matches= 12 (9 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 14 (27.45%) Max nb of predicted sites per peak: 2  (AT3G46270) Mean nb of predicted sites per peak: 1.14	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title _CYP82C4_Atted_Up1 -i $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.151029_2026-03-30.151029_POJCX6/peak-motifspeak_seq -ctrl $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.151029_2026-03-30.151029_POJCX6/peak-motifscontrol_seq -markov auto -disco oligos,dyads -nmotifs 10 -minol 6 -maxol 8 -merge_lengths -2str -origin end -offset -200 -motif_db footprintDB tf $RSAT/public_html/motif_databases/footprintDB/footprintDB.motif.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.151029_2026-03-30.151029_POJCX6

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