; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/results/oligos_7nt_mkv2/peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	25	17	6	33	0	0	4	2	64	59	61	5	11	16
c	8	12	20	16	0	6	58	3	0	4	1	8	22	18
g	8	15	5	6	68	58	3	1	3	1	3	5	11	19
t	27	24	37	13	0	4	3	62	1	4	3	50	24	15
//
; Sites	68
>site_0
AGAAGGCTAATTAA
>site_1
TTTAGCCTAAATAG
>site_2
TTTAGGCTAAATAT
>site_3
TCTGGGCTAAATGC
>site_4
TTTAGGCTAAACCA
>site_5
TTTAGCCTAAACCC
>site_6
TCCGGGCTAAATGG
>site_7
AACAGGCTAAATCG
>site_8
TTGAGGGTAAAGTA
>site_9
GATAGTCTACATTG
>site_10
CTGCGGCTAAAGTG
>site_11
ACTAGTCTAACTTT
>site_12
AACCGGGTAAATTC
>site_13
GGTCGGCAAAATCC
>site_14
GATAGTCTAAAACA
>site_15
ACAGGGCTAAGTAT
>site_16
AGTAGGCTATATTC
>site_17
TTTTGGCTAAATCG
>site_18
TCCCGGCTAAAGTT
>site_19
TTCAGGCTAGATCA
>site_20
CCGAGGCTAAACTA
>site_21
GTTTGGCTGAATCG
>site_22
ATTAGGCTAAACCG
>site_23
AGTCGGTTAAATTT
>site_24
ACTCGGCCAAATGC
>site_25
CATAGGCTAAATTG
>site_26
GTCTGGCTAAATCG
>site_27
AATAGCCTAAACAA
>site_28
CACCGGGTAAATGT
>site_29
TGCCGGCTAAATCA
>site_30
TTCAGGCTAAACCC
>site_31
GATTGGCCAAATCG
>site_32
TATGGGCTATATAG
>site_33
AACCGGTTAAATTG
>site_34
AACAGGCTAAATCT
>site_35
TTTAGGATAAAATC
>site_36
GGTAGGCCAATTTA
>site_37
TGTTGTCTAAATCA
>site_38
TGCCGGCTAAATGC
>site_39
GCCCGGCTAAATTA
>site_40
TGGAGGCTAAATGA
>site_41
TTTTGCCTAAATGG
>site_42
TTTAGGCAAAATGC
>site_43
CGCTGGCTAAAAGA
>site_44
CGTTGGCTGAATTT
>site_45
AGTAGGCTATATTC
>site_46
ACAGGGCTAAGTAT
>site_47
ATTTGGATAAATCC
>site_48
TGTCGGATAAATAT
>site_49
ACCGGGCTAAATTT
>site_50
ATTAGGCTAATTGC
>site_51
AATCGGCTAAATCT
>site_52
AATTGGCTTAATCA
>site_53
CTACGGATAAATTG
>site_54
ATCCGGCTAAACAT
>site_55
AACTGGCTACATCG
>site_56
ATCAGGCTAAACTC
>site_57
AATAGGCTATAGTT
>site_58
TCGCGGTTAAATCA
>site_59
TTTAGGCTACAATT
>site_60
TGTAGCCTAAAGGG
>site_61
TTTTGGCTGAATTG
>site_62
TTCTGGCTAAGTTA
>site_63
TATAGGCGACATAC
>site_64
ATCAGCCTAAATCG
>site_65
ACTAGGCTAAAACC
>site_66
TAAAGGCTAAATAC
>site_67
CGAAGGCTAAATTC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m1_rc.png
;
a	11	20	69	2	0	0	4	1	6	24	17
c	18	25	1	3	3	3	1	68	53	17	18
g	25	18	2	69	73	72	2	2	5	17	23
t	22	13	4	2	0	1	69	5	12	18	18
//
; Sites	76
>site_0
CCAGGGTCGAA
>site_1
AAAGGCTCCAA
>site_2
GTAGGTTCCTT
>site_3
TAAGGGTCAAG
>site_4
GTAGGGCCCGA
>site_5
GGAGGGTCTAC
>site_6
TTAGGGGCCAT
>site_7
CAAGGGTCCAG
>site_8
CTGGGGTCCTC
>site_9
GGAGGGTCGAG
>site_10
TCAGGGTCCAC
>site_11
GCAGGCTCCCT
>site_12
TCAGGGTCCAG
>site_13
TCAGGGTCCAT
>site_14
GAAGGGTCTGT
>site_15
CCAGGGTCCAC
>site_16
CCAGGGTCCAG
>site_17
TCAGGGTCCAG
>site_18
TGAGGGTCCAA
>site_19
CGAGCGTCCGC
>site_20
GGAGGGTCGGG
>site_21
CTAGGGTCTCC
>site_22
GGAGGGTCTTG
>site_23
TTTGGGTCCGC
>site_24
CGGGGGTCCGC
>site_25
GCAGGGACCAA
>site_26
AAAGGGTCCCC
>site_27
GCAGGGTTCCA
>site_28
AGATGGTCCGT
>site_29
AAACGGTCCCA
>site_30
ATAGGGTGCTG
>site_31
GGAAGGTCCAT
>site_32
GCAGCGTCCAC
>site_33
AGAGGGTCTTA
>site_34
CTCGGGTCCCA
>site_35
TTAGGGACCGG
>site_36
AAAGGGTCCTG
>site_37
ATAGGGTCTCA
>site_38
CCAGGGTTCTC
>site_39
TTAGGGTCTTG
>site_40
CAAGGGTCGGG
>site_41
CTTGGGTCCGT
>site_42
TCAGGGTCCAG
>site_43
GCAGGCTCCCT
>site_44
TCAGGGTCCAC
>site_45
TCAGGGTCCTT
>site_46
CGACGGTCCTT
>site_47
GAAGGGGCCAG
>site_48
TATGGGTCCCA
>site_49
CCAGGGTCTGT
>site_50
CGAGGGTCAAC
>site_51
TGAGGGTCACA
>site_52
GAAGGGTCGTC
>site_53
TAACGGTCCGA
>site_54
GGAAGGTCCTT
>site_55
TCAGGGTCCTG
>site_56
GGAGGGTCCGT
>site_57
AATGGGTCCCG
>site_58
TCAGGGTCCTT
>site_59
CAAGGGTCTTA
>site_60
ACAGGGTTCAC
>site_61
CAAGGGTCACG
>site_62
CGATGGTCCCA
>site_63
GTAGGGTGCCC
>site_64
TAAGGGTTCGG
>site_65
GAAGGGTACAA
>site_66
TCAGGGTCATG
>site_67
GCAGGGTCAGG
>site_68
GAAGGGTCTAG
>site_69
GGAGCGTCCGT
>site_70
GCAGGGTCTCG
>site_71
GCAGGGACCCT
>site_72
GAAGGGTCCCT
>site_73
TAAGGGTTCTC
>site_74
TGAGGGTCTGC
>site_75
ACAGGGACCTA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m2_rc.png
;
a	34	40	4	6	110	8	131	132	137	31	39
c	37	41	3	1	26	1	3	3	2	28	31
g	33	32	136	134	7	9	7	10	4	32	32
t	45	36	6	8	6	131	8	4	6	58	47
//
; Sites	149
>site_0
CGGGATAAAGG
>site_1
CAGGAGAAATT
>site_2
CGTGATAAATC
>site_3
GAGCATAAAAA
>site_4
CAGGATAGACA
>site_5
ACGGAGAAAGT
>site_6
TAGTATAAAGC
>site_7
TAGGCTAAATA
>site_8
TTGGATAAAGA
>site_9
GTCGATAAAAA
>site_10
AGGGATAACAT
>site_11
TTAGATAAATC
>site_12
TGGGCTAAATG
>site_13
TAGGCTAAACC
>site_14
AAGGATTAAAC
>site_15
TTGGATAATTC
>site_16
CGGGCTAAATG
>site_17
ATGGAGAAACA
>site_18
CAGGCTAAATC
>site_19
GAGGGTAAAGT
>site_20
AAGGATAGATT
>site_21
CTGGACAAACG
>site_22
TTGGAGAAACT
>site_23
GAGAATAAATA
>site_24
CGGGATACAGT
>site_25
TGGGAAAAAAA
>site_26
TTGGATAGAAT
>site_27
GCGGCTAAAGT
>site_28
CCGGGTAAATT
>site_29
AGGGATAAATC
>site_30
TCGGAGAAAGC
>site_31
TTGGATAATTC
>site_32
TTGGCTAAATC
>site_33
AGTGATAAAGG
>site_34
GGCGATAAAAA
>site_35
GTGTATAAAAC
>site_36
TCGGATAGATT
>site_37
TTGGATAAAGC
>site_38
TCGGATATAGA
>site_39
TAGAATAAAGT
>site_40
ACTGATAAATG
>site_41
TGGGGTAAAGC
>site_42
TGGGATAGACA
>site_43
GCGGATAAATT
>site_44
CTGGAGAAAGA
>site_45
ACGGATCAACA
>site_46
CCGGCTAAAGT
>site_47
ACTGATAAACA
>site_48
GAGGCTAAACT
>site_49
CGGGGTAAATT
>site_50
AGGGAAAAATT
>site_51
ATGGATAGAGA
>site_52
ATGGTTAAACT
>site_53
TAGGCTAAACC
>site_54
TCGGTTAAATT
>site_55
CCGAATAAACT
>site_56
ACGGATTAATT
>site_57
TGGGATTAATC
>site_58
TCGGATTAATC
>site_59
TAGGCTAAATT
>site_60
CAGGATAAAAT
>site_61
TCGGGTAAAAG
>site_62
TGGGAGAAAAG
>site_63
ACGGATGAATG
>site_64
TTGGATACAAG
>site_65
GCGGATATAAT
>site_66
TGGGGTAAAAT
>site_67
ATGGATGAAGT
>site_68
CTGGCTAAATC
>site_69
CCGGGTAAATG
>site_70
CCGGCTAAATC
>site_71
CAGGCTAAACC
>site_72
GGGGATAGAAA
>site_73
AAGGATAAGCA
>site_74
CTGTATAAATA
>site_75
CCGGTTAAATT
>site_76
GCGGATCAACA
>site_77
GAAGATAAAGC
>site_78
CAGGCTAAATC
>site_79
CGAGATAAATA
>site_80
TAGGATAAAAT
>site_81
TATGATAAACA
>site_82
TCGTATAAACA
>site_83
AAGGATAGACC
>site_84
CAGGATAAGAC
>site_85
GAGGATAAGTG
>site_86
TTGTATAAATA
>site_87
GTGAATAAAAG
>site_88
CCGGCTAAATG
>site_89
CCGGCTAAATT
>site_90
TTGGATAAGTT
>site_91
GAGGCTAAATG
>site_92
ATGGATTAAGT
>site_93
CTGGCTAAAAG
>site_94
GAGGATAATAT
>site_95
GGGGATGAAGC
>site_96
GCGGATCAAGA
>site_97
GGGGATAACCA
>site_98
TCGGATAAAAG
>site_99
TTGGATAAATC
>site_100
GCGGATAAAGT
>site_101
CTCGATAAACA
>site_102
TCGGATAAATA
>site_103
AGGGATGAACG
>site_104
CAGTATAAATC
>site_105
AAGTATAAAGG
>site_106
ATGGAGAAAGT
>site_107
AGGGAAAAATT
>site_108
CGGGCTAAATT
>site_109
ATGGAAAAATT
>site_110
GGGAATAAAAA
>site_111
AAGGATGAACA
>site_112
CAGGATTAACA
>site_113
TCGGCTAAATC
>site_114
AATGATAAAAA
>site_115
TGGGATATATG
>site_116
AAGGAAAAAAG
>site_117
ACGGATAAATT
>site_118
CTGAATAAATG
>site_119
ACGGATGAAAA
>site_120
CCGGCTAAACA
>site_121
ATGGATAAACG
>site_122
CCGGATAAATT
>site_123
TGGGTTAAAAG
>site_124
GAGGATACAGA
>site_125
CCGGATAATTG
>site_126
TCGGATAGATT
>site_127
GTGTATAAAAC
>site_128
TTGGATAATTT
>site_129
CAGGCTAAACT
>site_130
GTGGATGAAGG
>site_131
GGGGATTAACA
>site_132
CTGGATAATAG
>site_133
GCGGTTAAATC
>site_134
TAAGATAAAGA
>site_135
GCGGATTAAGA
>site_136
ACGGTTAAAGT
>site_137
AGGGATAAACT
>site_138
TTGGATATATT
>site_139
GCGGATAAAGT
>site_140
TAGGCTAAAAC
>site_141
AAGGCTAAATA
>site_142
CTGGAGAAAAG
>site_143
AAGGCTAAATT
>site_144
GGGGATAAATG
>site_145
TCGGATAGATG
>site_146
GGGGAAAAAGG
>site_147
GGGGAAAAAAG
>site_148
GAGGAAAAAGA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m3_rc.png
;
a	27	20	7	34	0	1	5	1	69	66	62	7	14	15
c	12	13	33	18	1	5	61	1	0	2	0	11	20	17
g	7	15	7	8	70	65	4	0	3	1	4	5	12	20
t	27	25	26	13	2	2	3	71	1	4	7	50	27	21
//
; Sites	73
>site_0
GACTGGCTAATTCG
>site_1
CCCCGGCTTAATCG
>site_2
AGAAGGCTAATTAA
>site_3
TTTAGCCTAAATAG
>site_4
TTTAGGCTAAATAT
>site_5
TCTGGGCTAAATGC
>site_6
TTTAGGCTAAACCA
>site_7
TTTAGCCTAAACCC
>site_8
AGCATGCTAAACTT
>site_9
TCCGGGCTAAATGG
>site_10
AACAGGCTAAATCG
>site_11
TTGAGGGTAAAGTA
>site_12
CTGCGGCTAAAGTG
>site_13
AACCGGGTAAATTC
>site_14
GATAGTCTAAAACA
>site_15
ACAGGGCTAAGTAT
>site_16
AGTAGGCTATATTC
>site_17
TTCAGGCTAATCAG
>site_18
TTTTGGCTAAATCG
>site_19
TTCTGGCTGAATAC
>site_20
GAGCGGATAAATTG
>site_21
TCCCGGCTAAAGTT
>site_22
TTCAGGCTAGATCA
>site_23
CCGAGGCTAAACTA
>site_24
CTCGGGGTAAATTG
>site_25
TTCATGCTAAACTT
>site_26
GTTTGGCTGAATCG
>site_27
ATTAGGCTAAACCG
>site_28
AGTCGGTTAAATTT
>site_29
ACTCGGCCAAATGC
>site_30
CATAGGCTAAATTG
>site_31
AACAGGATAAAATT
>site_32
GTCTGGCTAAATCG
>site_33
AATAGCCTAAACAA
>site_34
CACCGGGTAAATGT
>site_35
TGCCGGCTAAATCA
>site_36
TTCAGGCTAAACCC
>site_37
TATGGGCTATATAG
>site_38
AACCGGTTAAATTG
>site_39
AACAGGCTAAATCT
>site_40
TGTTGTCTAAATCA
>site_41
GTCTGGCTAATTGT
>site_42
TGCCGGCTAAATGC
>site_43
GCCCGGCTAAATTA
>site_44
TGGAGGCTAAATGA
>site_45
TTTAGGCAAAATGC
>site_46
CGCTGGCTAAAAGA
>site_47
CGTTGGCTGAATTT
>site_48
AGTAGGCTATATTC
>site_49
ACAGGGCTAAGTAT
>site_50
TAATGACTAAATAT
>site_51
TGTCGGATAAATAT
>site_52
ACCGGGCTAAATTT
>site_53
ATTAGGCTAATTGC
>site_54
AATCGGCTAAATCT
>site_55
CTACGGATAAATTG
>site_56
ATCCGGCTAAACAT
>site_57
AGCCGGATAAATTT
>site_58
AACTGGCTACATCG
>site_59
ATCAGGCTAAACTC
>site_60
AATAGGCTATAGTT
>site_61
TCGCGGTTAAATCA
>site_62
ACCTGGCTAATTTC
>site_63
TTTAGGCTACAATT
>site_64
TGTAGCCTAAAGGG
>site_65
TTCTGGCTAAGTTA
>site_66
AACAGGCTAAGAAA
>site_67
CACAGGCTAATATC
>site_68
ATCAGCCTAAATCG
>site_69
ACTAGGCTAAAACC
>site_70
CAGGCGCTAAATGT
>site_71
TAAAGGCTAAATAC
>site_72
CGAAGGCTAAATTC
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.161110_2026-03-30.161110_KXazJq/results/oligos_7nt_mkv2//peak-motifs_oligos-2str-noov_7nt_mkv2_pssm_count_matrices_logo_m4_rc.png
;
; Host name	rsat
; Job started	2026-03-30.161123
; Job done	2026-03-30.161124
; Seconds	0.13
;	user	0.13
;	system	0.04
;	cuser	0.94
;	csystem	0.17
