position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.163837_2026-03-30.163837_8afeND/data/sequences/peak-motifs_test_maxlen10_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title aniger -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.163837_2026-03-30.163837_8afeND/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.163837_2026-03-30.163837_8afeND/data/sequences/peak-motifs_test_maxlen10_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2026/03/30/peak-motifs.2026-03-30.163837_2026-03-30.163837_8afeND/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 37 Sum of sequence lengths 370 Min sequence length 0 Max sequence length 10 Average sequence length 10 Possible positions 370 Sequences: # length ID 1 10 pid_1787_+ 2 10 pid_4473_- 3 10 pid_10881_+ 4 10 pid_9810_+ 5 10 pid_11670_- 6 10 pid_10052_- 7 10 pid_4471_+ 8 10 pid_8708_+ 9 10 pid_9019_- 10 10 pid_8994_+ 11 10 pid_3339_- 12 10 pid_8911_- 13 10 pid_1069_+ 14 10 pid_9001_- 15 10 pid_9251_- 16 10 pid_1918_- 17 10 pid_11715_- 18 10 pid_2451_+ 19 10 pid_1071_+ 20 10 pid_7_- 21 10 pid_819_- 22 10 pid_9556_+ 23 10 pid_1952_- 24 10 pid_10868_+ 25 10 pid_8707_- 26 10 pid_11685_+ 27 10 pid_2929_+ 28 10 pid_9002_+ 29 10 pid_268_+ 30 10 pid_10870_+ 31 10 pid_7382_+ 32 10 pid_8993_- 33 10 pid_3928_- 34 10 pid_4917_+ 35 10 pid_1648_- 36 10 pid_4328_- 37 10 pid_4034_+ Oligonucleotide statistics: Total occurrences 370 Position interval parameters: Position interval 20 Number of windows 2 Total positions 370 Degrees of freedom 1 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -1 [-19,0] -9.5 37 222 2 0 [1,20] 10.5 37 148 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -9.5 occurrences in window 1 [-19,0] 11 10.5 occurrences in window 2 [1,20]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -9.5 | 10.5 |
|---|---|---|---|---|---|---|---|---|---|---|
| t | t | 97 | 1.7 | 1 | 2.0e-01 | 0.8 | 0.10 | 1 | 52 | 45 |
| c | c | 102 | 1.4 | 1 | 2.4e-01 | 0.96 | 0.02 | 2 | 67 | 35 |
| a | a | 96 | 0.1 | 1 | 7.7e-01 | 3.1 | -0.49 | 3 | 59 | 37 |
| g | g | 75 | 0.1 | 1 | 8.1e-01 | 3.3 | -0.51 | 4 | 44 | 31 |
Host name rsat Job started 2026-03-30.163840 Job done 2026-03-30.163840 Seconds 0.12 user 0.12 system 0.01 cuser 0 ; csystem 0